Wall clock time and date at job start Sat Apr 11 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.58582 * 2 1 4 4 C 1.53183 * 109.59125 * 120.43017 * 2 1 3 5 5 H 1.08999 * 109.50010 * 294.37096 * 4 2 1 6 6 N 1.46494 * 109.49927 * 54.43836 * 4 2 1 7 7 C 1.34777 * 120.00467 * 205.00262 * 6 4 2 8 8 O 1.21481 * 119.99511 * 359.97438 * 7 6 4 9 9 C 1.48456 * 120.00509 * 179.97438 * 7 6 4 10 10 C 1.39534 * 120.55162 * 179.97438 * 9 7 6 11 11 C 1.38759 * 118.26386 * 180.02562 * 10 9 7 12 12 C 1.50698 * 120.42777 * 180.02562 * 11 10 9 13 13 F 1.39899 * 109.47241 * 210.00080 * 12 11 10 14 14 F 1.39910 * 109.46780 * 330.00121 * 12 11 10 15 15 N 1.32200 * 119.14460 * 359.97438 * 11 10 9 16 16 C 1.31875 * 121.04187 * 0.02562 * 15 11 10 17 17 N 1.31589 * 121.91475 * 359.70967 * 16 15 11 18 18 C 1.53046 * 109.31471 * 174.42483 * 4 2 1 19 19 C 1.53045 * 109.53278 * 298.63241 * 18 4 2 20 20 C 1.52760 * 109.38321 * 61.24099 * 19 18 4 21 21 N 1.46923 * 109.00972 * 305.58613 * 20 19 18 22 22 C 1.36935 * 120.63227 * 233.58663 * 21 20 19 23 23 H 1.08000 * 120.00383 * 150.46079 * 22 21 20 24 24 C 1.38817 * 119.99983 * 330.45954 * 22 21 20 25 25 N 1.31626 * 119.99872 * 336.14227 * 24 22 21 26 26 Si 1.86797 * 120.00360 * 156.13765 * 24 22 21 27 27 H 1.48506 * 109.46511 * 60.00416 * 26 24 22 28 28 H 1.48490 * 109.47151 * 300.00571 * 26 24 22 29 29 H 1.48500 * 109.47239 * 179.97438 * 26 24 22 30 30 H 1.08998 * 109.46567 * 180.28251 * 1 2 3 31 31 H 1.09003 * 109.46571 * 300.27705 * 1 2 3 32 32 H 1.08994 * 109.47319 * 60.28150 * 1 2 3 33 33 H 0.97002 * 120.00052 * 25.00209 * 6 4 2 34 34 H 1.08008 * 120.86698 * 0.02562 * 10 9 7 35 35 H 1.08996 * 109.47507 * 89.99573 * 12 11 10 36 36 H 1.08008 * 119.04785 * 179.97438 * 16 15 11 37 37 H 1.08998 * 109.46262 * 58.65156 * 18 4 2 38 38 H 1.08999 * 109.45834 * 178.61846 * 18 4 2 39 39 H 1.08997 * 109.49712 * 181.31719 * 19 18 4 40 40 H 1.08999 * 109.50021 * 301.41080 * 19 18 4 41 41 H 1.09002 * 109.50885 * 185.70100 * 20 19 18 42 42 H 1.09001 * 109.43410 * 65.42323 * 20 19 18 43 43 H 0.97004 * 119.99704 * 354.25846 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 1.2444 5 1 1.7662 -0.1696 2.1365 6 7 1.4510 -2.0693 1.3048 7 6 1.3280 -2.6990 2.4900 8 8 1.7092 -2.1570 3.5082 9 6 0.7269 -4.0551 2.5514 10 6 0.5946 -4.7177 3.7722 11 6 0.0266 -5.9837 3.7745 12 6 -0.1403 -6.7430 5.0654 13 9 -0.0628 -8.1166 4.8119 14 9 0.8733 -6.3754 5.9570 15 7 -0.3673 -6.5147 2.6297 16 6 -0.2275 -5.8609 1.4930 17 7 0.3007 -4.6567 1.4436 18 6 3.5677 -0.8493 1.1689 19 6 3.9570 -1.6655 -0.0658 20 6 3.4644 -0.9501 -1.3225 21 7 2.0225 -0.6979 -1.1955 22 6 1.1536 -1.1107 -2.1700 23 1 0.1371 -1.3696 -1.9128 24 6 1.5791 -1.1963 -3.4885 25 7 2.6003 -0.4742 -3.8987 26 14 0.7028 -2.3365 -4.6807 27 1 -0.7235 -1.9374 -4.7893 28 1 0.7895 -3.7332 -4.1843 29 1 1.3451 -2.2444 -6.0165 30 1 -0.3632 -1.0277 0.0051 31 1 -0.3632 0.5182 0.8875 32 1 -0.3633 0.5094 -0.8924 33 1 1.1470 -2.5023 0.4918 34 1 0.9257 -4.2572 4.6914 35 1 -1.1110 -6.5083 5.5022 36 1 -0.5601 -6.3254 0.5764 37 1 4.0063 0.1461 1.0993 38 1 3.9380 -1.3474 2.0649 39 1 5.0412 -1.7693 -0.1063 40 1 3.4985 -2.6527 -0.0088 41 1 3.6503 -1.5768 -2.1947 42 1 3.9928 -0.0030 -1.4313 43 1 3.0026 0.1785 -3.3044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993491963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:10 Heat of formation + Delta-G solvation = -80.188437 kcal Electronic energy + Delta-G solvation = -30348.549333 eV Core-core repulsion = 25871.648889 eV Total energy + Delta-G solvation = -4476.900444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.13702 -48.15297 -42.53898 -41.09988 -39.33537 -35.99646 -35.54844 -34.12967 -33.73911 -33.40038 -31.03733 -28.88969 -28.05815 -26.85024 -26.22769 -24.89743 -23.64843 -22.64173 -22.13992 -20.44258 -19.83280 -19.33460 -18.86503 -18.65724 -18.08655 -17.18583 -17.03065 -16.77191 -16.73183 -16.36363 -16.06821 -15.98162 -15.65807 -15.40625 -15.25727 -14.94264 -14.84838 -14.66504 -14.47010 -14.28847 -14.04955 -13.50512 -13.24418 -12.82287 -12.76288 -12.75196 -12.52173 -12.30441 -12.29278 -12.06964 -11.91883 -11.86355 -11.76323 -11.59983 -11.53622 -11.07816 -10.97280 -10.64831 -10.40679 -10.10430 -8.85175 -8.11969 -5.31537 -0.86968 -0.53931 1.48246 1.63305 1.69696 1.76912 1.87015 2.05409 2.47902 2.69584 2.70976 2.87439 3.02751 3.29951 3.37745 3.46810 3.61261 3.76019 3.83734 3.88823 3.93676 4.05672 4.11320 4.24408 4.32449 4.44509 4.55020 4.58478 4.83239 4.84566 4.86553 4.89557 4.99917 5.06541 5.21833 5.28521 5.33225 5.37944 5.42982 5.53942 5.99397 6.36222 6.49697 6.63462 6.94889 7.12299 7.85828 8.30232 9.12537 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.003360 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.252619 B = 8331.462167 C = 9510.442764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.038 0.962 4 C 0.138 3.862 5 H 0.092 0.908 6 N -0.673 5.673 7 C 0.563 3.437 8 O -0.554 6.554 9 C 0.129 3.871 10 C -0.140 4.140 11 C 0.099 3.901 12 C 0.332 3.668 13 F -0.193 7.193 14 F -0.194 7.194 15 N -0.485 5.485 16 C 0.303 3.697 17 N -0.495 5.495 18 C -0.115 4.115 19 C -0.123 4.123 20 C 0.159 3.841 21 N -0.604 5.604 22 C -0.336 4.336 23 H 0.064 0.936 24 C -0.074 4.074 25 N -0.950 5.950 26 Si 1.106 2.894 27 H -0.278 1.278 28 H -0.279 1.279 29 H -0.301 1.301 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.416 0.584 34 H 0.178 0.822 35 H 0.187 0.813 36 H 0.240 0.760 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.005 0.995 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.609 -10.090 17.486 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.052 3.948 3 H 0.056 0.944 4 C 0.032 3.968 5 H 0.110 0.890 6 N -0.322 5.322 7 C 0.347 3.653 8 O -0.432 6.432 9 C -0.019 4.019 10 C -0.163 4.163 11 C -0.051 4.051 12 C 0.278 3.722 13 F -0.174 7.174 14 F -0.175 7.175 15 N -0.199 5.199 16 C 0.016 3.984 17 N -0.212 5.212 18 C -0.154 4.154 19 C -0.162 4.162 20 C 0.033 3.967 21 N -0.329 5.329 22 C -0.466 4.466 23 H 0.082 0.918 24 C -0.271 4.271 25 N -0.592 5.592 26 Si 0.932 3.068 27 H -0.204 1.204 28 H -0.205 1.205 29 H -0.228 1.228 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.254 0.746 34 H 0.195 0.805 35 H 0.203 0.797 36 H 0.256 0.744 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.023 0.977 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.613 -10.680 15.783 20.171 hybrid contribution 0.591 1.038 1.354 1.806 sum -6.022 -9.642 17.137 20.565 Atomic orbital electron populations 1.21679 0.94324 1.01480 1.00836 1.20854 0.94551 0.93493 0.85937 0.94426 1.21530 0.93184 0.82782 0.99321 0.88992 1.45897 1.59091 1.18031 1.09223 1.17943 0.79114 0.84183 0.84064 1.90756 1.51168 1.66508 1.34750 1.21639 0.95086 0.95025 0.90177 1.22725 0.97488 0.95250 1.00820 1.22617 0.94081 0.92511 0.95877 1.20502 0.93292 0.75209 0.83197 1.93040 1.97247 1.32460 1.94674 1.93054 1.64430 1.91253 1.68764 1.68132 1.16322 1.36656 0.98830 1.25738 0.89979 0.85956 0.96766 1.68471 1.09461 1.12214 1.31014 1.21743 0.95053 1.01012 0.97586 1.21797 1.00029 0.98862 0.95540 1.20696 0.84165 0.95892 0.95935 1.44385 1.02633 1.65924 1.19995 1.20136 0.96317 1.41632 0.88477 0.91804 1.26942 1.00478 1.01845 0.97814 1.70894 1.27716 1.22571 1.38050 0.82958 0.74753 0.75186 0.73887 1.20379 1.20479 1.22821 0.93009 0.91455 0.93621 0.74575 0.80503 0.79686 0.74409 0.90549 0.91927 0.91418 0.93346 0.93776 0.97704 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 7.73 71.98 0.56 -3.80 16 2 C 0.16 5.90 3.20 44.97 0.14 6.04 16 3 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 4 C 0.14 4.49 2.32 45.07 0.10 4.60 16 5 H 0.09 2.86 7.58 -2.39 -0.02 2.84 16 6 N -0.67 -21.65 3.45 -444.47 -1.53 -23.19 16 7 C 0.56 17.25 7.80 86.97 0.68 17.93 16 8 O -0.55 -18.55 16.09 -3.66 -0.06 -18.61 16 9 C 0.13 3.40 6.79 42.00 0.29 3.69 16 10 C -0.14 -2.98 9.07 22.71 0.21 -2.77 16 11 C 0.10 1.85 6.61 42.63 0.28 2.13 16 12 C 0.33 4.34 5.74 71.24 0.41 4.75 16 13 F -0.19 -3.41 17.09 44.97 0.77 -2.64 16 14 F -0.19 -3.06 16.56 44.97 0.74 -2.32 16 15 N -0.49 -9.85 10.08 -188.12 -1.90 -11.75 16 16 C 0.30 6.22 12.27 180.92 2.22 8.44 16 17 N -0.50 -12.77 9.70 -189.15 -1.84 -14.60 16 18 C -0.12 -3.69 5.58 30.62 0.17 -3.52 16 19 C -0.12 -4.43 5.91 30.53 0.18 -4.25 16 20 C 0.16 7.06 4.66 86.22 0.40 7.46 16 21 N -0.60 -27.19 2.49 -676.05 -1.69 -28.88 16 22 C -0.34 -16.88 8.49 84.03 0.71 -16.17 16 23 H 0.06 3.15 6.28 -2.91 -0.02 3.13 16 24 C -0.07 -3.99 4.70 84.86 0.40 -3.59 16 25 N -0.95 -55.73 12.46 21.65 0.27 -55.46 16 26 Si 1.11 48.78 29.98 68.60 2.06 50.84 16 27 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 28 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 29 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 30 H 0.05 1.82 6.39 -2.39 -0.02 1.80 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.75 7.62 -2.39 -0.02 1.73 16 33 H 0.42 14.63 7.16 -92.71 -0.66 13.97 16 34 H 0.18 3.39 7.37 -2.91 -0.02 3.37 16 35 H 0.19 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.24 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.05 1.82 7.53 -2.39 -0.02 1.80 16 41 H 0.04 2.26 6.40 -2.39 -0.02 2.25 16 42 H 0.00 0.23 7.85 -2.39 -0.02 0.21 16 43 H 0.25 15.20 6.69 -92.71 -0.62 14.58 16 Total: -1.00 -65.24 357.90 4.13 -61.11 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.55 Total: 24.57 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 6.75 Total: 20.94 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -6.68 Total: -133.88 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.06 Total: -18.61 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 1.51 Total: -4.96 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.06 Total: 50.84 kcal Total: -65.24 4.13 -61.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993491963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.083 kcal (2) G-P(sol) polarization free energy of solvation -65.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds