Wall clock time and date at job start Sat Apr 11 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.57865 * 2 1 4 4 C 1.53191 * 109.58584 * 239.72177 * 2 1 3 5 5 H 1.08998 * 109.49522 * 305.52612 * 4 2 1 6 6 N 1.46505 * 109.49626 * 65.61970 * 4 2 1 7 7 C 1.34777 * 119.99749 * 205.00020 * 6 4 2 8 8 O 1.21280 * 120.00074 * 359.97438 * 7 6 4 9 9 C 1.50704 * 119.99794 * 180.02562 * 7 6 4 10 10 C 1.50706 * 109.46892 * 179.97438 * 9 7 6 11 11 C 1.35304 * 126.04089 * 99.71523 * 10 9 7 12 12 N 1.34952 * 107.76186 * 179.89476 * 11 10 9 13 13 C 1.46498 * 126.02383 * 180.17064 * 12 11 10 14 14 N 1.40083 * 107.94797 * 0.36688 * 12 11 10 15 15 C 1.30895 * 108.20159 * 359.76866 * 14 12 11 16 16 Cl 1.73595 * 125.91172 * 180.02562 * 15 14 12 17 17 C 1.53033 * 109.31232 * 185.57319 * 4 2 1 18 18 C 1.53039 * 109.53743 * 61.36443 * 17 4 2 19 19 C 1.53188 * 109.31505 * 298.63174 * 18 17 4 20 20 N 1.46915 * 109.58832 * 120.28320 * 2 1 3 21 21 C 1.36940 * 120.63560 * 353.40144 * 20 2 1 22 22 H 1.08003 * 119.99734 * 29.68922 * 21 20 2 23 23 C 1.38811 * 119.99969 * 209.69039 * 21 20 2 24 24 N 1.31611 * 120.00234 * 12.18009 * 23 21 20 25 25 Si 1.86803 * 119.99684 * 192.17843 * 23 21 20 26 26 H 1.48496 * 109.46898 * 90.00054 * 25 23 21 27 27 H 1.48504 * 109.47235 * 210.00108 * 25 23 21 28 28 H 1.48506 * 109.47126 * 330.00037 * 25 23 21 29 29 H 1.08996 * 109.46944 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47599 * 59.99774 * 1 2 3 31 31 H 1.09004 * 109.47164 * 299.99609 * 1 2 3 32 32 H 0.96998 * 120.00191 * 25.00604 * 6 4 2 33 33 H 1.08992 * 109.46951 * 299.99973 * 9 7 6 34 34 H 1.08999 * 109.47178 * 59.99848 * 9 7 6 35 35 H 1.07999 * 126.12284 * 0.03313 * 11 10 9 36 36 H 1.08996 * 109.47292 * 270.25651 * 13 12 11 37 37 H 1.09000 * 109.47106 * 30.25550 * 13 12 11 38 38 H 1.09007 * 109.47059 * 150.25090 * 13 12 11 39 39 H 1.08996 * 109.46100 * 181.38500 * 17 4 2 40 40 H 1.09003 * 109.46081 * 301.35755 * 17 4 2 41 41 H 1.09001 * 109.50081 * 58.58987 * 18 17 4 42 42 H 1.09004 * 109.49985 * 178.68085 * 18 17 4 43 43 H 1.08995 * 109.58816 * 174.41957 * 19 18 17 44 44 H 1.08999 * 109.58997 * 294.71219 * 19 18 17 45 45 H 0.97000 * 120.00259 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7277 -1.2464 5 1 1.6030 -1.7236 -1.2936 6 7 1.6704 0.0300 -2.4435 7 6 1.5470 -0.6001 -3.6285 8 8 1.7454 -1.7942 -3.7039 9 6 1.1637 0.1794 -4.8600 10 6 1.0950 -0.7520 -6.0428 11 6 -0.0300 -1.2881 -6.5697 12 7 0.3326 -2.0611 -7.6147 13 6 -0.5727 -2.8274 -8.4746 14 7 1.7276 -2.0051 -7.7295 15 6 2.1842 -1.2201 -6.7869 16 17 3.8520 -0.8271 -6.5082 17 6 3.5675 -0.8463 -1.1713 18 6 3.9570 -1.6656 0.0612 19 6 3.4652 -0.9485 1.3224 20 7 2.0226 -0.6980 1.1952 21 6 1.1538 -1.1105 2.1701 22 1 0.1392 -1.3758 1.9121 23 6 1.5773 -1.1875 3.4898 24 7 2.7218 -0.6445 3.8465 25 14 0.5224 -2.0620 4.7595 26 1 0.9015 -3.4967 4.8145 27 1 0.7360 -1.4422 6.0921 28 1 -0.9087 -1.9421 4.3815 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 1.5122 0.9851 -2.3832 33 1 0.1903 0.6451 -4.7068 34 1 1.9100 0.9511 -5.0485 35 1 -1.0381 -1.1247 -6.2183 36 1 -0.7133 -3.8244 -8.0571 37 1 -1.5351 -2.3191 -8.5334 38 1 -0.1432 -2.9088 -9.4732 39 1 3.9378 -1.3419 -2.0687 40 1 4.0060 0.1490 -1.0990 41 1 3.4985 -2.6527 0.0017 42 1 5.0413 -1.7695 0.1012 43 1 3.6520 -1.5745 2.1949 44 1 3.9922 -0.0008 1.4329 45 1 3.0175 -0.6980 4.7688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993836391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:24 Heat of formation + Delta-G solvation = 56.262967 kcal Electronic energy + Delta-G solvation = -27707.156609 eV Core-core repulsion = 23787.969822 eV Total energy + Delta-G solvation = -3919.186787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56038 -39.52639 -37.55544 -36.82905 -34.22222 -33.73151 -32.57102 -32.05463 -31.54812 -29.41725 -28.33524 -26.40661 -25.65876 -24.92018 -22.27030 -21.51026 -20.90193 -20.62983 -19.96170 -19.24836 -17.26110 -16.86597 -16.31563 -15.73628 -15.63855 -15.26800 -15.09008 -14.78470 -13.92855 -13.88087 -13.74386 -13.63468 -13.54475 -13.30961 -13.10596 -12.87257 -12.63588 -12.50906 -11.97772 -11.79038 -11.67978 -11.59323 -11.50676 -11.07433 -10.87601 -10.76260 -10.67219 -10.52667 -10.24144 -10.07770 -9.99337 -9.81720 -9.55757 -9.45029 -9.31563 -8.63729 -8.56579 -8.42478 -6.63767 -5.76918 -3.23258 1.34565 1.52151 2.29259 2.65967 2.96685 3.38360 3.44736 3.45656 3.61112 4.21173 4.49374 4.50248 4.78029 4.79633 4.97385 5.03844 5.15267 5.32148 5.34249 5.40797 5.44565 5.57835 5.65658 5.74090 5.86256 5.98626 6.02739 6.14913 6.26285 6.38024 6.44242 6.59551 6.62125 6.70679 6.79865 6.81020 6.92699 7.01913 7.12917 7.22258 7.45848 7.73576 7.82424 7.88543 8.46908 8.59930 9.22704 9.84954 10.41421 11.31277 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019975 B = 0.002625 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.393461 B =10662.159416 C =11390.952903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.133 3.867 5 H 0.084 0.916 6 N -0.722 5.722 7 C 0.510 3.490 8 O -0.532 6.532 9 C -0.065 4.065 10 C -0.200 4.200 11 C 0.077 3.923 12 N -0.365 5.365 13 C 0.103 3.897 14 N -0.285 5.285 15 C 0.143 3.857 16 Cl 0.007 6.993 17 C -0.116 4.116 18 C -0.141 4.141 19 C 0.169 3.831 20 N -0.583 5.583 21 C -0.250 4.250 22 H 0.070 0.930 23 C 0.003 3.997 24 N -0.904 5.904 25 Si 0.903 3.097 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.279 1.279 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.395 0.605 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.182 0.818 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.018 0.982 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 2.961 -22.904 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.027 3.973 5 H 0.102 0.898 6 N -0.372 5.372 7 C 0.295 3.705 8 O -0.408 6.408 9 C -0.107 4.107 10 C -0.213 4.213 11 C -0.069 4.069 12 N -0.148 5.148 13 C -0.038 4.038 14 N -0.110 5.110 15 C -0.049 4.049 16 Cl 0.035 6.965 17 C -0.155 4.155 18 C -0.180 4.180 19 C 0.043 3.957 20 N -0.306 5.306 21 C -0.379 4.379 22 H 0.088 0.912 23 C -0.195 4.195 24 N -0.549 5.549 25 Si 0.733 3.267 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.228 0.772 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.199 0.801 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.109 0.891 44 H 0.036 0.964 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.131 1.301 -23.819 24.400 hybrid contribution -0.544 0.478 1.434 1.607 sum -5.674 1.779 -22.385 23.161 Atomic orbital electron populations 1.21814 0.95785 1.01570 1.00163 1.20559 0.93136 0.93595 0.86701 0.95545 1.21720 0.94968 0.96736 0.83873 0.89830 1.46134 1.70608 1.12047 1.08443 1.20481 0.77413 0.88287 0.84305 1.90708 1.49544 1.15104 1.85487 1.19961 1.04208 0.96806 0.89693 1.19214 0.90576 1.08965 1.02501 1.22290 1.00127 0.94257 0.90248 1.48158 1.04159 1.37511 1.24986 1.21935 0.91343 0.95864 0.94617 1.77335 0.88904 1.21786 1.22981 1.22457 0.88066 0.98277 0.96093 1.98395 1.11308 1.91852 1.94973 1.21752 0.95554 0.99937 0.98269 1.22187 0.99156 0.99682 0.97009 1.20871 0.83022 0.97243 0.94526 1.44030 1.03207 1.65161 1.18225 1.19181 0.94988 1.37722 0.86023 0.91247 1.25103 0.97624 0.99742 0.97055 1.69989 1.21913 1.46015 1.16965 0.86279 0.79966 0.79413 0.81014 1.21457 1.21769 1.20447 0.92805 0.94276 0.91863 0.77177 0.88056 0.88136 0.80077 0.90347 0.89027 0.89071 0.93197 0.92861 0.92662 0.93124 0.89129 0.96386 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.84 37.16 0.29 -2.16 16 2 C 0.17 3.33 3.03 -67.60 -0.20 3.12 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.13 2.39 2.00 -67.81 -0.14 2.25 16 5 H 0.08 1.76 7.58 -51.93 -0.39 1.37 16 6 N -0.72 -10.07 4.58 -53.69 -0.25 -10.31 16 7 C 0.51 7.30 7.79 -10.98 -0.09 7.22 16 8 O -0.53 -10.03 15.70 5.56 0.09 -9.94 16 9 C -0.07 -0.66 6.04 -29.03 -0.18 -0.84 16 10 C -0.20 -2.36 4.60 -105.02 -0.48 -2.84 16 11 C 0.08 0.74 11.40 -17.23 -0.20 0.54 16 12 N -0.36 -3.73 4.01 -68.17 -0.27 -4.01 16 13 C 0.10 0.54 11.47 59.85 0.69 1.23 16 14 N -0.28 -3.87 12.58 32.94 0.41 -3.46 16 15 C 0.14 1.94 7.84 -17.30 -0.14 1.81 16 16 Cl 0.01 0.09 29.16 -51.86 -1.51 -1.42 16 17 C -0.12 -2.14 5.46 -26.69 -0.15 -2.28 16 18 C -0.14 -2.84 6.08 -26.61 -0.16 -3.00 16 19 C 0.17 4.03 5.27 -3.69 -0.02 4.01 16 20 N -0.58 -14.18 3.00 -164.75 -0.49 -14.67 16 21 C -0.25 -6.62 8.59 -15.06 -0.13 -6.75 16 22 H 0.07 1.80 6.21 -52.48 -0.33 1.48 16 23 C 0.00 0.09 5.03 -17.43 -0.09 0.00 16 24 N -0.90 -25.83 11.03 55.49 0.61 -25.22 16 25 Si 0.90 21.52 29.57 -169.99 -5.03 16.49 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 29 H 0.05 1.03 7.42 -51.93 -0.39 0.65 16 30 H 0.04 0.56 7.79 -51.93 -0.40 0.16 16 31 H 0.06 1.23 7.64 -51.93 -0.40 0.83 16 32 H 0.39 4.34 8.60 -40.82 -0.35 3.99 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 2.43 6.04 -51.93 -0.31 2.11 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -34.47 380.58 -8.46 -42.94 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.78 Total: 1.56 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -0.98 Total: 2.31 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.01 Total: -57.67 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -1.51 Total: -1.42 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.47 -8.46 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993836391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.199 kcal (2) G-P(sol) polarization free energy of solvation -34.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds