Wall clock time and date at job start Sat Apr 11 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.57865 * 2 1 4 4 C 1.53191 * 109.58584 * 239.72177 * 2 1 3 5 5 H 1.08998 * 109.49522 * 305.52612 * 4 2 1 6 6 N 1.46505 * 109.49626 * 65.61970 * 4 2 1 7 7 C 1.34777 * 119.99749 * 205.00020 * 6 4 2 8 8 O 1.21280 * 120.00074 * 359.97438 * 7 6 4 9 9 C 1.50704 * 119.99794 * 180.02562 * 7 6 4 10 10 C 1.50706 * 109.46892 * 179.97438 * 9 7 6 11 11 C 1.35304 * 126.04089 * 99.71523 * 10 9 7 12 12 N 1.34952 * 107.76186 * 179.89476 * 11 10 9 13 13 C 1.46498 * 126.02383 * 180.17064 * 12 11 10 14 14 N 1.40083 * 107.94797 * 0.36688 * 12 11 10 15 15 C 1.30895 * 108.20159 * 359.76866 * 14 12 11 16 16 Cl 1.73595 * 125.91172 * 180.02562 * 15 14 12 17 17 C 1.53033 * 109.31232 * 185.57319 * 4 2 1 18 18 C 1.53039 * 109.53743 * 61.36443 * 17 4 2 19 19 C 1.53188 * 109.31505 * 298.63174 * 18 17 4 20 20 N 1.46915 * 109.58832 * 120.28320 * 2 1 3 21 21 C 1.36940 * 120.63560 * 353.40144 * 20 2 1 22 22 H 1.08003 * 119.99734 * 29.68922 * 21 20 2 23 23 C 1.38811 * 119.99969 * 209.69039 * 21 20 2 24 24 N 1.31611 * 120.00234 * 12.18009 * 23 21 20 25 25 Si 1.86803 * 119.99684 * 192.17843 * 23 21 20 26 26 H 1.48496 * 109.46898 * 90.00054 * 25 23 21 27 27 H 1.48504 * 109.47235 * 210.00108 * 25 23 21 28 28 H 1.48506 * 109.47126 * 330.00037 * 25 23 21 29 29 H 1.08996 * 109.46944 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47599 * 59.99774 * 1 2 3 31 31 H 1.09004 * 109.47164 * 299.99609 * 1 2 3 32 32 H 0.96998 * 120.00191 * 25.00604 * 6 4 2 33 33 H 1.08992 * 109.46951 * 299.99973 * 9 7 6 34 34 H 1.08999 * 109.47178 * 59.99848 * 9 7 6 35 35 H 1.07999 * 126.12284 * 0.03313 * 11 10 9 36 36 H 1.08996 * 109.47292 * 270.25651 * 13 12 11 37 37 H 1.09000 * 109.47106 * 30.25550 * 13 12 11 38 38 H 1.09007 * 109.47059 * 150.25090 * 13 12 11 39 39 H 1.08996 * 109.46100 * 181.38500 * 17 4 2 40 40 H 1.09003 * 109.46081 * 301.35755 * 17 4 2 41 41 H 1.09001 * 109.50081 * 58.58987 * 18 17 4 42 42 H 1.09004 * 109.49985 * 178.68085 * 18 17 4 43 43 H 1.08995 * 109.58816 * 174.41957 * 19 18 17 44 44 H 1.08999 * 109.58997 * 294.71219 * 19 18 17 45 45 H 0.97000 * 120.00259 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7277 -1.2464 5 1 1.6030 -1.7236 -1.2936 6 7 1.6704 0.0300 -2.4435 7 6 1.5470 -0.6001 -3.6285 8 8 1.7454 -1.7942 -3.7039 9 6 1.1637 0.1794 -4.8600 10 6 1.0950 -0.7520 -6.0428 11 6 -0.0300 -1.2881 -6.5697 12 7 0.3326 -2.0611 -7.6147 13 6 -0.5727 -2.8274 -8.4746 14 7 1.7276 -2.0051 -7.7295 15 6 2.1842 -1.2201 -6.7869 16 17 3.8520 -0.8271 -6.5082 17 6 3.5675 -0.8463 -1.1713 18 6 3.9570 -1.6656 0.0612 19 6 3.4652 -0.9485 1.3224 20 7 2.0226 -0.6980 1.1952 21 6 1.1538 -1.1105 2.1701 22 1 0.1392 -1.3758 1.9121 23 6 1.5773 -1.1875 3.4898 24 7 2.7218 -0.6445 3.8465 25 14 0.5224 -2.0620 4.7595 26 1 0.9015 -3.4967 4.8145 27 1 0.7360 -1.4422 6.0921 28 1 -0.9087 -1.9421 4.3815 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 1.5122 0.9851 -2.3832 33 1 0.1903 0.6451 -4.7068 34 1 1.9100 0.9511 -5.0485 35 1 -1.0381 -1.1247 -6.2183 36 1 -0.7133 -3.8244 -8.0571 37 1 -1.5351 -2.3191 -8.5334 38 1 -0.1432 -2.9088 -9.4732 39 1 3.9378 -1.3419 -2.0687 40 1 4.0060 0.1490 -1.0990 41 1 3.4985 -2.6527 0.0017 42 1 5.0413 -1.7695 0.1012 43 1 3.6520 -1.5745 2.1949 44 1 3.9922 -0.0008 1.4329 45 1 3.0175 -0.6980 4.7688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993836391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:23 Heat of formation + Delta-G solvation = 33.182114 kcal Electronic energy + Delta-G solvation = -27708.157470 eV Core-core repulsion = 23787.969822 eV Total energy + Delta-G solvation = -3920.187648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.34174 -40.81215 -39.09700 -37.74866 -35.78826 -34.48657 -34.18334 -33.38491 -32.82840 -30.95684 -29.21197 -27.81101 -26.92416 -26.46486 -23.84322 -22.31020 -22.26229 -21.90318 -21.19320 -20.75633 -18.33391 -18.08235 -17.74962 -17.18268 -16.61807 -16.48197 -16.16639 -15.91713 -15.56359 -15.47260 -15.04575 -14.71037 -14.69206 -14.35375 -14.25573 -14.22112 -13.94489 -13.36456 -13.27740 -13.11973 -12.83526 -12.79476 -12.63866 -12.57486 -12.49430 -12.46095 -12.32411 -11.96631 -11.77012 -11.73290 -11.57599 -11.51512 -11.14328 -10.74426 -10.50424 -10.27917 -9.85788 -9.43134 -8.60918 -7.82239 -5.30206 0.52669 0.76306 1.42870 1.47830 1.50047 1.57462 1.88438 1.99429 2.40969 2.60374 3.33421 3.57699 3.67996 3.89147 3.95545 4.06592 4.13494 4.25162 4.33393 4.40679 4.41682 4.44560 4.59168 4.62250 4.67910 4.71154 4.74940 4.83774 4.92122 4.99017 5.01592 5.08129 5.16777 5.19855 5.30236 5.36334 5.52048 5.56651 5.70742 5.72605 5.81558 6.01325 6.42198 6.45367 6.80935 7.19327 7.51770 7.90023 8.41440 9.24318 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019975 B = 0.002625 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.393461 B =10662.159416 C =11390.952903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.165 3.835 3 H 0.034 0.966 4 C 0.151 3.849 5 H 0.053 0.947 6 N -0.710 5.710 7 C 0.511 3.489 8 O -0.580 6.580 9 C -0.054 4.054 10 C -0.226 4.226 11 C 0.089 3.911 12 N -0.363 5.363 13 C 0.092 3.908 14 N -0.326 5.326 15 C 0.121 3.879 16 Cl -0.005 7.005 17 C -0.109 4.109 18 C -0.131 4.131 19 C 0.176 3.824 20 N -0.602 5.602 21 C -0.250 4.250 22 H 0.073 0.927 23 C -0.051 4.051 24 N -0.936 5.936 25 Si 0.962 3.038 26 H -0.291 1.291 27 H -0.296 1.296 28 H -0.266 1.266 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.414 0.586 33 H 0.144 0.856 34 H 0.117 0.883 35 H 0.225 0.775 36 H 0.083 0.917 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.040 0.960 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.003 0.997 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.113 4.032 -24.723 26.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.058 3.942 3 H 0.052 0.948 4 C 0.044 3.956 5 H 0.071 0.929 6 N -0.362 5.362 7 C 0.298 3.702 8 O -0.459 6.459 9 C -0.095 4.095 10 C -0.239 4.239 11 C -0.058 4.058 12 N -0.146 5.146 13 C -0.047 4.047 14 N -0.153 5.153 15 C -0.070 4.070 16 Cl 0.023 6.977 17 C -0.147 4.147 18 C -0.170 4.170 19 C 0.051 3.949 20 N -0.326 5.326 21 C -0.380 4.380 22 H 0.091 0.909 23 C -0.246 4.246 24 N -0.582 5.582 25 Si 0.791 3.209 26 H -0.218 1.218 27 H -0.222 1.222 28 H -0.191 1.191 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.250 0.750 33 H 0.161 0.839 34 H 0.135 0.865 35 H 0.241 0.759 36 H 0.101 0.899 37 H 0.147 0.853 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.021 0.979 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.596 2.404 -25.691 26.898 hybrid contribution 0.162 0.104 1.888 1.897 sum -7.434 2.507 -23.803 25.063 Atomic orbital electron populations 1.21729 0.94237 1.00949 1.01492 1.20740 0.94446 0.93472 0.85553 0.94809 1.21163 0.94230 0.95452 0.84778 0.92918 1.45914 1.70383 1.12738 1.07214 1.21265 0.75931 0.87907 0.85077 1.90699 1.51530 1.17537 1.86161 1.19997 1.06842 0.96094 0.86526 1.19524 0.90618 1.10341 1.03376 1.22998 1.01410 0.92383 0.89051 1.48596 1.03344 1.37248 1.25440 1.22345 0.92010 0.96231 0.94074 1.77229 0.91207 1.22832 1.24032 1.22722 0.88137 0.99115 0.97010 1.98375 1.12344 1.91943 1.95049 1.21670 0.96062 1.00071 0.96943 1.22027 1.00028 0.98695 0.96273 1.20633 0.83356 0.96083 0.94868 1.44280 1.03066 1.65966 1.19267 1.19473 0.95313 1.36630 0.86580 0.90918 1.25800 0.98880 1.01023 0.98914 1.70141 1.23523 1.47764 1.16820 0.85342 0.79160 0.77869 0.78547 1.21819 1.22223 1.19102 0.94339 0.90011 0.93414 0.74959 0.83865 0.86542 0.75853 0.89893 0.85279 0.88819 0.93197 0.91632 0.94128 0.91403 0.92595 0.97875 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 7.84 71.98 0.56 -3.76 16 2 C 0.16 6.32 3.03 44.98 0.14 6.46 16 3 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 4 C 0.15 5.24 2.00 45.07 0.09 5.33 16 5 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 6 N -0.71 -17.82 4.58 -442.16 -2.02 -19.85 16 7 C 0.51 13.32 7.79 87.66 0.68 14.01 16 8 O -0.58 -21.22 15.70 -3.03 -0.05 -21.27 16 9 C -0.05 -0.89 6.04 29.11 0.18 -0.71 16 10 C -0.23 -4.74 4.60 -20.12 -0.09 -4.83 16 11 C 0.09 1.40 11.40 83.54 0.95 2.35 16 12 N -0.36 -6.59 4.01 -369.57 -1.48 -8.07 16 13 C 0.09 0.72 11.47 127.77 1.47 2.18 16 14 N -0.33 -8.65 12.58 -49.69 -0.62 -9.28 16 15 C 0.12 3.17 7.84 85.25 0.67 3.84 16 16 Cl 0.00 -0.12 29.16 -2.72 -0.08 -0.20 16 17 C -0.11 -3.89 5.46 30.62 0.17 -3.72 16 18 C -0.13 -5.31 6.08 30.67 0.19 -5.13 16 19 C 0.18 8.61 5.27 86.35 0.45 9.07 16 20 N -0.60 -29.51 3.00 -675.14 -2.02 -31.53 16 21 C -0.25 -13.35 8.59 84.03 0.72 -12.63 16 22 H 0.07 3.77 6.21 -2.91 -0.02 3.75 16 23 C -0.05 -2.83 5.03 84.86 0.43 -2.40 16 24 N -0.94 -54.92 11.03 21.65 0.24 -54.69 16 25 Si 0.96 44.80 29.57 68.60 2.03 46.83 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 H 0.04 1.42 7.42 -2.39 -0.02 1.40 16 30 H 0.08 2.06 7.79 -2.39 -0.02 2.04 16 31 H 0.05 1.77 7.64 -2.38 -0.02 1.75 16 32 H 0.41 7.43 8.60 -92.71 -0.80 6.63 16 33 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.23 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.06 3.12 6.04 -2.39 -0.01 3.10 16 44 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -78.74 380.58 2.79 -75.95 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.21 Total: 12.06 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 6.60 Total: 10.04 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -5.92 Total: -123.41 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.05 Total: -21.27 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.08 Total: -0.20 kcal Total: -78.74 2.79 -75.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993836391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.132 kcal (2) G-P(sol) polarization free energy of solvation -78.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds