Wall clock time and date at job start Sat Apr 11 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47441 * 2 1 4 4 N 1.39923 * 125.74539 * 269.97457 * 3 2 1 5 5 C 1.30415 * 108.95495 * 179.75602 * 4 3 2 6 6 C 1.50701 * 125.97695 * 180.24758 * 5 4 3 7 7 C 1.41336 * 108.04871 * 0.40593 * 5 4 3 8 8 C 1.47303 * 126.43636 * 179.85140 * 7 5 4 9 9 O 1.21612 * 120.00433 * 269.71653 * 8 7 5 10 10 N 1.34787 * 119.99703 * 89.71678 * 8 7 5 11 11 C 1.46924 * 120.63033 * 359.72186 * 10 8 7 12 12 C 1.53187 * 108.77642 * 126.66473 * 11 10 8 13 13 C 1.53041 * 109.31211 * 54.63373 * 12 11 10 14 14 N 1.46503 * 109.46043 * 178.61144 * 13 12 11 15 15 C 1.36936 * 120.00233 * 275.06913 * 14 13 12 16 16 H 1.07998 * 119.99883 * 0.02562 * 15 14 13 17 17 C 1.38805 * 119.99878 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00341 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99973 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47459 * 89.99804 * 19 17 15 21 21 H 1.48505 * 109.46995 * 210.00107 * 19 17 15 22 22 H 1.48507 * 109.46874 * 329.99559 * 19 17 15 23 23 C 1.53038 * 109.53768 * 298.63806 * 13 12 11 24 24 C 1.46926 * 120.62918 * 180.02562 * 10 8 7 25 25 C 1.34349 * 125.75052 * 89.99801 * 3 2 1 26 26 Cl 1.73597 * 126.31688 * 359.97438 * 25 3 2 27 27 H 1.09007 * 109.46774 * 60.00338 * 1 2 3 28 28 H 1.09000 * 109.47343 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46999 * 300.00479 * 1 2 3 30 30 H 1.09003 * 109.47436 * 239.99361 * 2 1 3 31 31 H 1.09007 * 109.46774 * 119.99662 * 2 1 3 32 32 H 1.09000 * 109.46675 * 270.19370 * 6 5 4 33 33 H 1.08996 * 109.47103 * 30.18558 * 6 5 4 34 34 H 1.08994 * 109.47470 * 150.19071 * 6 5 4 35 35 H 1.09003 * 109.58516 * 246.45674 * 11 10 8 36 36 H 1.09002 * 109.58479 * 6.87832 * 11 10 8 37 37 H 1.08999 * 109.49975 * 294.68379 * 12 11 10 38 38 H 1.08998 * 109.50042 * 174.58459 * 12 11 10 39 39 H 1.09007 * 109.44471 * 58.64946 * 13 12 11 40 40 H 0.97000 * 119.99750 * 95.06805 * 14 13 12 41 41 H 0.96998 * 120.00673 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.49677 * 301.40907 * 23 13 12 43 43 H 1.09001 * 109.52131 * 181.33314 * 23 13 12 44 44 H 1.09002 * 109.58798 * 353.11768 * 24 10 8 45 45 H 1.08996 * 109.58781 * 113.40238 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2914 2.1517 -1.1356 5 6 2.7025 3.3306 -0.7589 6 6 3.0962 4.4641 -1.6707 7 6 2.7178 3.3582 0.6541 8 6 3.1190 4.4934 1.5027 9 8 4.2775 4.6110 1.8533 10 7 2.2019 5.4018 1.8906 11 6 0.7997 5.2766 1.4702 12 6 -0.0939 5.3220 2.7136 13 6 0.2123 6.5920 3.5107 14 7 -0.6638 6.6553 4.6833 15 6 -1.9215 7.1851 4.5705 16 1 -2.2678 7.5558 3.6171 17 6 -2.7513 7.2456 5.6816 18 7 -2.3291 6.7942 6.8436 19 14 -4.4673 7.9676 5.5276 20 1 -5.4280 6.8906 5.1779 21 1 -4.8629 8.5836 6.8196 22 1 -4.4750 9.0028 4.4628 23 6 1.6731 6.5707 3.9662 24 6 2.5868 6.5398 2.7366 25 6 2.2800 2.1213 1.0903 26 17 2.1012 1.6176 2.7420 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.1609 4.3972 -1.8945 33 1 2.5255 4.4000 -2.5972 34 1 2.8870 5.4146 -1.1801 35 1 0.5427 6.1010 0.8051 36 1 0.6570 4.3283 0.9520 37 1 0.1012 4.4472 3.3339 38 1 -1.1405 5.3268 2.4095 39 1 0.0407 7.4655 2.8816 40 1 -0.3529 6.3220 5.5395 41 1 -2.9091 6.8361 7.6200 42 1 1.8516 5.6842 4.5748 43 1 1.8844 7.4641 4.5540 44 1 3.6232 6.4250 3.0541 45 1 2.4777 7.4669 2.1738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997328748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:43 Heat of formation + Delta-G solvation = 43.430355 kcal Electronic energy + Delta-G solvation = -28136.734244 eV Core-core repulsion = 24216.990994 eV Total energy + Delta-G solvation = -3919.743250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77033 -39.62685 -37.24590 -37.18856 -35.22959 -34.42147 -32.10039 -31.66637 -31.07565 -30.05845 -29.08296 -27.99200 -25.22847 -24.01967 -22.94894 -22.77218 -21.72644 -20.70118 -20.03323 -18.96010 -17.64411 -17.07160 -16.83727 -15.91290 -15.69174 -15.33418 -14.81680 -14.70965 -14.48273 -13.89540 -13.73114 -13.67795 -13.50860 -13.43608 -13.25552 -12.96588 -12.80191 -12.67350 -12.54891 -12.27249 -12.03322 -11.94199 -11.83156 -11.67262 -11.52965 -10.97870 -10.94134 -10.85265 -10.80568 -10.45392 -10.23701 -9.86151 -9.81232 -9.66567 -9.51235 -8.93980 -8.77475 -8.45540 -6.97909 -5.78153 -3.07170 1.10096 1.21195 2.10719 2.19760 2.60144 3.22112 3.41501 3.46895 3.48593 3.99279 4.43043 4.52751 4.56747 4.68586 4.75113 4.78085 5.10625 5.17115 5.18792 5.27399 5.36865 5.36988 5.38851 5.46654 5.52480 5.55275 5.62473 5.69079 5.69435 5.74813 5.97450 6.05004 6.10312 6.25425 6.31189 6.41101 6.42062 6.53225 6.66223 6.91801 7.05869 7.20622 7.53741 7.67881 8.26943 8.40159 9.51427 10.09363 10.44060 11.44439 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013054 B = 0.003315 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.466626 B = 8443.739341 C = 9226.292550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.121 3.879 3 N -0.350 5.350 4 N -0.273 5.273 5 C 0.117 3.883 6 C -0.076 4.076 7 C -0.249 4.249 8 C 0.597 3.403 9 O -0.538 6.538 10 N -0.594 5.594 11 C 0.112 3.888 12 C -0.149 4.149 13 C 0.180 3.820 14 N -0.724 5.724 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.138 4.138 24 C 0.116 3.884 25 C 0.158 3.842 26 Cl 0.017 6.983 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.869 -11.856 -16.429 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.132 5.132 4 N -0.096 5.096 5 C -0.049 4.049 6 C -0.135 4.135 7 C -0.265 4.265 8 C 0.383 3.617 9 O -0.415 6.415 10 N -0.326 5.326 11 C -0.011 4.011 12 C -0.190 4.190 13 C 0.069 3.931 14 N -0.364 5.364 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.177 4.177 24 C -0.006 4.006 25 C 0.001 3.999 26 Cl 0.045 6.955 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.974 -12.633 -17.092 23.478 hybrid contribution -1.004 0.389 1.235 1.638 sum 8.970 -12.244 -15.857 21.951 Atomic orbital electron populations 1.22203 0.93309 1.03654 1.03834 1.21906 0.96043 0.76832 1.05127 1.48574 1.50170 1.12596 1.01905 1.77232 1.23211 1.03850 1.05338 1.22268 0.96808 0.94262 0.91586 1.20284 1.02529 0.93117 0.97538 1.19728 1.17859 0.94861 0.94099 1.17137 0.84817 0.80852 0.78892 1.90764 1.18495 1.75767 1.56480 1.48099 1.09077 1.25496 1.49974 1.21791 0.79924 1.01639 0.97776 1.22654 0.99008 1.01663 0.95674 1.20165 0.88497 0.94486 0.89923 1.42434 1.13531 1.73621 1.06829 1.19230 0.90488 1.32286 0.94995 0.91186 1.24731 0.98562 1.01939 0.95634 1.69659 1.36521 1.52252 0.99637 0.86227 0.84754 0.78659 0.76763 1.21794 1.21803 1.20741 1.22205 0.96012 1.02765 0.96758 1.21661 1.00074 0.87498 0.91369 1.21964 1.01914 0.92006 0.83993 1.98461 1.95869 1.90871 1.10308 0.91206 0.89950 0.91486 0.87795 0.88509 0.89695 0.90016 0.90016 0.91461 0.90981 0.92225 0.90815 0.93381 0.78277 0.93524 0.91819 0.90477 0.89245 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.24 37.16 0.38 -0.79 16 2 C 0.12 0.90 6.97 -4.04 -0.03 0.88 16 3 N -0.35 -3.94 3.58 -57.57 -0.21 -4.15 16 4 N -0.27 -3.35 12.49 33.90 0.42 -2.92 16 5 C 0.12 1.44 7.26 -82.02 -0.60 0.84 16 6 C -0.08 -0.70 10.28 36.01 0.37 -0.33 16 7 C -0.25 -3.47 3.87 -105.02 -0.41 -3.88 16 8 C 0.60 9.28 7.08 -12.57 -0.09 9.19 16 9 O -0.54 -9.90 16.52 5.27 0.09 -9.82 16 10 N -0.59 -8.61 2.97 -174.06 -0.52 -9.13 16 11 C 0.11 1.55 6.34 -3.71 -0.02 1.52 16 12 C -0.15 -2.52 5.66 -26.61 -0.15 -2.67 16 13 C 0.18 3.39 2.73 -67.89 -0.19 3.21 16 14 N -0.72 -17.61 5.12 -53.38 -0.27 -17.88 16 15 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 19 Si 0.90 22.01 29.55 -169.99 -5.02 16.98 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.14 -2.27 5.55 -26.59 -0.15 -2.42 16 24 C 0.12 1.66 6.43 -3.69 -0.02 1.64 16 25 C 0.16 2.04 7.43 -16.44 -0.12 1.92 16 26 Cl 0.02 0.21 28.56 -51.86 -1.48 -1.27 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.60 7.77 -51.93 -0.40 0.20 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.73 8.01 -51.93 -0.42 0.32 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.97 6.25 -51.93 -0.32 0.64 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.05 0.92 8.08 -51.92 -0.42 0.50 16 40 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 41 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.09 1.31 7.01 -51.93 -0.36 0.95 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 387.20 15.07 5.84 5.84 Total: -1.00 -32.87 387.20 -8.56 -41.43 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.86 Total: 5.94 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.27 Total: 2.08 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.15 Total: -61.18 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -1.48 Total: -1.27 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.87 -8.56 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997328748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.863 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds