Wall clock time and date at job start Sat Apr 11 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47441 * 2 1 4 4 N 1.39923 * 125.74539 * 269.97457 * 3 2 1 5 5 C 1.30415 * 108.95495 * 179.75602 * 4 3 2 6 6 C 1.50701 * 125.97695 * 180.24758 * 5 4 3 7 7 C 1.41336 * 108.04871 * 0.40593 * 5 4 3 8 8 C 1.47303 * 126.43636 * 179.85140 * 7 5 4 9 9 O 1.21612 * 120.00433 * 269.71653 * 8 7 5 10 10 N 1.34787 * 119.99703 * 89.71678 * 8 7 5 11 11 C 1.46924 * 120.63033 * 359.72186 * 10 8 7 12 12 C 1.53187 * 108.77642 * 126.66473 * 11 10 8 13 13 C 1.53041 * 109.31211 * 54.63373 * 12 11 10 14 14 N 1.46503 * 109.46043 * 178.61144 * 13 12 11 15 15 C 1.36936 * 120.00233 * 275.06913 * 14 13 12 16 16 H 1.07998 * 119.99883 * 0.02562 * 15 14 13 17 17 C 1.38805 * 119.99878 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00341 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99973 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47459 * 89.99804 * 19 17 15 21 21 H 1.48505 * 109.46995 * 210.00107 * 19 17 15 22 22 H 1.48507 * 109.46874 * 329.99559 * 19 17 15 23 23 C 1.53038 * 109.53768 * 298.63806 * 13 12 11 24 24 C 1.46926 * 120.62918 * 180.02562 * 10 8 7 25 25 C 1.34349 * 125.75052 * 89.99801 * 3 2 1 26 26 Cl 1.73597 * 126.31688 * 359.97438 * 25 3 2 27 27 H 1.09007 * 109.46774 * 60.00338 * 1 2 3 28 28 H 1.09000 * 109.47343 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46999 * 300.00479 * 1 2 3 30 30 H 1.09003 * 109.47436 * 239.99361 * 2 1 3 31 31 H 1.09007 * 109.46774 * 119.99662 * 2 1 3 32 32 H 1.09000 * 109.46675 * 270.19370 * 6 5 4 33 33 H 1.08996 * 109.47103 * 30.18558 * 6 5 4 34 34 H 1.08994 * 109.47470 * 150.19071 * 6 5 4 35 35 H 1.09003 * 109.58516 * 246.45674 * 11 10 8 36 36 H 1.09002 * 109.58479 * 6.87832 * 11 10 8 37 37 H 1.08999 * 109.49975 * 294.68379 * 12 11 10 38 38 H 1.08998 * 109.50042 * 174.58459 * 12 11 10 39 39 H 1.09007 * 109.44471 * 58.64946 * 13 12 11 40 40 H 0.97000 * 119.99750 * 95.06805 * 14 13 12 41 41 H 0.96998 * 120.00673 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.49677 * 301.40907 * 23 13 12 43 43 H 1.09001 * 109.52131 * 181.33314 * 23 13 12 44 44 H 1.09002 * 109.58798 * 353.11768 * 24 10 8 45 45 H 1.08996 * 109.58781 * 113.40238 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2914 2.1517 -1.1356 5 6 2.7025 3.3306 -0.7589 6 6 3.0962 4.4641 -1.6707 7 6 2.7178 3.3582 0.6541 8 6 3.1190 4.4934 1.5027 9 8 4.2775 4.6110 1.8533 10 7 2.2019 5.4018 1.8906 11 6 0.7997 5.2766 1.4702 12 6 -0.0939 5.3220 2.7136 13 6 0.2123 6.5920 3.5107 14 7 -0.6638 6.6553 4.6833 15 6 -1.9215 7.1851 4.5705 16 1 -2.2678 7.5558 3.6171 17 6 -2.7513 7.2456 5.6816 18 7 -2.3291 6.7942 6.8436 19 14 -4.4673 7.9676 5.5276 20 1 -5.4280 6.8906 5.1779 21 1 -4.8629 8.5836 6.8196 22 1 -4.4750 9.0028 4.4628 23 6 1.6731 6.5707 3.9662 24 6 2.5868 6.5398 2.7366 25 6 2.2800 2.1213 1.0903 26 17 2.1012 1.6176 2.7420 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.1609 4.3972 -1.8945 33 1 2.5255 4.4000 -2.5972 34 1 2.8870 5.4146 -1.1801 35 1 0.5427 6.1010 0.8051 36 1 0.6570 4.3283 0.9520 37 1 0.1012 4.4472 3.3339 38 1 -1.1405 5.3268 2.4095 39 1 0.0407 7.4655 2.8816 40 1 -0.3529 6.3220 5.5395 41 1 -2.9091 6.8361 7.6200 42 1 1.8516 5.6842 4.5748 43 1 1.8844 7.4641 4.5540 44 1 3.6232 6.4250 3.0541 45 1 2.4777 7.4669 2.1738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997328748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:43 Heat of formation + Delta-G solvation = 23.101296 kcal Electronic energy + Delta-G solvation = -28137.615778 eV Core-core repulsion = 24216.990994 eV Total energy + Delta-G solvation = -3920.624785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.70655 -40.84686 -38.65460 -38.16715 -36.12976 -35.95700 -33.82877 -32.42684 -32.32860 -31.29887 -30.63233 -28.74664 -26.73701 -25.23402 -24.35776 -23.93946 -22.81194 -21.80529 -21.18636 -20.17264 -19.07575 -18.62216 -17.91404 -16.96680 -16.74077 -16.62924 -16.34573 -15.61857 -15.47697 -15.39765 -15.31870 -14.99264 -14.71330 -14.39717 -14.34921 -14.13768 -13.69719 -13.64848 -13.38669 -13.30382 -13.17794 -13.13220 -12.89729 -12.82505 -12.69989 -12.61462 -12.29886 -12.19492 -12.13626 -11.98774 -11.88079 -11.68180 -11.29089 -11.09666 -10.86393 -10.38078 -9.77984 -9.69728 -8.98255 -7.90968 -5.19421 0.14710 0.25834 1.16686 1.38282 1.42219 1.49560 1.50387 1.58780 2.07408 2.58562 3.16556 3.42389 3.62744 3.69006 3.84169 3.93618 3.95864 4.00219 4.09624 4.17692 4.22168 4.24431 4.39091 4.41786 4.63818 4.65306 4.68831 4.72440 4.76773 4.78854 4.86801 4.88702 4.94560 5.04530 5.08768 5.14677 5.28896 5.33749 5.50552 5.51653 5.56187 5.62892 6.29568 6.30648 6.34879 7.07049 7.36905 8.12923 8.35882 9.32763 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013054 B = 0.003315 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.466626 B = 8443.739341 C = 9226.292550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.111 3.889 3 N -0.344 5.344 4 N -0.281 5.281 5 C 0.116 3.884 6 C -0.076 4.076 7 C -0.274 4.274 8 C 0.602 3.398 9 O -0.571 6.571 10 N -0.592 5.592 11 C 0.124 3.876 12 C -0.137 4.137 13 C 0.175 3.825 14 N -0.738 5.738 15 C -0.233 4.233 16 H 0.080 0.920 17 C -0.076 4.076 18 N -0.972 5.972 19 Si 0.968 3.032 20 H -0.289 1.289 21 H -0.300 1.300 22 H -0.267 1.267 23 C -0.128 4.128 24 C 0.122 3.878 25 C 0.153 3.847 26 Cl 0.014 6.986 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.050 0.950 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.370 0.630 41 H 0.249 0.751 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.665 -12.002 -18.854 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.008 4.008 3 N -0.126 5.126 4 N -0.104 5.104 5 C -0.050 4.050 6 C -0.134 4.134 7 C -0.290 4.290 8 C 0.389 3.611 9 O -0.451 6.451 10 N -0.324 5.324 11 C 0.001 3.999 12 C -0.178 4.178 13 C 0.067 3.933 14 N -0.376 5.376 15 C -0.365 4.365 16 H 0.097 0.903 17 C -0.268 4.268 18 N -0.623 5.623 19 Si 0.798 3.202 20 H -0.217 1.217 21 H -0.227 1.227 22 H -0.192 1.192 23 C -0.166 4.166 24 C 0.000 4.000 25 C -0.005 4.005 26 Cl 0.043 6.957 27 H 0.080 0.920 28 H 0.126 0.874 29 H 0.069 0.931 30 H 0.141 0.859 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.201 0.799 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.770 -12.788 -19.589 25.352 hybrid contribution -0.894 0.361 1.952 2.177 sum 8.876 -12.427 -17.637 23.330 Atomic orbital electron populations 1.22169 0.92677 1.04973 1.02561 1.22300 0.96534 0.75254 1.06716 1.48923 1.49097 1.13422 1.01146 1.77214 1.23512 1.03995 1.05723 1.22690 0.96224 0.94916 0.91210 1.20410 1.03276 0.92038 0.97719 1.19720 1.19672 0.94803 0.94829 1.17321 0.84315 0.80951 0.78501 1.90743 1.19891 1.76548 1.57882 1.48133 1.09210 1.25351 1.49665 1.21717 0.78717 1.03153 0.96293 1.22424 0.99175 0.99646 0.96529 1.20403 0.88945 0.95462 0.88500 1.42661 1.13628 1.73468 1.07882 1.19635 0.91269 1.30569 0.95046 0.90251 1.25510 1.02333 1.03460 0.95540 1.69822 1.37709 1.54517 1.00272 0.85209 0.80392 0.78072 0.76525 1.21655 1.22665 1.19166 1.22064 0.94884 1.02048 0.97651 1.21634 0.99180 0.88526 0.90652 1.22027 1.01974 0.92213 0.84319 1.98459 1.95874 1.90868 1.10544 0.92014 0.87372 0.93080 0.85903 0.87266 0.88926 0.88218 0.89800 0.89038 0.90178 0.93943 0.91810 0.92801 0.79874 0.94248 0.93389 0.90490 0.89450 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 71.98 0.74 -1.23 16 2 C 0.11 1.44 6.97 86.38 0.60 2.04 16 3 N -0.34 -7.22 3.58 -336.05 -1.20 -8.43 16 4 N -0.28 -6.38 12.49 -46.66 -0.58 -6.96 16 5 C 0.12 2.64 7.26 43.53 0.32 2.95 16 6 C -0.08 -1.22 10.28 71.24 0.73 -0.49 16 7 C -0.27 -7.31 3.87 -20.12 -0.08 -7.38 16 8 C 0.60 18.10 7.08 86.63 0.61 18.71 16 9 O -0.57 -20.75 16.52 -4.07 -0.07 -20.82 16 10 N -0.59 -16.28 2.97 -822.86 -2.45 -18.73 16 11 C 0.12 3.18 6.34 86.36 0.55 3.73 16 12 C -0.14 -4.52 5.66 30.67 0.17 -4.35 16 13 C 0.18 6.49 2.73 45.02 0.12 6.61 16 14 N -0.74 -36.08 5.12 -322.81 -1.65 -37.73 16 15 C -0.23 -12.50 9.93 84.03 0.83 -11.67 16 16 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 17 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 18 N -0.97 -59.14 13.06 21.65 0.28 -58.86 16 19 Si 0.97 45.30 29.55 68.60 2.03 47.33 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 21 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 C -0.13 -4.12 5.55 30.68 0.17 -3.95 16 24 C 0.12 3.31 6.43 86.37 0.56 3.86 16 25 C 0.15 3.80 7.43 84.32 0.63 4.43 16 26 Cl 0.01 0.35 28.56 -2.72 -0.08 0.28 16 27 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.11 1.16 7.77 -2.38 -0.02 1.14 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.30 8.01 -2.39 -0.02 1.28 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 2.00 6.25 -2.39 -0.01 1.98 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.96 8.08 -2.38 -0.02 1.94 16 40 H 0.37 19.90 7.80 -92.71 -0.72 19.17 16 41 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.09 2.47 7.01 -2.39 -0.02 2.45 16 45 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -70.83 387.20 2.98 -67.84 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.28 Total: 26.64 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.42 Total: 9.43 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -5.60 Total: -130.70 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.07 Total: -20.82 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -0.08 Total: 0.28 kcal Total: -70.83 2.98 -67.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997328748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.946 kcal (2) G-P(sol) polarization free energy of solvation -70.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds