Wall clock time and date at job start Sat Apr 11 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47506 * 2 1 4 4 N 1.46499 * 109.46826 * 120.00459 * 2 1 3 5 5 C 1.34780 * 119.99759 * 274.99563 * 4 2 1 6 6 O 1.21614 * 119.99796 * 0.02562 * 5 4 2 7 7 C 1.47387 * 120.00189 * 180.27607 * 5 4 2 8 8 C 1.38073 * 126.41915 * 359.43943 * 7 5 4 9 9 N 1.34231 * 107.43348 * 179.86622 * 8 7 5 10 10 C 1.46503 * 125.73761 * 180.14066 * 9 8 7 11 11 N 1.39927 * 108.52556 * 0.39681 * 9 8 7 12 12 C 1.30530 * 108.89316 * 359.74963 * 11 9 8 13 13 Cl 1.73607 * 126.00200 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47113 * 239.99863 * 2 1 3 15 15 C 1.53032 * 109.45945 * 180.02562 * 14 2 1 16 16 C 1.53199 * 109.31200 * 178.61896 * 15 14 2 17 17 N 1.46927 * 108.77706 * 54.62933 * 16 15 14 18 18 C 1.36935 * 120.62816 * 126.41450 * 17 16 15 19 19 H 1.07991 * 119.99900 * 207.65765 * 18 17 16 20 20 C 1.38821 * 119.99923 * 27.66002 * 18 17 16 21 21 N 1.31615 * 119.99829 * 17.37440 * 20 18 17 22 22 Si 1.86801 * 119.99864 * 197.37305 * 20 18 17 23 23 H 1.48498 * 109.46910 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46473 * 120.00127 * 22 20 18 25 25 H 1.48494 * 109.47142 * 239.99979 * 22 20 18 26 26 C 1.46925 * 118.73685 * 306.39597 * 17 16 15 27 27 C 1.53044 * 109.45628 * 60.00218 * 14 2 1 28 28 H 1.08996 * 109.47506 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46835 * 300.00348 * 1 2 3 30 30 H 1.09000 * 109.46940 * 59.99691 * 1 2 3 31 31 H 0.96998 * 120.00414 * 95.00040 * 4 2 1 32 32 H 1.07995 * 126.28282 * 0.02562 * 8 7 5 33 33 H 1.08999 * 109.47164 * 270.27658 * 10 9 8 34 34 H 1.08998 * 109.47044 * 30.27308 * 10 9 8 35 35 H 1.08996 * 109.47313 * 150.27300 * 10 9 8 36 36 H 1.09003 * 109.45908 * 300.03360 * 14 2 1 37 37 H 1.08999 * 109.49812 * 298.56340 * 15 14 2 38 38 H 1.08996 * 109.50210 * 58.66400 * 15 14 2 39 39 H 1.09000 * 109.58096 * 294.84088 * 16 15 14 40 40 H 1.08998 * 109.58590 * 174.42105 * 16 15 14 41 41 H 0.97001 * 119.99840 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.58823 * 293.81655 * 26 17 16 43 43 H 1.09000 * 109.58258 * 173.39567 * 26 17 16 44 44 H 1.09000 * 109.49695 * 301.33312 * 27 14 2 45 45 H 1.08998 * 109.49726 * 61.43504 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8575 1.1615 2.4118 7 6 2.6440 -0.7117 3.5591 8 6 3.0040 -2.0417 3.6482 9 7 3.4020 -2.2668 4.9103 10 6 3.8726 -3.5477 5.4434 11 7 3.2861 -1.0740 5.6325 12 6 2.8358 -0.1411 4.8383 13 17 2.5273 1.5104 5.2759 14 6 2.0401 -0.7213 -1.2493 15 6 3.5704 -0.7217 -1.2487 16 6 4.0773 -1.4745 -2.4829 17 7 3.4744 -0.8769 -3.6821 18 6 4.2601 -0.4514 -4.7197 19 1 3.9210 0.3487 -5.3609 20 6 5.4924 -1.0485 -4.9475 21 7 5.7653 -2.2194 -4.4121 22 14 6.7634 -0.1900 -6.0139 23 1 6.2151 1.1045 -6.4922 24 1 7.9921 0.0572 -5.2174 25 1 7.0934 -1.0492 -7.1792 26 6 2.0125 -0.7450 -3.7469 27 6 1.5298 0.0004 -2.4986 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.2490 -1.6319 1.1526 32 1 2.9736 -2.7670 2.8486 33 1 3.0253 -4.1132 5.8311 34 1 4.3560 -4.1163 4.6490 35 1 4.5867 -3.3665 6.2467 36 1 1.6761 -1.7488 -1.2493 37 1 3.9345 0.3054 -1.2742 38 1 3.9338 -1.2147 -0.3471 39 1 3.7907 -2.5239 -2.4139 40 1 5.1627 -1.3931 -2.5402 41 1 6.6263 -2.6368 -4.5715 42 1 1.5575 -1.7349 -3.7811 43 1 1.7356 -0.1823 -4.6383 44 1 0.4400 0.0215 -2.4870 45 1 1.9137 1.0204 -2.5119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997387438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:46 Heat of formation + Delta-G solvation = 52.344984 kcal Electronic energy + Delta-G solvation = -27553.817841 eV Core-core repulsion = 23634.461158 eV Total energy + Delta-G solvation = -3919.356683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.76219 -39.53748 -37.79574 -36.88561 -35.24430 -33.59642 -32.95851 -31.52628 -30.28262 -30.20826 -28.70462 -27.38527 -25.41265 -23.79056 -22.54535 -21.95524 -21.52841 -20.53971 -20.23359 -19.14226 -18.07723 -16.79739 -16.34534 -16.22543 -15.81779 -15.36501 -14.88342 -14.64045 -14.20277 -14.09886 -13.72129 -13.60086 -13.48747 -13.32436 -13.20886 -13.12316 -12.85395 -12.36953 -12.19966 -11.91083 -11.77809 -11.63066 -11.47035 -11.18036 -10.98528 -10.95549 -10.68346 -10.40271 -10.20846 -10.15133 -9.90019 -9.79956 -9.74287 -9.48786 -9.42955 -9.11349 -8.80256 -8.46358 -6.66169 -5.78816 -3.19907 1.10383 1.17465 1.69315 2.38465 3.28847 3.37376 3.40146 3.45625 3.48056 4.01789 4.24237 4.50598 4.63092 4.76565 4.90032 4.92762 4.99060 5.13547 5.27225 5.35117 5.40998 5.54488 5.60142 5.66063 5.78343 5.86429 6.03155 6.11846 6.18780 6.27495 6.31905 6.35409 6.50646 6.60015 6.68758 6.71024 6.79947 6.86847 6.94079 7.00794 7.38359 7.63925 7.65321 7.80740 8.36628 8.45812 9.22445 9.86315 10.42570 11.29620 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.002686 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.201427 B =10420.382556 C =11126.326783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.087 0.913 4 N -0.717 5.717 5 C 0.590 3.410 6 O -0.530 6.530 7 C -0.272 4.272 8 C 0.111 3.889 9 N -0.349 5.349 10 C 0.095 3.905 11 N -0.287 5.287 12 C 0.172 3.828 13 Cl 0.032 6.968 14 C -0.084 4.084 15 C -0.133 4.133 16 C 0.172 3.828 17 N -0.593 5.593 18 C -0.249 4.249 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.904 5.904 22 Si 0.900 3.100 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.146 3.854 27 C -0.126 4.126 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.394 0.606 32 H 0.193 0.807 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.015 0.985 40 H 0.086 0.914 41 H 0.252 0.748 42 H 0.016 0.984 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.664 -3.819 19.338 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.105 0.895 4 N -0.367 5.367 5 C 0.376 3.624 6 O -0.407 6.407 7 C -0.288 4.288 8 C -0.040 4.040 9 N -0.129 5.129 10 C -0.045 4.045 11 N -0.112 5.112 12 C -0.021 4.021 13 Cl 0.060 6.940 14 C -0.103 4.103 15 C -0.172 4.172 16 C 0.046 3.954 17 N -0.315 5.315 18 C -0.379 4.379 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.549 5.549 22 Si 0.730 3.270 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.019 3.981 27 C -0.166 4.166 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.228 0.772 32 H 0.210 0.790 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.033 0.967 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.034 0.966 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.314 -3.308 20.611 22.119 hybrid contribution 0.630 0.010 -1.233 1.385 sum -6.684 -3.298 19.377 20.761 Atomic orbital electron populations 1.22209 0.95735 1.01765 1.02294 1.21132 0.93443 0.97676 0.83414 0.89488 1.45896 1.67645 1.13696 1.09512 1.17060 0.77416 0.86154 0.81735 1.90808 1.50359 1.14941 1.84603 1.20249 1.19287 0.93573 0.95702 1.23194 0.95449 0.96707 0.88680 1.48188 1.48582 1.08907 1.07224 1.22124 1.01319 0.79249 1.01817 1.77239 1.24603 0.90511 1.18815 1.22677 0.98619 0.89448 0.91372 1.98432 1.93390 1.09139 1.93005 1.21326 0.97173 0.98937 0.92841 1.22217 0.93642 1.01668 0.99712 1.20763 0.99420 0.92569 0.82670 1.44066 0.99567 1.72014 1.15903 1.19240 0.99100 1.12030 1.07486 0.91690 1.25013 1.00040 0.95359 0.99344 1.70041 1.22600 1.14143 1.48094 0.86252 0.81784 0.79162 0.79781 1.20241 1.21601 1.21792 1.20894 0.86039 0.96377 0.94745 1.22081 0.98744 1.00048 0.95682 0.92813 0.92587 0.91226 0.77181 0.78990 0.89796 0.88333 0.88512 0.91598 0.92642 0.93599 0.96705 0.89610 0.93810 0.96602 0.92844 0.92658 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.13 37.16 0.34 -1.62 16 2 C 0.15 2.00 2.16 -67.93 -0.15 1.85 16 3 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 4 N -0.72 -8.64 4.35 -54.89 -0.24 -8.88 16 5 C 0.59 8.25 7.78 -12.54 -0.10 8.15 16 6 O -0.53 -9.19 15.38 5.26 0.08 -9.11 16 7 C -0.27 -3.31 6.13 -105.04 -0.64 -3.95 16 8 C 0.11 0.93 10.99 -16.56 -0.18 0.74 16 9 N -0.35 -2.98 3.98 -67.60 -0.27 -3.25 16 10 C 0.10 0.35 11.44 59.85 0.68 1.03 16 11 N -0.29 -3.46 12.50 33.18 0.41 -3.04 16 12 C 0.17 2.26 7.88 -16.91 -0.13 2.13 16 13 Cl 0.03 0.43 28.00 -51.86 -1.45 -1.02 16 14 C -0.08 -1.26 1.79 -90.58 -0.16 -1.42 16 15 C -0.13 -2.38 5.22 -26.61 -0.14 -2.52 16 16 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 17 N -0.59 -14.46 2.99 -172.32 -0.52 -14.97 16 18 C -0.25 -6.76 9.59 -15.06 -0.14 -6.90 16 19 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 20 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 21 N -0.90 -25.79 11.19 55.49 0.62 -25.17 16 22 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.15 2.94 6.52 -3.71 -0.02 2.91 16 27 C -0.13 -2.05 5.04 -26.61 -0.13 -2.18 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 31 H 0.39 3.72 7.31 -40.82 -0.30 3.42 16 32 H 0.19 0.80 7.46 -52.49 -0.39 0.41 16 33 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.10 0.13 8.14 -51.93 -0.42 -0.30 16 35 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.72 7.41 -51.93 -0.38 0.33 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 2.24 6.04 -51.93 -0.31 1.92 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 44 H 0.05 0.76 6.36 -51.93 -0.33 0.43 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -34.15 377.27 -8.22 -42.37 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.63 Total: -1.24 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.89 Total: 2.04 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.01 Total: -55.31 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -1.45 Total: -1.02 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.15 -8.22 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997387438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.717 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds