Wall clock time and date at job start Sat Apr 11 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47506 * 2 1 4 4 N 1.46499 * 109.46826 * 120.00459 * 2 1 3 5 5 C 1.34780 * 119.99759 * 274.99563 * 4 2 1 6 6 O 1.21614 * 119.99796 * 0.02562 * 5 4 2 7 7 C 1.47387 * 120.00189 * 180.27607 * 5 4 2 8 8 C 1.38073 * 126.41915 * 359.43943 * 7 5 4 9 9 N 1.34231 * 107.43348 * 179.86622 * 8 7 5 10 10 C 1.46503 * 125.73761 * 180.14066 * 9 8 7 11 11 N 1.39927 * 108.52556 * 0.39681 * 9 8 7 12 12 C 1.30530 * 108.89316 * 359.74963 * 11 9 8 13 13 Cl 1.73607 * 126.00200 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47113 * 239.99863 * 2 1 3 15 15 C 1.53032 * 109.45945 * 180.02562 * 14 2 1 16 16 C 1.53199 * 109.31200 * 178.61896 * 15 14 2 17 17 N 1.46927 * 108.77706 * 54.62933 * 16 15 14 18 18 C 1.36935 * 120.62816 * 126.41450 * 17 16 15 19 19 H 1.07991 * 119.99900 * 207.65765 * 18 17 16 20 20 C 1.38821 * 119.99923 * 27.66002 * 18 17 16 21 21 N 1.31615 * 119.99829 * 17.37440 * 20 18 17 22 22 Si 1.86801 * 119.99864 * 197.37305 * 20 18 17 23 23 H 1.48498 * 109.46910 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46473 * 120.00127 * 22 20 18 25 25 H 1.48494 * 109.47142 * 239.99979 * 22 20 18 26 26 C 1.46925 * 118.73685 * 306.39597 * 17 16 15 27 27 C 1.53044 * 109.45628 * 60.00218 * 14 2 1 28 28 H 1.08996 * 109.47506 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46835 * 300.00348 * 1 2 3 30 30 H 1.09000 * 109.46940 * 59.99691 * 1 2 3 31 31 H 0.96998 * 120.00414 * 95.00040 * 4 2 1 32 32 H 1.07995 * 126.28282 * 0.02562 * 8 7 5 33 33 H 1.08999 * 109.47164 * 270.27658 * 10 9 8 34 34 H 1.08998 * 109.47044 * 30.27308 * 10 9 8 35 35 H 1.08996 * 109.47313 * 150.27300 * 10 9 8 36 36 H 1.09003 * 109.45908 * 300.03360 * 14 2 1 37 37 H 1.08999 * 109.49812 * 298.56340 * 15 14 2 38 38 H 1.08996 * 109.50210 * 58.66400 * 15 14 2 39 39 H 1.09000 * 109.58096 * 294.84088 * 16 15 14 40 40 H 1.08998 * 109.58590 * 174.42105 * 16 15 14 41 41 H 0.97001 * 119.99840 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.58823 * 293.81655 * 26 17 16 43 43 H 1.09000 * 109.58258 * 173.39567 * 26 17 16 44 44 H 1.09000 * 109.49695 * 301.33312 * 27 14 2 45 45 H 1.08998 * 109.49726 * 61.43504 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8575 1.1615 2.4118 7 6 2.6440 -0.7117 3.5591 8 6 3.0040 -2.0417 3.6482 9 7 3.4020 -2.2668 4.9103 10 6 3.8726 -3.5477 5.4434 11 7 3.2861 -1.0740 5.6325 12 6 2.8358 -0.1411 4.8383 13 17 2.5273 1.5104 5.2759 14 6 2.0401 -0.7213 -1.2493 15 6 3.5704 -0.7217 -1.2487 16 6 4.0773 -1.4745 -2.4829 17 7 3.4744 -0.8769 -3.6821 18 6 4.2601 -0.4514 -4.7197 19 1 3.9210 0.3487 -5.3609 20 6 5.4924 -1.0485 -4.9475 21 7 5.7653 -2.2194 -4.4121 22 14 6.7634 -0.1900 -6.0139 23 1 6.2151 1.1045 -6.4922 24 1 7.9921 0.0572 -5.2174 25 1 7.0934 -1.0492 -7.1792 26 6 2.0125 -0.7450 -3.7469 27 6 1.5298 0.0004 -2.4986 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.2490 -1.6319 1.1526 32 1 2.9736 -2.7670 2.8486 33 1 3.0253 -4.1132 5.8311 34 1 4.3560 -4.1163 4.6490 35 1 4.5867 -3.3665 6.2467 36 1 1.6761 -1.7488 -1.2493 37 1 3.9345 0.3054 -1.2742 38 1 3.9338 -1.2147 -0.3471 39 1 3.7907 -2.5239 -2.4139 40 1 5.1627 -1.3931 -2.5402 41 1 6.6263 -2.6368 -4.5715 42 1 1.5575 -1.7349 -3.7811 43 1 1.7356 -0.1823 -4.6383 44 1 0.4400 0.0215 -2.4870 45 1 1.9137 1.0204 -2.5119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997387438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:45 Heat of formation + Delta-G solvation = 29.805370 kcal Electronic energy + Delta-G solvation = -27554.795232 eV Core-core repulsion = 23634.461158 eV Total energy + Delta-G solvation = -3920.334074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.53374 -40.65367 -39.19544 -37.81855 -36.68029 -34.51405 -34.22079 -32.88552 -31.78452 -31.42975 -30.00430 -27.93648 -27.11339 -25.04764 -23.76445 -23.48559 -22.36630 -21.71553 -21.28340 -20.59311 -19.01886 -18.56910 -17.31097 -16.97062 -16.82647 -16.73281 -16.13085 -15.75218 -15.63597 -15.25460 -15.08871 -14.82869 -14.70903 -14.52664 -14.21168 -14.08205 -13.93096 -13.56328 -13.43762 -13.15474 -13.00565 -12.73749 -12.65592 -12.62893 -12.55503 -12.34009 -12.11640 -11.92232 -11.88192 -11.75418 -11.40325 -11.16543 -11.04146 -10.77467 -10.53207 -10.50134 -10.06913 -9.72398 -8.62316 -7.84840 -5.27843 0.38344 0.41170 0.76152 1.45409 1.48463 1.57946 1.72996 2.30862 2.42000 2.52911 3.29210 3.36474 3.71639 3.76495 3.84285 4.06345 4.10470 4.13161 4.24056 4.44667 4.45919 4.50846 4.56694 4.64584 4.67653 4.74023 4.79450 4.80964 4.90979 4.99850 5.07265 5.14054 5.19397 5.30299 5.36086 5.46015 5.51639 5.58153 5.64683 5.71167 5.74252 5.86007 6.16018 6.43323 6.70757 7.19741 7.38671 7.92929 8.42174 9.20813 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.002686 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.201427 B =10420.382556 C =11126.326783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.158 3.842 3 H 0.060 0.940 4 N -0.706 5.706 5 C 0.590 3.410 6 O -0.573 6.573 7 C -0.306 4.306 8 C 0.140 3.860 9 N -0.340 5.340 10 C 0.083 3.917 11 N -0.312 5.312 12 C 0.152 3.848 13 Cl 0.015 6.985 14 C -0.071 4.071 15 C -0.119 4.119 16 C 0.178 3.822 17 N -0.613 5.613 18 C -0.260 4.260 19 H 0.061 0.939 20 C -0.049 4.049 21 N -0.931 5.931 22 Si 0.959 3.041 23 H -0.271 1.271 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.141 3.859 27 C -0.116 4.116 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.410 0.590 32 H 0.240 0.760 33 H 0.103 0.897 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.032 0.968 38 H 0.071 0.929 39 H 0.005 0.995 40 H 0.046 0.954 41 H 0.249 0.751 42 H 0.021 0.979 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.523 -5.689 19.838 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.078 0.922 4 N -0.357 5.357 5 C 0.378 3.622 6 O -0.453 6.453 7 C -0.321 4.321 8 C -0.014 4.014 9 N -0.119 5.119 10 C -0.055 4.055 11 N -0.137 5.137 12 C -0.040 4.040 13 Cl 0.042 6.958 14 C -0.090 4.090 15 C -0.158 4.158 16 C 0.053 3.947 17 N -0.337 5.337 18 C -0.390 4.390 19 H 0.079 0.921 20 C -0.245 4.245 21 N -0.577 5.577 22 Si 0.788 3.212 23 H -0.195 1.195 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.016 3.984 27 C -0.156 4.156 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.247 0.753 32 H 0.257 0.743 33 H 0.121 0.879 34 H 0.149 0.851 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.023 0.977 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.039 0.961 43 H 0.067 0.933 44 H 0.108 0.892 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.186 -5.207 21.136 23.256 hybrid contribution 0.904 0.470 -1.371 1.708 sum -7.282 -4.736 19.765 21.590 Atomic orbital electron populations 1.22141 0.94055 1.02967 1.02125 1.20861 0.94569 0.96112 0.83135 0.92190 1.45715 1.67181 1.14321 1.08508 1.17312 0.76716 0.85717 0.82460 1.90783 1.52327 1.16870 1.85311 1.20189 1.21991 0.95287 0.94662 1.23807 0.92371 0.95824 0.89351 1.48643 1.47013 1.09062 1.07195 1.22615 1.02374 0.77355 1.03186 1.77168 1.25095 0.91681 1.19794 1.22815 0.99772 0.89179 0.92273 1.98411 1.93574 1.10614 1.93154 1.21194 0.94783 1.00001 0.93046 1.22005 0.95851 0.99659 0.98264 1.20589 0.97255 0.92633 0.84266 1.44355 1.01348 1.72138 1.15852 1.19514 0.99856 1.11748 1.07911 0.92122 1.25679 1.01682 0.96039 1.01071 1.70163 1.22723 1.15272 1.49568 0.85323 0.79351 0.78356 0.78143 1.19508 1.21832 1.21791 1.21066 0.83693 0.97045 0.96623 1.21963 1.00738 0.98632 0.94236 0.90841 0.93646 0.90571 0.75295 0.74341 0.87898 0.85099 0.88426 0.89723 0.94872 0.91056 0.97700 0.93506 0.94201 0.96060 0.93320 0.89192 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.13 71.98 0.66 -2.64 16 2 C 0.16 3.94 2.16 44.99 0.10 4.04 16 3 H 0.06 1.88 7.58 -2.39 -0.02 1.86 16 4 N -0.71 -15.23 4.35 -445.82 -1.94 -17.17 16 5 C 0.59 15.84 7.78 86.65 0.67 16.52 16 6 O -0.57 -20.04 15.38 -4.08 -0.06 -20.10 16 7 C -0.31 -6.95 6.13 -20.13 -0.12 -7.08 16 8 C 0.14 1.83 10.99 84.29 0.93 2.75 16 9 N -0.34 -4.78 3.98 -367.78 -1.46 -6.24 16 10 C 0.08 0.29 11.44 127.77 1.46 1.75 16 11 N -0.31 -7.17 12.50 -48.95 -0.61 -7.79 16 12 C 0.15 3.95 7.88 85.66 0.67 4.63 16 13 Cl 0.01 0.40 28.00 -2.72 -0.08 0.32 16 14 C -0.07 -1.96 1.79 -10.77 -0.02 -1.98 16 15 C -0.12 -4.10 5.22 30.67 0.16 -3.94 16 16 C 0.18 8.11 5.31 86.36 0.46 8.57 16 17 N -0.61 -29.95 2.99 -699.09 -2.09 -32.04 16 18 C -0.26 -14.26 9.59 84.04 0.81 -13.45 16 19 H 0.06 3.30 7.89 -2.91 -0.02 3.28 16 20 C -0.05 -2.74 4.91 84.86 0.42 -2.32 16 21 N -0.93 -53.94 11.19 21.65 0.24 -53.70 16 22 Si 0.96 44.95 29.59 68.60 2.03 46.98 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 C 0.14 5.51 6.52 86.36 0.56 6.07 16 27 C -0.12 -3.54 5.04 30.67 0.15 -3.39 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.52 6.40 -2.39 -0.02 1.50 16 31 H 0.41 6.07 7.31 -92.71 -0.68 5.39 16 32 H 0.24 0.61 7.46 -2.91 -0.02 0.59 16 33 H 0.10 0.04 8.14 -2.39 -0.02 0.03 16 34 H 0.13 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 2.07 7.41 -2.39 -0.02 2.06 16 39 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.05 2.49 6.04 -2.39 -0.01 2.48 16 41 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 42 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 44 H 0.09 2.15 6.36 -2.39 -0.02 2.14 16 45 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -78.12 377.27 3.27 -74.85 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 0.33 Total: 5.37 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 6.91 Total: 9.53 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -5.87 Total: -116.95 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.06 Total: -20.10 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.08 Total: 0.32 kcal Total: -78.12 3.27 -74.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997387438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.655 kcal (2) G-P(sol) polarization free energy of solvation -78.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds