Wall clock time and date at job start Sat Apr 11 2020 06:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47432 * 2 1 4 4 N 1.46504 * 109.46757 * 240.00103 * 2 1 3 5 5 C 1.34779 * 119.99846 * 85.00168 * 4 2 1 6 6 O 1.21641 * 120.00033 * 4.38269 * 5 4 2 7 7 C 1.47034 * 119.99730 * 184.38702 * 5 4 2 8 8 C 1.38540 * 126.90685 * 93.46348 * 7 5 4 9 9 Cl 1.73598 * 127.33411 * 359.73180 * 8 7 5 10 10 C 1.39803 * 105.32590 * 179.73288 * 8 7 5 11 11 N 1.30836 * 107.87952 * 0.02562 * 10 8 7 12 12 N 1.28440 * 110.98135 * 359.97438 * 11 10 8 13 13 C 1.46495 * 125.18874 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47426 * 120.00504 * 2 1 3 15 15 C 1.53041 * 109.46180 * 60.02008 * 14 2 1 16 16 C 1.53189 * 109.31261 * 178.60038 * 15 14 2 17 17 N 1.46930 * 108.76543 * 54.66171 * 16 15 14 18 18 C 1.36935 * 120.63309 * 126.39965 * 17 16 15 19 19 H 1.08001 * 120.00093 * 321.07126 * 18 17 16 20 20 C 1.38814 * 119.99814 * 141.07110 * 18 17 16 21 21 N 1.31621 * 120.00189 * 354.58399 * 20 18 17 22 22 Si 1.86796 * 120.00025 * 174.58721 * 20 18 17 23 23 H 1.48498 * 109.47578 * 89.99683 * 22 20 18 24 24 H 1.48502 * 109.47076 * 210.00043 * 22 20 18 25 25 H 1.48501 * 109.47068 * 329.99716 * 22 20 18 26 26 C 1.46934 * 118.73459 * 306.38128 * 17 16 15 27 27 C 1.53045 * 109.45751 * 299.97125 * 14 2 1 28 28 H 1.09003 * 109.46375 * 299.99765 * 1 2 3 29 29 H 1.08994 * 109.47091 * 59.99647 * 1 2 3 30 30 H 1.08997 * 109.46946 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99826 * 264.99537 * 4 2 1 32 32 H 1.07997 * 126.06249 * 179.97438 * 10 8 7 33 33 H 1.08995 * 109.47554 * 274.66639 * 13 12 11 34 34 H 1.09000 * 109.47040 * 34.66598 * 13 12 11 35 35 H 1.09001 * 109.46858 * 154.66470 * 13 12 11 36 36 H 1.09001 * 109.46240 * 179.97438 * 14 2 1 37 37 H 1.08994 * 109.50324 * 298.57042 * 15 14 2 38 38 H 1.09003 * 109.49457 * 58.66696 * 15 14 2 39 39 H 1.09001 * 109.60336 * 294.87262 * 16 15 14 40 40 H 1.09004 * 109.70221 * 174.50870 * 16 15 14 41 41 H 0.96998 * 120.00454 * 180.02562 * 21 20 18 42 42 H 1.08994 * 109.58663 * 293.82170 * 26 17 16 43 43 H 1.09002 * 109.69644 * 173.46256 * 26 17 16 44 44 H 1.09007 * 109.49436 * 301.33495 * 27 14 2 45 45 H 1.08997 * 109.50039 * 61.43254 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.9343 1.1789 -2.3935 7 6 2.5443 -0.7318 -3.5799 8 6 1.7026 -1.2740 -4.5374 9 17 -0.0333 -1.2597 -4.5429 10 6 2.5490 -1.8352 -5.4982 11 7 3.7832 -1.6285 -5.1162 12 7 3.8190 -0.9885 -4.0032 13 6 5.0393 -0.5937 -3.2953 14 6 2.0401 -0.7213 1.2491 15 6 1.5303 -2.1643 1.2486 16 6 2.0715 -2.8934 2.4824 17 7 1.7087 -2.1261 3.6817 18 6 1.0456 -2.7252 4.7192 19 1 0.2700 -3.4494 4.5181 20 6 1.3702 -2.4018 6.0296 21 7 2.3851 -1.6013 6.2777 22 14 0.3668 -3.1027 7.4407 23 1 0.9580 -4.3938 7.8751 24 1 0.3758 -2.1468 8.5771 25 1 -1.0312 -3.3246 6.9916 26 6 2.0714 -0.7037 3.7468 27 6 1.5304 0.0007 2.4986 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 2.2490 -1.6318 -1.1527 32 1 2.2391 -2.3490 -6.3962 33 1 5.3792 -1.4185 -2.6692 34 1 5.8147 -0.3438 -4.0195 35 1 4.8320 0.2752 -2.6707 36 1 3.1301 -0.7216 1.2487 37 1 0.4406 -2.1653 1.2740 38 1 1.8740 -2.6712 0.3469 39 1 3.1564 -2.9726 2.4137 40 1 1.6352 -3.8906 2.5408 41 1 2.6122 -1.3755 7.1933 42 1 3.1562 -0.6044 3.7812 43 1 1.6347 -0.2537 4.6385 44 1 1.8743 1.0350 2.4868 45 1 0.4407 -0.0208 2.5122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997585597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:48 Heat of formation + Delta-G solvation = 32.723821 kcal Electronic energy + Delta-G solvation = -27855.081784 eV Core-core repulsion = 23934.874263 eV Total energy + Delta-G solvation = -3920.207521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.71243 -41.07581 -39.44916 -37.67527 -36.84464 -34.60556 -34.39371 -33.05795 -31.89728 -31.35672 -30.19402 -28.16050 -27.15032 -25.54187 -24.29091 -23.69121 -22.87976 -22.06013 -21.22089 -20.20845 -19.37048 -18.51581 -17.75131 -17.29973 -16.99167 -16.70725 -16.39883 -15.75963 -15.73693 -15.41334 -15.29029 -15.16633 -14.77128 -14.66929 -14.13016 -14.08964 -14.06174 -13.67566 -13.63709 -13.03559 -12.93722 -12.91663 -12.88798 -12.78938 -12.67337 -12.47384 -12.19687 -11.97111 -11.68316 -11.63852 -11.62926 -11.43057 -11.09842 -10.96513 -10.54134 -10.41959 -10.27485 -9.88088 -8.47835 -7.86021 -5.44748 0.30450 0.67597 1.11118 1.37040 1.46684 1.47694 1.56660 1.62881 2.07260 2.50569 3.30198 3.34505 3.46908 3.71351 3.80500 3.86530 3.93063 4.05335 4.22581 4.25101 4.33817 4.37289 4.42852 4.53013 4.59293 4.62816 4.72959 4.79988 4.93763 4.96172 5.05631 5.08482 5.13959 5.24930 5.29141 5.31696 5.39440 5.46851 5.48950 5.59240 5.68775 5.82784 6.25565 6.47565 6.76393 6.88061 7.20911 7.88329 8.44468 9.18688 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.002548 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.940533 B =10984.532156 C =11277.144925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.157 3.843 3 H 0.083 0.917 4 N -0.691 5.691 5 C 0.598 3.402 6 O -0.552 6.552 7 C -0.026 4.026 8 C -0.126 4.126 9 Cl -0.020 7.020 10 C 0.026 3.974 11 N -0.280 5.280 12 N -0.262 5.262 13 C 0.074 3.926 14 C -0.072 4.072 15 C -0.117 4.117 16 C 0.142 3.858 17 N -0.609 5.609 18 C -0.268 4.268 19 H 0.059 0.941 20 C -0.041 4.041 21 N -0.932 5.932 22 Si 0.964 3.036 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.183 3.817 27 C -0.122 4.122 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.412 0.588 32 H 0.223 0.777 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.012 0.988 40 H 0.050 0.950 41 H 0.250 0.750 42 H -0.005 1.005 43 H 0.041 0.959 44 H 0.066 0.934 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.936 0.575 -22.900 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.053 3.947 3 H 0.101 0.899 4 N -0.343 5.343 5 C 0.381 3.619 6 O -0.428 6.428 7 C -0.157 4.157 8 C -0.164 4.164 9 Cl 0.009 6.991 10 C -0.151 4.151 11 N -0.111 5.111 12 N -0.050 5.050 13 C -0.064 4.064 14 C -0.091 4.091 15 C -0.156 4.156 16 C 0.016 3.984 17 N -0.333 5.333 18 C -0.398 4.398 19 H 0.077 0.923 20 C -0.237 4.237 21 N -0.577 5.577 22 Si 0.792 3.208 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.194 1.194 26 C 0.058 3.942 27 C -0.162 4.162 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.250 0.750 32 H 0.240 0.760 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.030 0.970 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.013 0.987 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.956 1.339 -22.965 23.193 hybrid contribution -1.181 -0.477 1.472 1.946 sum 1.776 0.861 -21.493 21.584 Atomic orbital electron populations 1.22198 0.94624 1.02871 1.02100 1.21006 0.94627 0.96559 0.82521 0.89908 1.46090 1.64974 1.14789 1.08399 1.16910 0.77310 0.85675 0.82035 1.90857 1.51488 1.15148 1.85326 1.21208 0.86932 1.08201 0.99365 1.21441 0.87082 1.09178 0.98725 1.98364 1.04861 1.97611 1.98300 1.24005 0.86185 1.03353 1.01592 1.73268 1.23707 1.13876 1.00241 1.45842 1.05658 1.38141 1.15395 1.22648 0.82402 1.03264 0.98131 1.21154 1.00098 0.95314 0.92567 1.21983 1.01019 0.94878 0.97700 1.21052 0.96033 0.94475 0.86812 1.44167 1.66968 1.05673 1.16527 1.19385 1.12664 1.22009 0.85759 0.92304 1.26084 0.97485 0.99736 1.00392 1.70105 1.29383 1.39193 1.19035 0.85338 0.78880 0.77560 0.79029 1.21063 1.21981 1.19379 1.20470 0.94787 0.83969 0.94993 1.22072 1.00784 0.98516 0.94822 0.90922 0.93164 0.91455 0.74979 0.76027 0.86955 0.86115 0.88560 0.91062 0.91834 0.90347 0.97010 0.93136 0.94089 0.98679 0.94043 0.91550 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 8.78 71.98 0.63 -3.22 16 2 C 0.16 3.74 2.44 44.99 0.11 3.85 16 3 H 0.08 2.16 7.52 -2.39 -0.02 2.14 16 4 N -0.69 -14.43 4.99 -446.17 -2.23 -16.66 16 5 C 0.60 14.42 6.88 86.55 0.60 15.01 16 6 O -0.55 -17.24 16.74 -4.16 -0.07 -17.31 16 7 C -0.03 -0.56 6.72 40.76 0.27 -0.28 16 8 C -0.13 -2.59 6.89 22.72 0.16 -2.43 16 9 Cl -0.02 -0.40 29.24 -2.72 -0.08 -0.48 16 10 C 0.03 0.44 12.04 85.22 1.03 1.47 16 11 N -0.28 -5.27 11.89 -57.07 -0.68 -5.95 16 12 N -0.26 -4.76 3.75 -355.93 -1.34 -6.10 16 13 C 0.07 0.81 11.22 127.77 1.43 2.24 16 14 C -0.07 -1.97 2.14 -10.77 -0.02 -2.00 16 15 C -0.12 -3.29 4.81 30.67 0.15 -3.14 16 16 C 0.14 5.41 6.52 86.36 0.56 5.98 16 17 N -0.61 -29.29 2.95 -699.07 -2.06 -31.36 16 18 C -0.27 -14.38 9.50 84.03 0.80 -13.58 16 19 H 0.06 3.11 7.83 -2.91 -0.02 3.08 16 20 C -0.04 -2.23 5.13 84.86 0.44 -1.79 16 21 N -0.93 -54.30 11.35 21.65 0.25 -54.05 16 22 Si 0.96 44.07 29.56 68.60 2.03 46.09 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 C 0.18 8.42 5.20 86.36 0.45 8.87 16 27 C -0.12 -4.14 4.96 30.67 0.15 -3.99 16 28 H 0.07 1.79 6.46 -2.39 -0.02 1.77 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.57 6.46 -2.39 -0.02 1.55 16 31 H 0.41 7.18 6.83 -92.71 -0.63 6.55 16 32 H 0.22 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.12 0.89 8.14 -2.39 -0.02 0.88 16 35 H 0.10 1.10 7.66 -2.39 -0.02 1.08 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 37 H 0.06 1.87 6.51 -2.39 -0.02 1.86 16 38 H 0.08 1.67 6.46 -2.39 -0.02 1.66 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.05 1.93 7.93 -2.38 -0.02 1.91 16 41 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 42 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.04 2.19 6.55 -2.39 -0.02 2.17 16 44 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 45 H 0.06 2.09 6.51 -2.39 -0.02 2.08 16 Total: -1.00 -69.25 375.10 2.96 -66.29 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.39 Total: 12.55 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 6.75 Total: 6.98 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -6.06 Total: -114.12 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.07 Total: -17.31 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -69.25 2.96 -66.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997585597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.014 kcal (2) G-P(sol) polarization free energy of solvation -69.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds