Wall clock time and date at job start Sat Apr 11 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46953 * 2 1 4 4 N 1.46500 * 109.47141 * 120.00909 * 2 1 3 5 5 C 1.34777 * 119.99455 * 274.99878 * 4 2 1 6 6 O 1.21581 * 120.00499 * 359.97438 * 5 4 2 7 7 C 1.47665 * 119.99930 * 180.02562 * 5 4 2 8 8 N 1.31821 * 126.46126 * 359.68458 * 7 5 4 9 9 N 1.28469 * 110.13836 * 180.26234 * 8 7 5 10 10 C 1.46507 * 124.93599 * 180.02562 * 9 8 7 11 11 C 1.35638 * 110.13030 * 0.02562 * 9 8 7 12 12 C 1.35458 * 107.13208 * 359.97438 * 11 9 8 13 13 Cl 1.73604 * 127.23600 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.46745 * 240.00409 * 2 1 3 15 15 H 1.08998 * 109.49867 * 300.06157 * 14 2 1 16 16 C 1.53038 * 109.49763 * 60.16343 * 14 2 1 17 17 C 1.53045 * 109.53800 * 181.31535 * 16 14 2 18 18 C 1.53197 * 109.31155 * 298.63386 * 17 16 14 19 19 N 1.46931 * 108.77365 * 54.63194 * 18 17 16 20 20 C 1.36932 * 120.62445 * 126.37367 * 19 18 17 21 21 H 1.08002 * 120.00253 * 331.84426 * 20 19 18 22 22 C 1.38817 * 120.00120 * 151.84873 * 20 19 18 23 23 N 1.31620 * 119.99828 * 343.06609 * 22 20 19 24 24 Si 1.86799 * 120.00221 * 163.06357 * 22 20 19 25 25 H 1.48499 * 109.46897 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46826 * 120.00012 * 24 22 20 27 27 H 1.48496 * 109.46914 * 239.99918 * 24 22 20 28 28 C 1.46918 * 118.74307 * 306.39206 * 19 18 17 29 29 H 1.09002 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46876 * 299.99470 * 1 2 3 31 31 H 1.09000 * 109.47606 * 59.99516 * 1 2 3 32 32 H 0.96992 * 120.00511 * 94.99888 * 4 2 1 33 33 H 1.09001 * 109.47041 * 269.97898 * 10 9 8 34 34 H 1.09002 * 109.46887 * 29.98023 * 10 9 8 35 35 H 1.08996 * 109.47229 * 149.97920 * 10 9 8 36 36 H 1.08007 * 126.43430 * 180.02562 * 11 9 8 37 37 H 1.08994 * 109.46082 * 301.33493 * 16 14 2 38 38 H 1.08998 * 109.46174 * 61.29727 * 16 14 2 39 39 H 1.08994 * 109.49652 * 178.68308 * 17 16 14 40 40 H 1.08997 * 109.52254 * 58.59590 * 17 16 14 41 41 H 1.09006 * 109.58700 * 294.84932 * 18 17 16 42 42 H 1.08993 * 109.70584 * 174.49398 * 18 17 16 43 43 H 0.96991 * 120.00469 * 180.02562 * 23 22 20 44 44 H 1.09005 * 109.58856 * 293.82716 * 28 19 18 45 45 H 1.08998 * 109.58740 * 173.39300 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 2.1470 -0.0185 2.3571 6 8 1.8583 1.1613 2.4117 7 6 2.6398 -0.7146 3.5626 8 7 2.9831 -1.9844 3.6487 9 7 3.3614 -2.2602 4.8450 10 6 3.8124 -3.5779 5.2996 11 6 3.2826 -1.1541 5.6261 12 6 2.8264 -0.1457 4.8452 13 17 2.5316 1.4984 5.3183 14 6 2.0399 -0.7212 -1.2493 15 1 1.6759 -1.7486 -1.2504 16 6 1.5334 0.0023 -2.4992 17 6 2.0157 -0.7372 -3.7494 18 6 3.5474 -0.7378 -3.7783 19 7 4.0441 -1.3003 -2.5151 20 6 4.9299 -2.3445 -2.5171 21 1 4.9347 -3.0471 -3.3372 22 6 5.8219 -2.5000 -1.4648 23 7 6.0563 -1.4957 -0.6470 24 14 6.6894 -4.1345 -1.2094 25 1 6.2563 -5.0937 -2.2571 26 1 8.1581 -3.9346 -1.2986 27 1 6.3437 -4.6743 0.1301 28 6 3.5719 -0.7216 -1.2500 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.2490 -1.6319 1.1524 33 1 2.9578 -4.1493 5.6619 34 1 4.2789 -4.1085 4.4695 35 1 4.5361 -3.4561 6.1055 36 1 3.5368 -1.0893 6.6739 37 1 0.4438 0.0255 -2.4888 38 1 1.9181 1.0220 -2.5095 39 1 1.6352 -0.2348 -4.6386 40 1 1.6519 -1.7645 -3.7280 41 1 3.9111 0.2836 -3.8915 42 1 3.8990 -1.3453 -4.6122 43 1 6.6798 -1.6041 0.0881 44 1 3.9375 0.3011 -1.1570 45 1 3.9375 -1.3199 -0.4155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025423780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:20 Heat of formation + Delta-G solvation = 54.685926 kcal Electronic energy + Delta-G solvation = -28317.633030 eV Core-core repulsion = 24398.377858 eV Total energy + Delta-G solvation = -3919.255172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.72401 -39.37400 -37.69689 -36.44883 -34.98754 -33.54711 -32.97712 -31.32082 -30.57315 -29.75114 -28.66827 -27.51420 -25.18738 -23.91595 -22.51040 -21.92634 -21.64574 -20.31981 -19.89854 -19.01095 -17.85173 -16.72374 -16.50052 -16.47175 -15.59598 -14.95743 -14.69215 -14.49172 -14.16500 -13.94807 -13.68843 -13.45748 -13.28302 -13.12184 -13.03592 -12.98661 -12.56834 -12.38656 -12.07925 -11.86270 -11.83620 -11.54320 -11.31823 -10.99337 -10.87591 -10.66729 -10.58735 -10.38286 -10.18033 -10.01615 -9.86572 -9.73577 -9.48369 -9.38989 -9.33721 -8.84524 -8.56728 -8.42984 -6.61766 -5.74968 -3.17794 1.56440 1.83952 1.88744 2.65263 3.34922 3.43081 3.45830 3.48669 3.65929 4.28864 4.50287 4.52777 4.79631 4.84969 5.09561 5.13575 5.16625 5.34360 5.38594 5.55707 5.60741 5.63627 5.68985 5.83979 5.89326 5.95849 6.15394 6.23019 6.27215 6.38007 6.47317 6.50598 6.53070 6.55884 6.72991 6.83719 6.94423 6.95678 7.07365 7.41759 7.63485 7.72798 7.82740 7.99200 8.48283 8.58008 9.24602 9.88599 10.46268 11.32340 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009770 B = 0.004363 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.348344 B = 6415.463905 C = 8454.977458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 H 0.086 0.914 4 N -0.699 5.699 5 C 0.602 3.398 6 O -0.526 6.526 7 C 0.005 3.995 8 N -0.239 5.239 9 N -0.281 5.281 10 C 0.088 3.912 11 C -0.008 4.008 12 C -0.102 4.102 13 Cl -0.012 7.012 14 C -0.120 4.120 15 H 0.067 0.933 16 C -0.101 4.101 17 C -0.133 4.133 18 C 0.143 3.857 19 N -0.592 5.592 20 C -0.252 4.252 21 H 0.065 0.935 22 C 0.004 3.996 23 N -0.897 5.897 24 Si 0.898 3.102 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.180 3.820 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.407 0.593 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.190 0.810 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.051 0.949 43 H 0.252 0.748 44 H 0.016 0.984 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.840 -1.746 12.491 15.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 H 0.104 0.896 4 N -0.349 5.349 5 C 0.385 3.615 6 O -0.401 6.401 7 C -0.157 4.157 8 N -0.075 5.075 9 N -0.069 5.069 10 C -0.052 4.052 11 C -0.151 4.151 12 C -0.140 4.140 13 Cl 0.016 6.984 14 C -0.141 4.141 15 H 0.086 0.914 16 C -0.139 4.139 17 C -0.172 4.172 18 C 0.017 3.983 19 N -0.315 5.315 20 C -0.382 4.382 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.541 5.541 24 Si 0.728 3.272 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.054 3.946 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.242 0.758 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.207 0.793 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.034 0.966 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.806 -1.867 12.085 15.069 hybrid contribution 0.710 -0.545 0.854 1.237 sum -8.096 -2.412 12.939 15.453 Atomic orbital electron populations 1.22216 0.95955 1.01731 1.02020 1.21018 0.93050 0.97601 0.83668 0.89560 1.45855 1.65691 1.14542 1.08839 1.16705 0.77682 0.85713 0.81378 1.90800 1.50519 1.14379 1.84357 1.21997 1.08011 0.90315 0.95342 1.73709 1.14799 1.16236 1.02746 1.45354 1.45859 1.10090 1.05630 1.22254 1.01395 0.79242 1.02313 1.22574 1.07458 0.86011 0.99083 1.20804 1.10495 0.89123 0.93569 1.98352 1.94641 1.14202 1.91173 1.22150 1.01351 0.98660 0.91945 0.91423 1.21437 0.98791 0.99030 0.94691 1.21992 0.99075 0.99819 0.96318 1.20927 0.91058 0.96322 0.90029 1.44044 1.49954 1.37970 0.99498 1.19206 1.10262 1.01606 1.07096 0.91769 1.25031 0.97129 0.97217 1.00147 1.70051 1.36687 1.28688 1.18655 0.86291 0.79169 0.84115 0.77645 1.20283 1.21837 1.21710 1.20780 0.86275 0.97237 0.90306 0.92807 0.92605 0.91458 0.75769 0.89442 0.87930 0.88398 0.79309 0.93081 0.92562 0.93183 0.92496 0.96601 0.93034 0.93830 0.96550 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.14 37.16 0.34 -1.99 16 2 C 0.15 2.60 2.16 -67.93 -0.15 2.46 16 3 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 4 N -0.70 -12.42 4.47 -54.81 -0.25 -12.67 16 5 C 0.60 11.26 7.79 -12.41 -0.10 11.16 16 6 O -0.53 -10.78 15.54 5.29 0.08 -10.70 16 7 C 0.00 0.08 7.13 -82.76 -0.59 -0.51 16 8 N -0.24 -3.73 11.66 33.42 0.39 -3.34 16 9 N -0.28 -3.29 3.72 -67.94 -0.25 -3.54 16 10 C 0.09 0.58 11.32 59.85 0.68 1.26 16 11 C -0.01 -0.08 11.49 -16.86 -0.19 -0.28 16 12 C -0.10 -1.51 6.80 -39.31 -0.27 -1.78 16 13 Cl -0.01 -0.18 28.17 -51.86 -1.46 -1.64 16 14 C -0.12 -2.23 1.97 -90.50 -0.18 -2.41 16 15 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 16 C -0.10 -1.69 4.86 -26.69 -0.13 -1.82 16 17 C -0.13 -2.30 6.08 -26.61 -0.16 -2.47 16 18 C 0.14 3.04 6.52 -3.71 -0.02 3.01 16 19 N -0.59 -14.86 2.99 -172.31 -0.52 -15.38 16 20 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 21 H 0.06 1.74 7.89 -52.49 -0.41 1.32 16 22 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 23 N -0.90 -26.04 11.20 55.49 0.62 -25.42 16 24 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 C 0.18 4.26 4.34 -3.71 -0.02 4.25 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.88 6.41 -51.93 -0.33 0.54 16 32 H 0.41 7.19 8.14 -40.82 -0.33 6.86 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.36 8.13 -51.93 -0.42 -0.07 16 36 H 0.19 1.26 8.06 -52.48 -0.42 0.83 16 37 H 0.05 0.73 6.36 -51.93 -0.33 0.40 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 2.35 5.56 -51.93 -0.29 2.06 16 LS Contribution 378.53 15.07 5.70 5.70 Total: -1.00 -33.59 378.53 -8.43 -42.03 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.71 Total: 4.64 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.02 Total: 3.85 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.00 Total: -60.35 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.46 Total: -1.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.59 -8.43 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025423780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.715 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds