Wall clock time and date at job start Sat Apr 11 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.49170 * 2 1 4 4 C 1.53190 * 109.52501 * 120.08092 * 2 1 3 5 5 N 1.46924 * 108.77634 * 174.60449 * 4 2 1 6 6 C 1.34770 * 120.63061 * 126.41489 * 5 4 2 7 7 O 1.21479 * 120.00081 * 352.56051 * 6 5 4 8 8 C 1.48463 * 120.00059 * 172.56102 * 6 5 4 9 9 C 1.39535 * 120.55092 * 171.13461 * 8 6 5 10 10 C 1.38760 * 118.26299 * 179.97438 * 9 8 6 11 11 C 1.50697 * 120.42388 * 180.02562 * 10 9 8 12 12 F 1.39897 * 109.47089 * 299.99543 * 11 10 9 13 13 F 1.39898 * 109.47484 * 59.99703 * 11 10 9 14 14 N 1.32203 * 119.14583 * 359.97438 * 10 9 8 15 15 C 1.31884 * 121.03928 * 0.02562 * 14 10 9 16 16 N 1.31583 * 121.91421 * 359.73104 * 15 14 10 17 17 C 1.46927 * 118.73762 * 306.39333 * 5 4 2 18 18 C 1.53196 * 108.77650 * 53.60668 * 17 5 4 19 19 C 1.53039 * 109.31279 * 305.36443 * 18 17 5 20 20 H 1.08997 * 109.46417 * 301.34413 * 19 18 17 21 21 N 1.46500 * 109.45749 * 181.38384 * 19 18 17 22 22 C 1.36935 * 119.99979 * 85.00515 * 21 19 18 23 23 H 1.08000 * 119.99679 * 359.97438 * 22 21 19 24 24 C 1.38805 * 120.00019 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00440 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99760 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47227 * 0.02562 * 26 24 22 28 28 H 1.48510 * 109.47074 * 120.00299 * 26 24 22 29 29 H 1.48500 * 109.46991 * 239.99717 * 26 24 22 30 30 H 1.09000 * 109.46873 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47237 * 300.06614 * 1 2 3 32 32 H 1.09010 * 109.47369 * 60.06650 * 1 2 3 33 33 H 1.09001 * 109.58537 * 294.39367 * 4 2 1 34 34 H 1.09005 * 109.58295 * 54.81470 * 4 2 1 35 35 H 1.08006 * 120.86690 * 359.97438 * 9 8 6 36 36 H 1.09002 * 109.46806 * 179.97438 * 11 10 9 37 37 H 1.07998 * 119.03929 * 180.02562 * 15 14 10 38 38 H 1.09000 * 109.58723 * 293.81947 * 17 5 4 39 39 H 1.08998 * 109.58680 * 173.39337 * 17 5 4 40 40 H 1.08999 * 109.49549 * 185.41188 * 18 17 5 41 41 H 1.08998 * 109.49569 * 65.31676 * 18 17 5 42 42 H 0.96998 * 119.99970 * 264.99952 * 21 19 18 43 43 H 0.97000 * 120.00530 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0420 -0.7237 1.2494 5 7 3.5053 -0.8283 1.1690 6 6 4.2818 -0.3853 2.1775 7 8 3.7858 0.2266 3.1023 8 6 5.7434 -0.6452 2.1583 9 6 6.5838 -0.0396 3.0932 10 6 7.9421 -0.3164 3.0320 11 6 8.8938 0.3106 4.0180 12 9 8.8329 1.7035 3.9038 13 9 8.5356 -0.0669 5.3166 14 7 8.3905 -1.1380 2.0983 15 6 7.5683 -1.6937 1.2297 16 7 6.2729 -1.4640 1.2528 17 6 4.1059 -1.4254 -0.0316 18 6 3.5708 -0.6938 -1.2667 19 6 2.0408 -0.7227 -1.2486 20 1 1.6972 -1.7570 -1.2356 21 7 1.5259 -0.0526 -2.4453 22 6 1.3945 -0.7492 -3.6170 23 1 1.6708 -1.7924 -3.6588 24 6 0.9061 -0.1145 -4.7507 25 7 0.5689 1.1567 -4.6996 26 14 0.7275 -1.0646 -6.3491 27 1 1.1711 -2.4668 -6.1437 28 1 -0.6950 -1.0532 -6.7754 29 1 1.5638 -0.4290 -7.3988 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3634 0.5128 -0.8906 33 1 1.7644 -0.1580 2.1388 34 1 1.6064 -1.7217 1.2978 35 1 6.1874 0.6271 3.8447 36 1 9.9087 -0.0275 3.8086 37 1 7.9694 -2.3603 0.4806 38 1 3.8387 -2.4806 -0.0877 39 1 5.1902 -1.3227 0.0126 40 1 3.9334 -1.1882 -2.1679 41 1 3.9154 0.3402 -1.2547 42 1 1.2780 0.8844 -2.4078 43 1 0.2280 1.6004 -5.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036076113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:45 Heat of formation + Delta-G solvation = -53.251953 kcal Electronic energy + Delta-G solvation = -29605.623815 eV Core-core repulsion = 25129.891425 eV Total energy + Delta-G solvation = -4475.732390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.60302 -47.58860 -41.90756 -39.94447 -37.79074 -35.29778 -34.40545 -33.04140 -32.67106 -31.49202 -29.38542 -28.25647 -27.11516 -25.46721 -24.69010 -23.94147 -22.67684 -21.70030 -20.69070 -19.49828 -18.95612 -18.08988 -17.85472 -17.44099 -17.09282 -16.48274 -16.13997 -15.92793 -15.81507 -15.42014 -14.94383 -14.77161 -14.41647 -14.16393 -13.93606 -13.80906 -13.75734 -13.48645 -13.31809 -13.09441 -12.49244 -12.42742 -12.08228 -11.96299 -11.67729 -11.50703 -11.24758 -11.16704 -10.95511 -10.84270 -10.64877 -10.60197 -10.43759 -10.35303 -10.18324 -9.80361 -9.65782 -9.37143 -8.85897 -8.58834 -6.97244 -5.79463 -3.08031 -0.11936 0.12710 2.36529 2.50420 2.67012 3.19460 3.39521 3.40761 3.46176 3.48441 3.53478 3.64158 3.99527 4.26166 4.36880 4.36905 4.55710 4.72922 4.95348 5.12075 5.19651 5.31002 5.39750 5.47706 5.56882 5.66326 5.74661 5.82102 6.01539 6.03372 6.10377 6.23842 6.33099 6.38649 6.41730 6.49959 6.61866 6.80795 6.89045 7.04493 7.20562 7.33667 7.67337 7.87936 8.38743 9.50226 10.07804 10.42642 11.43129 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.002535 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.372593 B =11041.897122 C =11794.807663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.116 3.884 5 N -0.575 5.575 6 C 0.563 3.437 7 O -0.530 6.530 8 C 0.149 3.851 9 C -0.133 4.133 10 C 0.099 3.901 11 C 0.328 3.672 12 F -0.186 7.186 13 F -0.187 7.187 14 N -0.482 5.482 15 C 0.296 3.704 16 N -0.466 5.466 17 C 0.073 3.927 18 C -0.152 4.152 19 C 0.182 3.818 20 H 0.048 0.952 21 N -0.721 5.721 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.168 0.832 36 H 0.141 0.859 37 H 0.215 0.785 38 H 0.067 0.933 39 H 0.135 0.865 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.383 0.617 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.921 -5.215 17.385 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.006 4.006 5 N -0.305 5.305 6 C 0.348 3.652 7 O -0.406 6.406 8 C 0.000 4.000 9 C -0.156 4.156 10 C -0.050 4.050 11 C 0.273 3.727 12 F -0.167 7.167 13 F -0.168 7.168 14 N -0.197 5.197 15 C 0.009 3.991 16 N -0.182 5.182 17 C -0.050 4.050 18 C -0.193 4.193 19 C 0.072 3.928 20 H 0.066 0.934 21 N -0.361 5.361 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.220 1.220 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.185 0.815 36 H 0.158 0.842 37 H 0.231 0.769 38 H 0.085 0.915 39 H 0.151 0.849 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.217 0.783 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.934 -5.615 17.060 24.010 hybrid contribution -0.556 0.403 -0.534 0.870 sum 15.378 -5.212 16.526 23.168 Atomic orbital electron populations 1.21661 0.93943 1.01821 1.01948 1.21743 0.96696 1.00055 0.94470 0.91188 1.21881 0.77625 1.01259 0.99802 1.48076 1.07190 1.57655 1.17582 1.17682 0.84063 0.80183 0.83304 1.90799 1.73330 1.40574 1.35936 1.21863 0.95824 0.91829 0.90452 1.22736 0.93476 0.99585 0.99812 1.22067 0.92817 0.94915 0.95185 1.20096 0.99001 0.76145 0.77414 1.93077 1.97626 1.30185 1.95799 1.93070 1.93892 1.90960 1.38858 1.67961 1.41012 1.07389 1.03289 1.25329 0.84936 0.94293 0.94531 1.68634 1.14697 1.14513 1.20363 1.23069 1.02153 0.96844 0.82910 1.22702 1.00047 1.00244 0.96292 1.20234 0.90621 0.95632 0.86311 0.93390 1.42419 1.76525 1.11390 1.05802 1.19255 1.35663 0.94111 0.87699 0.91179 1.24730 1.02134 0.96029 0.98064 1.69666 1.50087 1.09510 1.28796 0.86157 0.77314 0.78870 0.84079 1.20579 1.21931 1.21958 0.92999 0.93766 0.90652 0.89169 0.90958 0.81490 0.84200 0.76889 0.91502 0.84905 0.90512 0.92628 0.78261 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.03 37.16 0.34 -1.83 16 2 C -0.11 -1.78 2.46 -90.50 -0.22 -2.01 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.12 1.65 5.73 -3.71 -0.02 1.63 16 5 N -0.58 -8.13 2.97 -173.65 -0.52 -8.64 16 6 C 0.56 8.08 7.67 -12.05 -0.09 7.99 16 7 O -0.53 -8.73 15.89 5.38 0.09 -8.65 16 8 C 0.15 1.77 6.61 -82.63 -0.55 1.23 16 9 C -0.13 -1.41 9.32 -38.90 -0.36 -1.77 16 10 C 0.10 0.89 6.31 -82.24 -0.52 0.37 16 11 C 0.33 2.31 5.58 36.00 0.20 2.51 16 12 F -0.19 -1.60 17.27 2.25 0.04 -1.57 16 13 F -0.19 -1.56 17.27 2.25 0.04 -1.52 16 14 N -0.48 -4.15 10.35 -10.81 -0.11 -4.26 16 15 C 0.30 2.40 12.28 -92.26 -1.13 1.26 16 16 N -0.47 -4.85 6.30 -11.14 -0.07 -4.92 16 17 C 0.07 0.98 5.92 -3.71 -0.02 0.96 16 18 C -0.15 -2.54 5.66 -26.61 -0.15 -2.70 16 19 C 0.18 3.41 2.19 -67.89 -0.15 3.26 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 N -0.72 -17.15 4.41 -53.39 -0.24 -17.39 16 22 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 26 Si 0.90 21.90 29.55 -169.99 -5.02 16.88 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.42 7.36 -51.92 -0.38 1.04 16 33 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.17 1.70 7.76 -52.48 -0.41 1.30 16 36 H 0.14 0.55 8.12 -51.93 -0.42 0.13 16 37 H 0.21 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.13 1.65 4.01 -81.94 -0.33 1.32 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.38 9.89 7.50 -40.82 -0.31 9.58 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -31.51 363.59 -8.07 -39.59 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.56 Total: 7.83 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -2.93 Total: 4.01 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.21 Total: -62.05 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.08 Total: -3.08 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.51 -8.07 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036076113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.666 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds