Wall clock time and date at job start Sat Apr 11 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52389 * 2 1 4 4 C 1.53191 * 109.49475 * 120.07925 * 2 1 3 5 5 N 1.46928 * 108.77343 * 174.58721 * 4 2 1 6 6 C 1.34783 * 120.62874 * 126.37163 * 5 4 2 7 7 O 1.21284 * 119.99853 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00028 * 180.02562 * 6 5 4 9 9 C 1.50693 * 109.47185 * 179.97438 * 8 6 5 10 10 C 1.35312 * 126.04698 * 99.99679 * 9 8 6 11 11 N 1.34947 * 107.76521 * 179.97438 * 10 9 8 12 12 C 1.46504 * 126.02363 * 180.02562 * 11 10 9 13 13 N 1.40083 * 107.94748 * 0.02562 * 11 10 9 14 14 C 1.30893 * 108.20320 * 359.73617 * 13 11 10 15 15 Cl 1.73604 * 125.91153 * 180.24172 * 14 13 11 16 16 C 1.46919 * 118.73982 * 306.39079 * 5 4 2 17 17 C 1.53195 * 108.89273 * 53.53793 * 16 5 4 18 18 C 1.53039 * 109.49929 * 239.91849 * 2 1 3 19 19 H 1.09007 * 109.45640 * 298.70737 * 18 2 1 20 20 N 1.46499 * 109.46160 * 58.66119 * 18 2 1 21 21 C 1.36928 * 120.00250 * 205.00378 * 20 18 2 22 22 H 1.08000 * 120.00193 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00515 * 180.02562 * 21 20 18 24 24 N 1.31626 * 119.99431 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00596 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46788 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47413 * 119.99496 * 25 23 21 28 28 H 1.48498 * 109.46785 * 239.99788 * 25 23 21 29 29 H 1.08996 * 109.47522 * 299.92308 * 1 2 3 30 30 H 1.09006 * 109.47027 * 59.92218 * 1 2 3 31 31 H 1.08998 * 109.46892 * 179.91700 * 1 2 3 32 32 H 1.08998 * 109.58966 * 54.79787 * 4 2 1 33 33 H 1.08999 * 109.58758 * 294.37144 * 4 2 1 34 34 H 1.09005 * 109.46926 * 300.00024 * 8 6 5 35 35 H 1.09006 * 109.47172 * 59.99213 * 8 6 5 36 36 H 1.08000 * 126.11719 * 0.02562 * 10 9 8 37 37 H 1.08997 * 109.46831 * 90.00310 * 12 11 10 38 38 H 1.08998 * 109.46840 * 210.00877 * 12 11 10 39 39 H 1.08996 * 109.46727 * 330.00411 * 12 11 10 40 40 H 1.09002 * 109.58751 * 173.39743 * 16 5 4 41 41 H 1.08996 * 109.58750 * 293.67928 * 16 5 4 42 42 H 1.08997 * 109.50046 * 65.38734 * 17 16 5 43 43 H 1.09003 * 109.49733 * 185.48713 * 17 16 5 44 44 H 0.97007 * 119.99658 * 24.99911 * 20 18 2 45 45 H 0.97006 * 119.99397 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2811 -0.3855 2.1781 7 8 3.7730 0.1057 3.1637 8 6 5.7806 -0.5001 2.0809 9 6 6.4094 0.0645 3.3285 10 6 6.8698 -0.6498 4.3815 11 7 7.3554 0.2221 5.2898 12 6 7.9527 -0.1234 6.5822 13 7 7.1878 1.5157 4.7790 14 6 6.6254 1.4204 3.6009 15 17 6.2148 2.7464 2.5584 16 6 4.1053 -1.4267 -0.0306 17 6 3.5713 -0.6980 -1.2679 18 6 2.0409 -0.7231 -1.2483 19 1 1.6967 -1.7573 -1.2352 20 7 1.5266 -0.0530 -2.4453 21 6 1.3965 -0.7493 -3.6171 22 1 1.6734 -1.7923 -3.6592 23 6 0.9097 -0.1143 -4.7515 24 7 0.5727 1.1571 -4.7004 25 14 0.7328 -1.0639 -6.3503 26 1 1.1770 -2.4660 -6.1449 27 1 -0.6891 -1.0523 -6.7783 28 1 1.5706 -0.4282 -7.3988 29 1 -0.3634 0.5126 0.8906 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6052 -1.7215 1.2981 33 1 1.7638 -0.1579 2.1389 34 1 6.0588 -1.5488 1.9759 35 1 6.1321 0.0577 1.2128 36 1 6.8525 -1.7254 4.4774 37 1 9.0267 -0.2637 6.4601 38 1 7.7699 0.6818 7.2937 39 1 7.5057 -1.0453 6.9540 40 1 5.1896 -1.3246 0.0139 41 1 3.8397 -2.4824 -0.0852 42 1 3.9164 0.3358 -1.2585 43 1 3.9340 -1.1951 -2.1676 44 1 1.2782 0.8839 -2.4076 45 1 0.2322 1.6007 -5.4930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036183039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:57 Heat of formation + Delta-G solvation = 49.205261 kcal Electronic energy + Delta-G solvation = -27490.609068 eV Core-core repulsion = 23571.116237 eV Total energy + Delta-G solvation = -3919.492832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59938 -39.91353 -37.58317 -36.81571 -34.54919 -33.84076 -32.90588 -31.96113 -31.40553 -29.33343 -28.74504 -26.73857 -25.59649 -24.66595 -22.76204 -21.64053 -21.53198 -21.01837 -19.76004 -18.80395 -17.23624 -17.09008 -16.96620 -15.89049 -15.58110 -15.37151 -15.12687 -14.90404 -14.10334 -14.00913 -13.79774 -13.67970 -13.63254 -13.28227 -13.22596 -13.07266 -12.67565 -12.45691 -12.23176 -11.95717 -11.79263 -11.65532 -11.62652 -11.52679 -11.13741 -10.94060 -10.79185 -10.67277 -10.59701 -10.36923 -10.15903 -9.75409 -9.67206 -9.59562 -9.46137 -8.90283 -8.66399 -8.38462 -6.95336 -5.77112 -3.05551 1.34659 1.48930 2.26138 2.63810 2.80370 3.26423 3.42073 3.47530 3.50050 4.17987 4.45516 4.57806 4.69360 4.73802 4.82966 4.92585 4.99921 5.11979 5.29589 5.30842 5.34453 5.37944 5.41219 5.54829 5.64725 5.69062 5.72232 5.83537 5.95608 6.01844 6.12456 6.18887 6.33644 6.42940 6.46898 6.57146 6.60353 6.69326 6.84344 6.95941 7.08862 7.19924 7.61290 7.69311 8.36815 8.41187 9.52584 10.10793 10.45476 11.45444 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021018 B = 0.002464 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.861726 B =11359.217790 C =11566.905394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.608 5.608 6 C 0.515 3.485 7 O -0.539 6.539 8 C -0.064 4.064 9 C -0.201 4.201 10 C 0.076 3.924 11 N -0.365 5.365 12 C 0.104 3.896 13 N -0.284 5.284 14 C 0.142 3.858 15 Cl 0.010 6.990 16 C 0.107 3.893 17 C -0.153 4.153 18 C 0.184 3.816 19 H 0.047 0.953 20 N -0.721 5.721 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.931 5.931 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.182 0.818 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.894 -6.357 20.420 26.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.342 5.342 6 C 0.303 3.697 7 O -0.416 6.416 8 C -0.105 4.105 9 C -0.213 4.213 10 C -0.070 4.070 11 N -0.149 5.149 12 C -0.037 4.037 13 N -0.109 5.109 14 C -0.050 4.050 15 Cl 0.038 6.962 16 C -0.017 4.017 17 C -0.194 4.194 18 C 0.074 3.926 19 H 0.065 0.935 20 N -0.361 5.361 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.199 0.801 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.218 0.782 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.095 -5.360 21.735 27.000 hybrid contribution -0.481 -0.589 -1.763 1.920 sum 14.614 -5.949 19.972 25.452 Atomic orbital electron populations 1.21657 0.94244 1.01682 1.01789 1.21734 0.96473 1.00095 0.94669 0.91269 1.21664 0.78667 1.00561 0.99238 1.48163 1.07071 1.60745 1.18172 1.20503 0.88975 0.77663 0.82558 1.90678 1.75349 1.44335 1.31247 1.19972 0.91904 1.02774 0.95823 1.19242 1.11729 0.90809 0.99528 1.22266 0.98391 0.97175 0.89194 1.48163 1.47611 1.03149 1.15938 1.21927 0.98518 1.02573 0.80698 1.77349 1.23395 0.99958 1.10222 1.22505 1.00202 0.89794 0.92460 1.98412 1.91520 1.44764 1.61494 1.21863 0.97603 0.97309 0.84900 1.22691 1.00363 1.00516 0.95807 1.20189 0.90387 0.95615 0.86406 0.93529 1.42425 1.76463 1.11450 1.05779 1.19250 1.35696 0.94090 0.87676 0.91203 1.24736 1.02190 0.96026 0.98053 1.69677 1.50083 1.09482 1.28753 0.86159 0.77292 0.78841 0.84125 1.20609 1.21963 1.21973 0.93880 0.90812 0.93116 0.91823 0.89505 0.88023 0.87817 0.80126 0.90428 0.89032 0.89056 0.90465 0.91538 0.92123 0.90600 0.78227 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.02 37.16 0.34 -1.90 16 2 C -0.11 -1.81 2.46 -90.50 -0.22 -2.04 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.12 1.77 5.72 -3.71 -0.02 1.75 16 5 N -0.61 -8.27 2.97 -172.77 -0.51 -8.79 16 6 C 0.52 7.20 7.69 -10.98 -0.08 7.12 16 7 O -0.54 -9.45 15.45 5.55 0.09 -9.36 16 8 C -0.06 -0.67 4.39 -29.04 -0.13 -0.80 16 9 C -0.20 -2.35 4.60 -105.02 -0.48 -2.83 16 10 C 0.08 0.69 11.40 -17.23 -0.20 0.50 16 11 N -0.37 -3.58 4.01 -68.16 -0.27 -3.86 16 12 C 0.10 0.49 11.47 59.85 0.69 1.18 16 13 N -0.28 -3.81 12.58 32.95 0.41 -3.39 16 14 C 0.14 1.94 7.84 -17.30 -0.14 1.80 16 15 Cl 0.01 0.14 29.16 -51.86 -1.51 -1.37 16 16 C 0.11 1.29 6.34 -3.71 -0.02 1.27 16 17 C -0.15 -2.45 5.67 -26.59 -0.15 -2.60 16 18 C 0.18 3.42 2.19 -67.87 -0.15 3.27 16 19 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 20 N -0.72 -17.14 4.41 -53.37 -0.24 -17.37 16 21 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 22 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 25 Si 0.90 21.93 29.55 -169.99 -5.02 16.90 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.35 7.00 -51.93 -0.36 0.98 16 34 H 0.10 0.74 7.94 -51.93 -0.41 0.33 16 35 H 0.10 1.04 7.69 -51.93 -0.40 0.64 16 36 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.38 9.93 7.50 -40.82 -0.31 9.62 16 45 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 383.85 15.07 5.78 5.78 Total: -1.00 -34.48 383.85 -8.15 -42.63 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.79 Total: 5.90 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -0.82 Total: -0.18 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.12 Total: -60.31 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -1.51 Total: -1.37 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.48 -8.15 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036183039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.837 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds