Wall clock time and date at job start Sat Apr 11 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53188 * 109.49955 * 239.93411 * 2 1 3 5 5 N 1.46925 * 108.77700 * 185.38400 * 4 2 1 6 6 C 1.34775 * 120.62902 * 233.63095 * 5 4 2 7 7 O 1.21285 * 120.00383 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00081 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47076 * 179.97438 * 8 6 5 10 10 N 1.46500 * 109.46914 * 179.97438 * 9 8 6 11 11 C 1.35044 * 126.03725 * 124.71578 * 10 9 8 12 12 C 1.35366 * 107.73013 * 179.84288 * 11 10 9 13 13 Cl 1.73600 * 126.04809 * 180.16476 * 12 11 10 14 14 C 1.39931 * 107.90760 * 0.42153 * 12 11 10 15 15 N 1.30840 * 108.21179 * 359.73903 * 14 12 11 16 16 C 1.46920 * 118.73823 * 53.60843 * 5 4 2 17 17 C 1.53193 * 108.77550 * 306.39057 * 16 5 4 18 18 C 1.53040 * 109.31153 * 54.63854 * 17 16 5 19 19 H 1.08997 * 109.46043 * 178.61049 * 18 17 16 20 20 N 1.46505 * 109.46056 * 58.64998 * 18 17 16 21 21 C 1.36946 * 119.99484 * 84.93338 * 20 18 17 22 22 H 1.07997 * 120.00087 * 0.02562 * 21 20 18 23 23 C 1.38805 * 119.99308 * 179.97438 * 21 20 18 24 24 N 1.31623 * 119.99372 * 179.97438 * 23 21 20 25 25 Si 1.86791 * 120.00770 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47241 * 89.99529 * 25 23 21 27 27 H 1.48498 * 109.47806 * 210.00081 * 25 23 21 28 28 H 1.48507 * 109.47156 * 329.99832 * 25 23 21 29 29 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 31 31 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 32 32 H 1.09000 * 109.58701 * 305.17103 * 4 2 1 33 33 H 1.09005 * 109.58454 * 65.59138 * 4 2 1 34 34 H 1.08994 * 109.46897 * 300.00133 * 8 6 5 35 35 H 1.09002 * 109.46800 * 59.99803 * 8 6 5 36 36 H 1.08994 * 109.47425 * 299.99881 * 9 8 6 37 37 H 1.09002 * 109.47408 * 60.00247 * 9 8 6 38 38 H 1.08008 * 126.13481 * 359.97438 * 11 10 9 39 39 H 1.08004 * 125.89292 * 179.75594 * 14 12 11 40 40 H 1.09004 * 109.58885 * 66.17987 * 16 5 4 41 41 H 1.09000 * 109.58663 * 186.46129 * 16 5 4 42 42 H 1.09005 * 109.49580 * 174.58602 * 17 16 5 43 43 H 1.08994 * 109.49562 * 294.64929 * 17 16 5 44 44 H 0.96999 * 120.00270 * 264.93201 * 20 18 17 45 45 H 0.97003 * 119.99726 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2808 -0.3842 -2.1786 7 8 3.7724 0.1070 -3.1641 8 6 5.7804 -0.4981 -2.0817 9 6 6.4182 0.0744 -3.3491 10 7 7.8760 -0.0357 -3.2546 11 6 8.6865 -0.6425 -4.1484 12 6 9.9579 -0.5231 -3.6993 13 17 11.3807 -1.1312 -4.4865 14 6 9.9220 0.1720 -2.4854 15 7 8.6750 0.4644 -2.2183 16 6 4.1059 -1.4256 0.0300 17 6 3.5715 -0.6942 1.2655 18 6 2.0414 -0.7230 1.2482 19 1 1.6588 -0.2247 2.1389 20 7 1.5796 -2.1132 1.2305 21 6 1.4500 -2.8065 2.4044 22 1 1.6879 -2.3284 3.3430 23 6 1.0119 -4.1235 2.3877 24 7 0.8879 -4.7901 3.5158 25 14 0.5998 -4.9504 0.7642 26 1 1.8152 -5.6087 0.2214 27 1 -0.4592 -5.9685 0.9819 28 1 0.1156 -3.9314 -0.2015 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6057 -1.7214 -1.2982 33 1 1.7633 -0.1576 -2.1389 34 1 6.1318 0.0598 -1.2138 35 1 6.0591 -1.5466 -1.9769 36 1 6.0668 -0.4838 -4.2168 37 1 6.1396 1.1230 -3.4544 38 1 8.3761 -1.1330 -5.0592 39 1 10.7763 0.4240 -1.8745 40 1 3.8386 -2.4808 0.0860 41 1 5.1903 -1.3252 -0.0159 42 1 3.9345 -1.1888 2.1664 43 1 3.9166 0.3396 1.2538 44 1 1.3656 -2.5425 0.3875 45 1 0.5813 -5.7103 3.5042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036305563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:35 Heat of formation + Delta-G solvation = 50.309172 kcal Electronic energy + Delta-G solvation = -27435.398292 eV Core-core repulsion = 23515.953330 eV Total energy + Delta-G solvation = -3919.444963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.63875 -40.32064 -38.09004 -36.74399 -34.62305 -34.52886 -32.98059 -31.61025 -30.96422 -29.86364 -29.72586 -26.75575 -25.53777 -24.17656 -23.22474 -21.77875 -21.58627 -21.25560 -19.68407 -18.36716 -18.09534 -17.80357 -16.71697 -16.32690 -15.95388 -15.32944 -14.94940 -14.82690 -14.65573 -14.41661 -14.05765 -13.80845 -13.68535 -13.56765 -13.37005 -13.12476 -12.70981 -12.62219 -12.38692 -12.13681 -11.80484 -11.75944 -11.65394 -11.58818 -11.48344 -11.07937 -11.02257 -10.80365 -10.70452 -10.59547 -10.28341 -9.97396 -9.94701 -9.83564 -9.62076 -9.02607 -8.78386 -8.50197 -7.35502 -5.84936 -3.20694 1.35782 1.58817 2.23544 2.41708 2.51683 3.01690 3.28044 3.30409 3.38284 4.09064 4.31042 4.40622 4.49431 4.50154 4.64126 4.91128 4.99339 5.05347 5.06942 5.14905 5.20863 5.27057 5.35969 5.41037 5.48018 5.53315 5.55655 5.67335 5.79413 5.84111 5.98490 5.99084 6.13949 6.21310 6.30583 6.37622 6.42691 6.47281 6.59033 6.68231 6.79035 7.16532 7.42405 7.91173 8.06519 8.34108 9.11903 9.84404 10.03932 11.33417 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.002426 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.743019 B =11537.421017 C =12295.361327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.117 3.883 5 N -0.600 5.600 6 C 0.520 3.480 7 O -0.555 6.555 8 C -0.153 4.153 9 C 0.152 3.848 10 N -0.362 5.362 11 C 0.076 3.924 12 C -0.192 4.192 13 Cl -0.045 7.045 14 C 0.064 3.936 15 N -0.278 5.278 16 C 0.110 3.890 17 C -0.149 4.149 18 C 0.184 3.816 19 H 0.061 0.939 20 N -0.743 5.743 21 C -0.242 4.242 22 H 0.091 0.909 23 C 0.007 3.993 24 N -0.932 5.932 25 Si 0.878 3.122 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.184 0.816 39 H 0.191 0.809 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.360 0.640 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.037 10.465 -15.013 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.090 0.910 4 C -0.005 4.005 5 N -0.331 5.331 6 C 0.307 3.693 7 O -0.435 6.435 8 C -0.194 4.194 9 C 0.031 3.969 10 N -0.144 5.144 11 C -0.072 4.072 12 C -0.230 4.230 13 Cl -0.017 7.017 14 C -0.123 4.123 15 N -0.100 5.100 16 C -0.013 4.013 17 C -0.190 4.190 18 C 0.074 3.926 19 H 0.079 0.921 20 N -0.387 5.387 21 C -0.372 4.372 22 H 0.109 0.891 23 C -0.189 4.189 24 N -0.580 5.580 25 Si 0.709 3.291 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.201 0.799 39 H 0.208 0.792 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.194 0.806 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.887 11.154 -14.519 22.979 hybrid contribution 0.429 -1.383 -1.572 2.137 sum 14.315 9.771 -16.091 23.650 Atomic orbital electron populations 1.21680 0.94130 1.02865 1.00965 1.21754 0.96595 0.99285 0.95502 0.91009 1.21675 0.78535 1.01165 0.99130 1.48148 1.07188 1.59515 1.18268 1.20197 0.88539 0.77825 0.82741 1.90688 1.75621 1.45911 1.31286 1.21908 0.92918 1.04424 1.00140 1.21557 0.71948 1.04307 0.99093 1.48623 1.07185 1.42190 1.16370 1.22309 0.89636 0.98403 0.96850 1.20783 0.88622 1.14041 0.99584 1.98330 1.36854 1.86833 1.79710 1.23907 0.95631 0.97549 0.95213 1.77503 1.01616 1.21034 1.09801 1.21811 0.96846 0.98761 0.83840 1.22496 0.99975 0.99050 0.97510 1.20191 0.90940 0.86180 0.95286 0.92106 1.42844 1.80612 1.09394 1.05872 1.19053 1.37702 0.94070 0.86326 0.89134 1.24643 1.01497 0.96739 0.96021 1.69691 1.53003 1.10852 1.24432 0.86665 0.78186 0.79572 0.84704 1.21176 1.21693 1.20428 0.91629 0.92260 0.93524 0.91425 0.89361 0.87158 0.88189 0.87366 0.88282 0.79937 0.79178 0.90057 0.90714 0.90065 0.92806 0.80627 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.06 37.16 0.34 -1.66 16 2 C -0.11 -1.63 2.67 -90.50 -0.24 -1.87 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.73 5.42 -3.71 -0.02 1.71 16 5 N -0.60 -8.30 2.97 -172.77 -0.51 -8.81 16 6 C 0.52 6.74 7.70 -10.98 -0.08 6.66 16 7 O -0.56 -8.54 15.40 5.55 0.09 -8.45 16 8 C -0.15 -1.51 4.23 -27.88 -0.12 -1.62 16 9 C 0.15 1.33 5.80 -4.04 -0.02 1.31 16 10 N -0.36 -3.41 3.68 -61.33 -0.23 -3.64 16 11 C 0.08 0.62 11.43 -17.16 -0.20 0.43 16 12 C -0.19 -1.69 6.65 -39.97 -0.27 -1.96 16 13 Cl -0.05 -0.37 29.30 -51.86 -1.52 -1.89 16 14 C 0.06 0.58 12.02 -17.34 -0.21 0.37 16 15 N -0.28 -3.00 12.42 30.64 0.38 -2.62 16 16 C 0.11 1.51 6.08 -3.71 -0.02 1.49 16 17 C -0.15 -2.23 5.78 -26.61 -0.15 -2.38 16 18 C 0.18 3.13 2.53 -67.89 -0.17 2.96 16 19 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 20 N -0.74 -15.61 3.45 -53.38 -0.18 -15.80 16 21 C -0.24 -6.26 10.41 -15.06 -0.16 -6.41 16 22 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -28.12 13.97 55.49 0.78 -27.34 16 25 Si 0.88 21.10 27.73 -169.99 -4.71 16.39 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 29 H 0.06 1.08 7.54 -51.93 -0.39 0.69 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.09 6.64 -51.93 -0.34 0.75 16 33 H 0.09 1.30 7.01 -51.93 -0.36 0.93 16 34 H 0.11 1.09 7.69 -51.93 -0.40 0.69 16 35 H 0.10 0.93 7.94 -51.93 -0.41 0.51 16 36 H 0.11 0.81 8.03 -51.93 -0.42 0.40 16 37 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.18 0.96 8.06 -52.48 -0.42 0.53 16 39 H 0.19 1.22 8.06 -52.48 -0.42 0.80 16 40 H 0.08 1.31 7.74 -51.93 -0.40 0.91 16 41 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.36 7.60 3.79 -40.82 -0.15 7.44 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 376.60 15.07 5.68 5.68 Total: -1.00 -31.24 376.60 -8.25 -39.49 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.58 Total: 7.87 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.42 Total: -0.88 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.23 Total: -58.20 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.39 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.52 Total: -1.89 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.24 -8.25 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036305563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.797 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds