Wall clock time and date at job start Sat Apr 11 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.58889 * 2 1 4 4 C 1.53194 * 109.58497 * 239.55668 * 2 1 3 5 5 C 1.53033 * 109.31523 * 185.56561 * 4 2 1 6 6 H 1.08997 * 109.46082 * 301.37399 * 5 4 2 7 7 N 1.46504 * 109.46177 * 181.39909 * 5 4 2 8 8 C 1.36938 * 120.00022 * 154.97442 * 7 5 4 9 9 H 1.08001 * 120.00183 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99941 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99915 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 120.00105 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47076 * 90.00159 * 12 10 8 14 14 H 1.48502 * 109.46938 * 330.00419 * 12 10 8 15 15 H 1.48498 * 109.47092 * 210.00316 * 12 10 8 16 16 C 1.53046 * 109.52800 * 61.38777 * 5 4 2 17 17 C 1.53194 * 109.30641 * 298.62809 * 16 5 4 18 18 N 1.46921 * 108.77803 * 54.63651 * 17 16 5 19 19 C 1.34780 * 120.63270 * 126.41158 * 18 17 16 20 20 O 1.21471 * 119.99963 * 175.02915 * 19 18 17 21 21 C 1.48458 * 119.99609 * 355.02870 * 19 18 17 22 22 C 1.39535 * 120.54666 * 204.67548 * 21 19 18 23 23 C 1.38767 * 118.26377 * 179.76298 * 22 21 19 24 24 C 1.50697 * 120.42616 * 180.28074 * 23 22 21 25 25 F 1.39907 * 109.46829 * 210.23372 * 24 23 22 26 26 F 1.39900 * 109.47300 * 330.23403 * 24 23 22 27 27 N 1.32207 * 119.14205 * 0.51211 * 23 22 21 28 28 C 1.31877 * 121.03995 * 359.74554 * 27 23 22 29 29 N 1.31583 * 121.91939 * 359.97438 * 28 27 23 30 30 H 1.09007 * 109.46716 * 310.02099 * 1 2 3 31 31 H 1.08994 * 109.47297 * 70.02353 * 1 2 3 32 32 H 1.08999 * 109.47465 * 190.02512 * 1 2 3 33 33 H 1.09002 * 109.48771 * 65.61440 * 4 2 1 34 34 H 1.09009 * 109.50784 * 305.52434 * 4 2 1 35 35 H 0.96996 * 119.99899 * 334.96697 * 7 5 4 36 36 H 0.97002 * 119.99458 * 179.97438 * 11 10 8 37 37 H 1.08994 * 109.49931 * 58.57949 * 16 5 4 38 38 H 1.08999 * 109.49846 * 178.67935 * 16 5 4 39 39 H 1.09002 * 109.58503 * 174.42410 * 17 16 5 40 40 H 1.09001 * 109.59158 * 294.84370 * 17 16 5 41 41 H 1.08001 * 120.86732 * 359.97438 * 22 21 19 42 42 H 1.08993 * 109.47219 * 90.23884 * 24 23 22 43 43 H 1.07996 * 119.04366 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7313 -1.2443 5 6 3.5674 -0.8496 -1.1691 6 1 4.0059 0.1459 -1.0994 7 7 4.0651 -1.5189 -2.3735 8 6 5.3493 -1.3019 -2.7963 9 1 5.9952 -0.6369 -2.2422 10 6 5.8207 -1.9357 -3.9378 11 7 7.0550 -1.7266 -4.3445 12 14 4.7034 -3.0852 -4.8968 13 1 3.9682 -2.3128 -5.9302 14 1 3.7327 -3.7198 -3.9692 15 1 5.5211 -4.1368 -5.5531 16 6 3.9569 -1.6658 0.0656 17 6 3.4650 -0.9453 1.3249 18 7 2.0226 -0.6981 1.1953 19 6 1.1674 -1.1034 2.1550 20 8 -0.0101 -0.8144 2.0808 21 6 1.6647 -1.9030 3.3028 22 6 0.8037 -2.7470 4.0052 23 6 1.3198 -3.4763 5.0669 24 6 0.4348 -4.4073 5.8550 25 9 0.8933 -4.4807 7.1748 26 9 -0.8780 -3.9241 5.8435 27 7 2.5968 -3.3404 5.3810 28 6 3.3821 -2.5295 4.6992 29 7 2.9377 -1.8227 3.6821 30 1 -0.3633 0.6609 0.7871 31 1 -0.3633 0.3511 -0.9658 32 1 -0.3634 -1.0119 0.1789 33 1 1.7657 -0.1701 -2.1365 34 1 1.6030 -1.7274 -1.2888 35 1 3.4849 -2.1159 -2.8714 36 1 7.3844 -2.1699 -5.1420 37 1 3.4983 -2.6529 0.0086 38 1 5.0412 -1.7696 0.1059 39 1 3.6518 -1.5690 2.1991 40 1 3.9903 0.0038 1.4316 41 1 -0.2365 -2.8329 3.7276 42 1 0.4605 -5.4001 5.4058 43 1 4.4203 -2.4428 4.9840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044652083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:39 Heat of formation + Delta-G solvation = -35.368089 kcal Electronic energy + Delta-G solvation = -29841.397894 eV Core-core repulsion = 25366.441006 eV Total energy + Delta-G solvation = -4474.956888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.56041 -47.56163 -41.93446 -40.27523 -37.66985 -35.22739 -34.63879 -33.20959 -32.26595 -32.02491 -29.89317 -28.33254 -27.21801 -25.68782 -24.49091 -23.96317 -22.71784 -22.03928 -20.48511 -19.81695 -18.69901 -18.20934 -18.06520 -17.60290 -17.24553 -16.38144 -16.34704 -15.93986 -15.84927 -15.52189 -14.95201 -14.69759 -14.37017 -14.23401 -14.10512 -13.87487 -13.70598 -13.52574 -13.37561 -13.10437 -12.65306 -12.46895 -12.35190 -12.13121 -11.96122 -11.83967 -11.48026 -11.16225 -11.05613 -10.94450 -10.87978 -10.65729 -10.39965 -10.30445 -10.07828 -9.79516 -9.64830 -9.23138 -8.91673 -8.62189 -7.32729 -5.82383 -3.18299 -0.05953 0.13395 2.30109 2.52355 2.69335 3.11792 3.32943 3.36032 3.41184 3.42478 3.48053 3.55604 4.01293 4.25309 4.29161 4.37771 4.54034 4.73949 4.89329 4.93616 5.00239 5.18400 5.24840 5.40477 5.47410 5.51027 5.57626 5.72388 5.82963 5.91916 5.96433 6.08514 6.21558 6.23312 6.24709 6.31860 6.37457 6.57204 6.75333 6.89803 7.22576 7.30904 7.86594 7.93176 8.36691 9.14703 9.87483 10.07139 11.35842 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.002755 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.366388 B =10162.643620 C =10841.793001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.144 3.856 3 H 0.079 0.921 4 C -0.138 4.138 5 C 0.182 3.818 6 H 0.058 0.942 7 N -0.748 5.748 8 C -0.244 4.244 9 H 0.091 0.909 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.278 1.278 15 H -0.291 1.291 16 C -0.151 4.151 17 C 0.071 3.929 18 N -0.573 5.573 19 C 0.565 3.435 20 O -0.521 6.521 21 C 0.147 3.853 22 C -0.143 4.143 23 C 0.100 3.900 24 C 0.330 3.670 25 F -0.181 7.181 26 F -0.187 7.187 27 N -0.480 5.480 28 C 0.298 3.702 29 N -0.471 5.471 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.360 0.640 36 H 0.260 0.740 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.071 0.929 41 H 0.168 0.832 42 H 0.140 0.860 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.612 -2.946 20.355 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.042 3.958 3 H 0.097 0.903 4 C -0.177 4.177 5 C 0.072 3.928 6 H 0.076 0.924 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.109 0.891 10 C -0.191 4.191 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.205 1.205 15 H -0.218 1.218 16 C -0.192 4.192 17 C -0.051 4.051 18 N -0.304 5.304 19 C 0.350 3.650 20 O -0.398 6.398 21 C -0.001 4.001 22 C -0.166 4.166 23 C -0.050 4.050 24 C 0.275 3.725 25 F -0.162 7.162 26 F -0.168 7.168 27 N -0.194 5.194 28 C 0.011 3.989 29 N -0.187 5.187 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.193 0.807 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.150 0.850 40 H 0.090 0.910 41 H 0.186 0.814 42 H 0.157 0.843 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -13.052 -2.582 20.510 24.448 hybrid contribution -1.237 -0.957 -1.004 1.859 sum -14.289 -3.539 19.506 24.437 Atomic orbital electron populations 1.22209 0.92728 1.03843 1.00807 1.21432 0.95531 0.95536 0.83307 0.90299 1.22344 0.97735 1.00889 0.96743 1.20182 0.90604 0.95532 0.86488 0.92432 1.42794 1.13204 1.54720 1.28283 1.19064 0.87690 1.23275 1.07347 0.89142 1.24673 0.96103 1.00087 0.98213 1.69701 1.15103 1.47112 1.26160 0.86563 0.80329 0.81299 0.80372 1.21056 1.20450 1.21759 1.22651 1.02208 0.99455 0.94869 1.23008 0.77761 1.02478 1.01853 1.48165 1.08517 1.54695 1.19047 1.17740 0.85661 0.79974 0.81662 1.90872 1.16169 1.56646 1.76093 1.21966 0.89229 0.93764 0.95138 1.22611 1.03394 0.95406 0.95193 1.22202 0.92621 0.95889 0.94252 1.20061 0.75587 0.97127 0.79679 1.93068 1.88641 1.97254 1.37223 1.93065 1.36949 1.90341 1.96463 1.68025 1.03948 1.18286 1.29129 1.25319 1.00702 0.86828 0.86015 1.68516 1.13867 1.22650 1.13700 0.91105 0.93240 0.91330 0.90235 0.91895 0.80702 0.93029 0.92818 0.90095 0.85031 0.91040 0.81414 0.84317 0.76982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.63 37.16 0.28 -1.46 16 2 C 0.14 1.89 3.49 -67.60 -0.24 1.66 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -2.06 4.82 -26.61 -0.13 -2.19 16 5 C 0.18 3.24 2.73 -67.89 -0.19 3.05 16 6 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 7 N -0.75 -16.89 4.92 -53.38 -0.26 -17.15 16 8 C -0.24 -6.61 10.41 -15.06 -0.16 -6.77 16 9 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 10 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 11 N -0.93 -28.72 13.97 55.49 0.78 -27.95 16 12 Si 0.88 21.69 27.74 -169.99 -4.71 16.98 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 16 C -0.15 -2.40 5.66 -26.61 -0.15 -2.55 16 17 C 0.07 0.92 6.12 -3.71 -0.02 0.90 16 18 N -0.57 -7.51 2.97 -166.10 -0.49 -8.01 16 19 C 0.57 7.38 7.42 -12.05 -0.09 7.29 16 20 O -0.52 -7.52 12.24 5.39 0.07 -7.45 16 21 C 0.15 1.65 6.48 -82.63 -0.54 1.12 16 22 C -0.14 -1.37 9.07 -38.90 -0.35 -1.72 16 23 C 0.10 0.87 6.61 -82.24 -0.54 0.33 16 24 C 0.33 2.24 5.74 36.00 0.21 2.44 16 25 F -0.18 -1.60 17.09 2.25 0.04 -1.56 16 26 F -0.19 -1.48 16.55 2.25 0.04 -1.44 16 27 N -0.48 -4.48 10.08 -10.81 -0.11 -4.59 16 28 C 0.30 2.54 12.27 -92.26 -1.13 1.41 16 29 N -0.47 -4.85 6.57 -11.14 -0.07 -4.92 16 30 H 0.07 0.93 6.89 -51.92 -0.36 0.57 16 31 H 0.05 0.56 8.12 -51.93 -0.42 0.13 16 32 H 0.07 0.94 6.59 -51.93 -0.34 0.59 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 35 H 0.36 8.11 5.66 -40.82 -0.23 7.88 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.13 1.57 3.87 -78.87 -0.31 1.27 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.17 1.43 7.55 -52.49 -0.40 1.03 16 42 H 0.14 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.21 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -32.66 355.00 -7.97 -40.63 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.45 Total: 6.55 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -3.14 Total: 3.56 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -0.16 Total: -62.62 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: 0.07 Total: -7.45 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.66 -7.97 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044652083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.266 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds