Wall clock time and date at job start Sat Apr 11 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.70418 * 2 1 4 4 C 1.53194 * 109.58560 * 120.35419 * 2 1 3 5 5 C 1.53041 * 109.31267 * 174.42474 * 4 2 1 6 6 H 1.08998 * 109.46185 * 58.63717 * 5 4 2 7 7 N 1.46506 * 109.45819 * 178.61432 * 5 4 2 8 8 C 1.36932 * 119.99556 * 204.99788 * 7 5 4 9 9 H 1.08003 * 120.00272 * 359.71974 * 8 7 5 10 10 C 1.38813 * 119.99652 * 179.72735 * 8 7 5 11 11 N 1.31617 * 120.00278 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00025 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47035 * 89.99503 * 12 10 8 14 14 H 1.48497 * 109.47381 * 209.99886 * 12 10 8 15 15 H 1.48500 * 109.46989 * 329.99691 * 12 10 8 16 16 C 1.53044 * 109.53455 * 298.63170 * 5 4 2 17 17 C 1.53189 * 109.31383 * 61.36503 * 16 5 4 18 18 N 1.46919 * 109.58547 * 239.64113 * 2 1 3 19 19 C 1.34778 * 120.63318 * 6.63002 * 18 2 1 20 20 O 1.21477 * 119.99903 * 7.01194 * 19 18 2 21 21 C 1.48457 * 120.00182 * 187.01484 * 19 18 2 22 22 C 1.39532 * 120.55151 * 199.79866 * 21 19 18 23 23 C 1.38762 * 118.26670 * 180.02562 * 22 21 19 24 24 C 1.50692 * 120.42926 * 180.02562 * 23 22 21 25 25 F 1.39894 * 109.47362 * 300.00304 * 24 23 22 26 26 F 1.39902 * 109.46696 * 60.00147 * 24 23 22 27 27 N 1.32209 * 119.14134 * 359.97438 * 23 22 21 28 28 C 1.31874 * 121.04246 * 0.02562 * 27 23 22 29 29 N 1.31589 * 121.91533 * 359.71031 * 28 27 23 30 30 H 1.09004 * 109.47046 * 292.27224 * 1 2 3 31 31 H 1.08997 * 109.47009 * 52.26548 * 1 2 3 32 32 H 1.08998 * 109.47543 * 172.26669 * 1 2 3 33 33 H 1.09004 * 109.49918 * 54.46745 * 4 2 1 34 34 H 1.09010 * 109.52283 * 294.39004 * 4 2 1 35 35 H 0.97003 * 119.99695 * 24.71883 * 7 5 4 36 36 H 0.96997 * 120.00242 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.49605 * 181.32350 * 16 5 4 38 38 H 1.09009 * 109.49738 * 301.41483 * 16 5 4 39 39 H 1.08994 * 109.58919 * 185.57411 * 17 16 5 40 40 H 1.09000 * 109.70004 * 65.21981 * 17 16 5 41 41 H 1.07997 * 120.86869 * 0.02562 * 22 21 19 42 42 H 1.09000 * 109.47309 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.04666 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 1.2455 5 6 3.5675 -0.8479 1.1702 6 1 4.0061 0.1474 1.0991 7 7 4.0651 -1.5157 2.3756 8 6 5.3496 -1.2986 2.7976 9 1 5.9972 -0.6387 2.2394 10 6 5.8193 -1.9269 3.9428 11 7 5.0301 -2.7308 4.6232 12 14 7.5718 -1.6314 4.5182 13 1 7.5998 -0.4704 5.4435 14 1 8.0715 -2.8388 5.2236 15 1 8.4373 -1.3502 3.3447 16 6 3.9569 -1.6657 -0.0634 17 6 3.4650 -0.9471 -1.3236 18 7 2.0225 -0.6996 -1.1944 19 6 1.1674 -1.1062 -2.1535 20 8 -0.0030 -0.7856 -2.0995 21 6 1.6559 -1.9460 -3.2761 22 6 0.9282 -2.0363 -4.4632 23 6 1.4284 -2.8354 -5.4814 24 6 0.6825 -2.9676 -6.7841 25 9 -0.5899 -3.4959 -6.5415 26 9 0.5586 -1.7081 -7.3803 27 7 2.5683 -3.4784 -5.2942 28 6 3.2312 -3.3710 -4.1593 29 7 2.7977 -2.6211 -3.1687 30 1 -0.3633 0.3895 0.9510 31 1 -0.3633 0.6289 -0.8127 32 1 -0.3634 -1.0183 -0.1383 33 1 1.6029 -1.7253 1.2914 34 1 1.7659 -0.1672 2.1372 35 1 3.4834 -2.1084 2.8768 36 1 5.3582 -3.1696 5.4237 37 1 5.0412 -1.7697 -0.1035 38 1 3.4982 -2.6529 -0.0051 39 1 3.6518 -1.5719 -2.1970 40 1 3.9900 0.0017 -1.4341 41 1 -0.0001 -1.4984 -4.5863 42 1 1.2313 -3.6325 -7.4512 43 1 4.1595 -3.9102 -4.0412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044652085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:41 Heat of formation + Delta-G solvation = -58.191291 kcal Electronic energy + Delta-G solvation = -29797.759115 eV Core-core repulsion = 25321.812539 eV Total energy + Delta-G solvation = -4475.946576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.20039 -48.19514 -42.74898 -41.26496 -38.85933 -36.34797 -35.82759 -33.98999 -33.76789 -33.22400 -31.03723 -29.03561 -28.30992 -26.66147 -25.93068 -24.90822 -24.26327 -23.15753 -21.74986 -20.83082 -19.58218 -19.18553 -18.84642 -18.45499 -18.04862 -17.44383 -17.07881 -17.07329 -16.69476 -16.46231 -16.23990 -15.86774 -15.48209 -15.33560 -15.15745 -15.07364 -14.70479 -14.55371 -14.54715 -14.17387 -14.03021 -13.46640 -13.43860 -13.09939 -12.93092 -12.79739 -12.64711 -12.60645 -12.26979 -12.23741 -12.16713 -12.04027 -11.80324 -11.67288 -11.41487 -11.11407 -11.00743 -10.74104 -10.14805 -9.69100 -8.98223 -7.91862 -5.20431 -0.91074 -0.58148 1.38649 1.49073 1.50249 1.58523 1.62605 1.94264 2.34450 2.57738 2.64944 2.86721 3.05093 3.26802 3.41733 3.51235 3.70919 3.72607 3.80053 3.85856 4.01093 4.07970 4.14903 4.28122 4.29315 4.33620 4.55493 4.62138 4.71241 4.73650 4.82759 5.02219 5.05139 5.09491 5.18409 5.28838 5.38361 5.41741 5.51665 5.55556 5.68256 6.22268 6.29821 6.52959 6.85149 7.35744 8.11280 8.34677 9.31843 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.002608 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.723751 B =10735.395934 C =11724.275690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.148 3.852 3 H 0.091 0.909 4 C -0.122 4.122 5 C 0.171 3.829 6 H 0.047 0.953 7 N -0.737 5.737 8 C -0.233 4.233 9 H 0.079 0.921 10 C -0.078 4.078 11 N -0.972 5.972 12 Si 0.970 3.030 13 H -0.290 1.290 14 H -0.299 1.299 15 H -0.266 1.266 16 C -0.126 4.126 17 C 0.079 3.921 18 N -0.577 5.577 19 C 0.563 3.437 20 O -0.538 6.538 21 C 0.132 3.868 22 C -0.142 4.142 23 C 0.103 3.897 24 C 0.331 3.669 25 F -0.195 7.195 26 F -0.194 7.194 27 N -0.477 5.477 28 C 0.300 3.700 29 N -0.480 5.480 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.148 0.852 40 H 0.072 0.928 41 H 0.167 0.833 42 H 0.177 0.823 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.215 1.306 -25.450 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.045 3.955 3 H 0.109 0.891 4 C -0.161 4.161 5 C 0.062 3.938 6 H 0.065 0.935 7 N -0.376 5.376 8 C -0.364 4.364 9 H 0.096 0.904 10 C -0.270 4.270 11 N -0.624 5.624 12 Si 0.800 3.200 13 H -0.217 1.217 14 H -0.226 1.226 15 H -0.191 1.191 16 C -0.167 4.167 17 C -0.043 4.043 18 N -0.308 5.308 19 C 0.348 3.652 20 O -0.416 6.416 21 C -0.016 4.016 22 C -0.165 4.165 23 C -0.048 4.048 24 C 0.277 3.723 25 F -0.176 7.176 26 F -0.175 7.175 27 N -0.191 5.191 28 C 0.014 3.986 29 N -0.197 5.197 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.201 0.799 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.165 0.835 40 H 0.090 0.910 41 H 0.184 0.816 42 H 0.194 0.806 43 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -6.833 1.115 -25.271 26.202 hybrid contribution -0.103 0.152 1.219 1.233 sum -6.935 1.267 -24.052 25.064 Atomic orbital electron populations 1.22072 0.92293 1.02528 1.01663 1.21402 0.95765 0.95709 0.82589 0.89088 1.22145 0.95944 1.00503 0.97545 1.20465 0.92187 0.94764 0.86348 0.93493 1.42640 1.12037 1.54741 1.28199 1.19616 0.90030 1.21112 1.05684 0.90358 1.25540 1.01995 1.00580 0.98908 1.69823 1.37171 1.35623 1.19737 0.85179 0.80309 0.76354 0.78179 1.21688 1.22600 1.19116 1.22278 1.00740 0.99032 0.94661 1.22927 0.77583 1.01894 1.01911 1.48151 1.08579 1.55103 1.18982 1.18020 0.85392 0.79937 0.81822 1.90845 1.17416 1.57235 1.76092 1.21733 0.91103 0.94701 0.94045 1.22770 1.02159 0.98775 0.92752 1.22407 0.92994 0.92890 0.96465 1.20427 0.80361 0.81660 0.89898 1.93057 1.42997 1.86209 1.95385 1.93056 1.96225 1.44094 1.84120 1.68083 1.06068 1.19702 1.25222 1.25999 0.99486 0.90918 0.82182 1.68372 1.12000 1.07211 1.32091 0.91947 0.90855 0.93442 0.93130 0.90701 0.79874 0.94211 0.91772 0.93756 0.83541 0.91004 0.81580 0.80591 0.73658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 7.62 71.98 0.55 -2.87 16 2 C 0.15 4.05 3.49 44.98 0.16 4.21 16 3 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.12 -4.01 4.83 30.67 0.15 -3.86 16 5 C 0.17 6.43 2.73 45.02 0.12 6.56 16 6 H 0.05 1.77 8.08 -2.39 -0.02 1.76 16 7 N -0.74 -36.33 5.12 -322.80 -1.65 -37.99 16 8 C -0.23 -12.53 9.93 84.03 0.83 -11.70 16 9 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 10 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 11 N -0.97 -59.32 13.06 21.65 0.28 -59.03 16 12 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 13 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 14 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 16 C -0.13 -4.18 5.66 30.67 0.17 -4.00 16 17 C 0.08 2.02 6.16 86.36 0.53 2.56 16 18 N -0.58 -15.56 2.97 -797.74 -2.37 -17.93 16 19 C 0.56 15.24 7.41 86.97 0.64 15.88 16 20 O -0.54 -16.25 12.21 -3.64 -0.04 -16.29 16 21 C 0.13 2.99 6.49 41.99 0.27 3.26 16 22 C -0.14 -2.74 9.32 22.71 0.21 -2.53 16 23 C 0.10 1.62 6.31 42.62 0.27 1.89 16 24 C 0.33 3.81 5.58 71.23 0.40 4.21 16 25 F -0.20 -2.97 17.27 44.97 0.78 -2.19 16 26 F -0.19 -2.78 17.27 44.97 0.78 -2.00 16 27 N -0.48 -7.13 10.34 -188.12 -1.95 -9.08 16 28 C 0.30 4.45 12.28 180.92 2.22 6.67 16 29 N -0.48 -9.76 6.60 -189.15 -1.25 -11.01 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.98 6.67 -2.39 -0.02 1.96 16 32 H 0.05 1.42 6.83 -2.39 -0.02 1.41 16 33 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.37 19.99 7.80 -92.71 -0.72 19.27 16 36 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.15 3.38 3.84 -55.45 -0.21 3.17 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.17 3.11 7.86 -2.91 -0.02 3.08 16 42 H 0.18 0.78 8.12 -2.39 -0.02 0.76 16 43 H 0.25 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -68.11 359.39 3.74 -64.37 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.14 Total: 27.42 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 7.00 Total: 16.29 kcal Atomic # 7 Polarization: -128.09 SS G_CDS: -6.94 Total: -135.03 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.04 Total: -16.29 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 1.55 Total: -4.19 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -68.11 3.74 -64.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044652085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.180 kcal (2) G-P(sol) polarization free energy of solvation -68.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds