Wall clock time and date at job start Sat Apr 11 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.58629 * 2 1 4 4 C 1.53197 * 109.58666 * 120.28286 * 2 1 3 5 5 C 1.53039 * 109.31162 * 65.29289 * 4 2 1 6 6 H 1.08996 * 109.46291 * 301.34436 * 5 4 2 7 7 N 1.46504 * 109.45699 * 181.37249 * 5 4 2 8 8 C 1.36943 * 119.99296 * 155.00006 * 7 5 4 9 9 H 1.07989 * 120.00553 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99211 * 180.02562 * 8 7 5 11 11 N 1.31613 * 120.00404 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99611 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46954 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46990 * 119.99621 * 12 10 8 15 15 H 1.48498 * 109.46806 * 239.99549 * 12 10 8 16 16 C 1.53042 * 109.53961 * 61.37023 * 5 4 2 17 17 C 1.53195 * 109.30921 * 298.63330 * 16 5 4 18 18 N 1.46926 * 109.58921 * 239.71468 * 2 1 3 19 19 C 1.34774 * 120.63114 * 113.67634 * 18 2 1 20 20 O 1.21473 * 120.00008 * 359.56805 * 19 18 2 21 21 C 1.48452 * 120.00119 * 179.56651 * 19 18 2 22 22 C 1.39534 * 120.55137 * 200.43779 * 21 19 18 23 23 C 1.38765 * 118.26104 * 180.02562 * 22 21 19 24 24 C 1.50701 * 120.42159 * 180.02562 * 23 22 21 25 25 F 1.39907 * 109.47045 * 210.00118 * 24 23 22 26 26 F 1.39898 * 109.47539 * 329.99766 * 24 23 22 27 27 N 1.32206 * 119.15018 * 359.97438 * 23 22 21 28 28 C 1.31879 * 121.03704 * 0.02562 * 27 23 22 29 29 N 1.31584 * 121.91574 * 359.70805 * 28 27 23 30 30 H 1.08997 * 109.47321 * 299.99921 * 1 2 3 31 31 H 1.09005 * 109.46968 * 60.00064 * 1 2 3 32 32 H 1.09002 * 109.47137 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.50156 * 185.24805 * 4 2 1 34 34 H 1.09007 * 109.49390 * 305.31357 * 4 2 1 35 35 H 0.96996 * 120.00313 * 335.00554 * 7 5 4 36 36 H 0.97000 * 120.00048 * 180.02562 * 11 10 8 37 37 H 1.08998 * 109.49340 * 58.57891 * 16 5 4 38 38 H 1.08991 * 109.49921 * 178.68350 * 16 5 4 39 39 H 1.08994 * 109.58692 * 174.42211 * 17 16 5 40 40 H 1.08992 * 109.58819 * 294.84667 * 17 16 5 41 41 H 1.07992 * 120.86798 * 359.97438 * 22 21 19 42 42 H 1.08994 * 109.47209 * 90.00057 * 24 23 22 43 43 H 1.07991 * 119.04035 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 1.6445 -2.2033 1.1713 6 1 0.5598 -2.2830 1.0992 7 7 2.1056 -2.8956 2.3773 8 6 1.4700 -4.0329 2.7991 9 1 0.6293 -4.4197 2.2426 10 6 1.9067 -4.6886 3.9421 11 7 2.9317 -4.2175 4.6200 12 14 1.0402 -6.2404 4.5172 13 1 -0.0731 -6.5590 3.5876 14 1 2.0064 -7.3679 4.5381 15 1 0.4984 -6.0273 5.8833 16 6 2.2859 -2.8450 -0.0613 17 6 1.7751 -2.1411 -1.3225 18 7 2.0226 -0.6981 -1.1953 19 6 2.6916 -0.0285 -2.1547 20 8 2.8855 1.1652 -2.0397 21 6 3.1915 -0.7496 -3.3522 22 6 4.2185 -0.2102 -4.1276 23 6 4.6486 -0.9242 -5.2369 24 6 5.7550 -0.3873 -6.1081 25 9 5.5702 -0.8300 -7.4223 26 9 5.7338 1.0112 -6.0799 27 7 4.0762 -2.0820 -5.5192 28 6 3.1074 -2.5634 -4.7648 29 7 2.6710 -1.9237 -3.7010 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1295 -0.6466 1.2936 34 1 1.6059 -0.2770 2.1371 35 1 2.8610 -2.5484 2.8769 36 1 3.2370 -4.6759 5.4185 37 1 3.3695 -2.7437 -0.0017 38 1 2.0203 -3.9013 -0.1013 39 1 2.3021 -2.5269 -2.1950 40 1 0.7051 -2.3179 -1.4316 41 1 4.6662 0.7386 -3.8715 42 1 6.7156 -0.7437 -5.7363 43 1 2.6629 -3.5125 -5.0250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044652086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:44 Heat of formation + Delta-G solvation = -52.605487 kcal Electronic energy + Delta-G solvation = -29711.594077 eV Core-core repulsion = 25235.889720 eV Total energy + Delta-G solvation = -4475.704357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.53565 -47.53694 -41.88391 -40.05710 -37.77024 -35.14357 -34.48659 -33.05872 -32.19441 -31.82849 -29.42257 -28.24128 -27.32840 -25.73327 -24.41615 -23.91173 -22.95980 -21.98005 -20.88137 -19.13604 -18.64929 -18.14316 -17.98616 -17.37961 -17.05681 -16.49220 -16.12232 -16.00483 -15.74331 -15.34664 -14.94927 -14.70111 -14.33186 -14.06377 -13.97599 -13.84921 -13.60883 -13.54361 -13.35546 -13.03410 -12.79371 -12.60064 -12.18440 -12.01187 -11.81334 -11.43852 -11.35493 -11.11768 -10.95541 -10.90294 -10.76225 -10.59959 -10.49931 -10.28713 -10.19799 -9.81229 -9.67091 -9.37616 -8.87612 -8.62291 -7.00308 -5.81168 -3.10223 -0.04779 0.15821 2.35958 2.55412 2.72746 3.16741 3.39404 3.43861 3.45210 3.47467 3.50144 3.59196 4.03985 4.28314 4.31808 4.40657 4.54095 4.77543 4.96781 5.02951 5.16427 5.27180 5.32513 5.45827 5.49997 5.58443 5.68777 5.76529 5.87382 5.93450 6.07473 6.13596 6.22730 6.29170 6.38581 6.42672 6.49231 6.57516 6.86340 7.01957 7.25396 7.35692 7.65667 7.89207 8.37070 9.48410 10.05927 10.40446 11.41456 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.002588 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.350533 B =10815.884128 C =11609.164651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.097 0.903 4 C -0.133 4.133 5 C 0.177 3.823 6 H 0.052 0.948 7 N -0.725 5.725 8 C -0.238 4.238 9 H 0.071 0.929 10 C -0.014 4.014 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.151 4.151 17 C 0.073 3.927 18 N -0.569 5.569 19 C 0.565 3.435 20 O -0.532 6.532 21 C 0.149 3.851 22 C -0.142 4.142 23 C 0.099 3.901 24 C 0.330 3.670 25 F -0.181 7.181 26 F -0.187 7.187 27 N -0.480 5.480 28 C 0.297 3.703 29 N -0.469 5.469 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.068 0.932 41 H 0.169 0.831 42 H 0.140 0.860 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 7.812 -21.113 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.115 0.885 4 C -0.172 4.172 5 C 0.067 3.933 6 H 0.070 0.930 7 N -0.365 5.365 8 C -0.369 4.369 9 H 0.089 0.911 10 C -0.210 4.210 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.192 4.192 17 C -0.049 4.049 18 N -0.300 5.300 19 C 0.349 3.651 20 O -0.408 6.408 21 C 0.001 3.999 22 C -0.164 4.164 23 C -0.050 4.050 24 C 0.276 3.724 25 F -0.162 7.162 26 F -0.168 7.168 27 N -0.194 5.194 28 C 0.010 3.990 29 N -0.186 5.186 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.147 0.853 40 H 0.087 0.913 41 H 0.187 0.813 42 H 0.157 0.843 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.198 7.453 -21.222 22.600 hybrid contribution 0.126 -0.211 0.742 0.781 sum 2.324 7.242 -20.481 21.847 Atomic orbital electron populations 1.22135 0.94532 1.03044 1.02054 1.21344 0.94427 0.97099 0.83585 0.88488 1.22221 1.01355 0.97413 0.96201 1.20233 0.96871 0.89010 0.87170 0.93039 1.42448 1.38126 1.29239 1.26669 1.19267 1.10315 1.00968 1.06359 0.91123 1.24750 0.98533 0.99489 0.98200 1.69668 1.27700 1.41263 1.19422 0.86145 0.78657 0.83162 0.78396 1.20534 1.21908 1.21883 1.22690 1.00820 1.00675 0.95028 1.22985 1.02280 0.77914 1.01764 1.48185 1.52076 1.10551 1.19171 1.17683 0.79184 0.86218 0.81982 1.90798 1.58294 1.13738 1.77979 1.21812 0.92400 0.90520 0.95131 1.22634 0.96995 1.02316 0.94490 1.22203 0.96405 0.92111 0.94264 1.20062 0.97715 0.75675 0.78988 1.93066 1.96685 1.88913 1.37549 1.93065 1.97630 1.29736 1.96366 1.68020 1.08993 1.11578 1.30775 1.25315 0.88986 0.99453 0.85215 1.68571 1.28210 1.06691 1.15126 0.91069 0.92808 0.91429 0.91845 0.90289 0.78339 0.93552 0.92697 0.90616 0.85285 0.91327 0.81316 0.84287 0.77018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.03 37.16 0.34 -1.64 16 2 C 0.14 1.92 3.20 -67.60 -0.22 1.71 16 3 H 0.10 1.38 7.01 -51.93 -0.36 1.02 16 4 C -0.13 -2.13 5.02 -26.61 -0.13 -2.26 16 5 C 0.18 3.28 2.53 -67.89 -0.17 3.11 16 6 H 0.05 0.97 6.44 -51.93 -0.33 0.64 16 7 N -0.72 -17.40 5.12 -53.38 -0.27 -17.67 16 8 C -0.24 -6.35 9.93 -15.05 -0.15 -6.50 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 11 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 12 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 17 C 0.07 0.97 5.62 -3.69 -0.02 0.95 16 18 N -0.57 -7.88 2.69 -166.07 -0.45 -8.32 16 19 C 0.56 7.93 7.65 -12.05 -0.09 7.84 16 20 O -0.53 -8.56 16.02 5.39 0.09 -8.47 16 21 C 0.15 1.76 6.51 -82.63 -0.54 1.22 16 22 C -0.14 -1.42 9.07 -38.90 -0.35 -1.77 16 23 C 0.10 0.90 6.61 -82.24 -0.54 0.35 16 24 C 0.33 2.31 5.74 36.01 0.21 2.51 16 25 F -0.18 -1.63 17.09 2.25 0.04 -1.59 16 26 F -0.19 -1.52 16.56 2.25 0.04 -1.49 16 27 N -0.48 -4.56 10.08 -10.81 -0.11 -4.67 16 28 C 0.30 2.57 12.28 -92.26 -1.13 1.44 16 29 N -0.47 -4.97 6.49 -11.14 -0.07 -5.04 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.87 5.74 -51.93 -0.30 0.57 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.38 9.93 7.80 -40.82 -0.32 9.62 16 36 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.13 1.60 3.94 -79.29 -0.31 1.28 16 40 H 0.07 0.88 7.50 -51.93 -0.39 0.49 16 41 H 0.17 1.54 7.50 -52.49 -0.39 1.15 16 42 H 0.14 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.21 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 359.43 15.07 5.42 5.42 Total: -1.00 -32.21 359.43 -8.01 -40.23 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.34 Total: 7.83 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -3.05 Total: 3.84 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.18 Total: -62.61 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.08 Total: -3.08 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.21 -8.01 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044652086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.379 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds