Wall clock time and date at job start Sat Apr 11 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.58181 * 2 1 4 4 C 1.53193 * 109.70436 * 120.35719 * 2 1 3 5 5 C 1.53040 * 109.30890 * 174.49325 * 4 2 1 6 6 H 1.08998 * 109.45537 * 178.61342 * 5 4 2 7 7 N 1.46501 * 109.46305 * 58.64378 * 5 4 2 8 8 C 1.36931 * 120.00061 * 154.99631 * 7 5 4 9 9 H 1.07998 * 120.00258 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99937 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00077 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00005 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46717 * 90.00360 * 12 10 8 14 14 H 1.48508 * 109.46949 * 210.00095 * 12 10 8 15 15 H 1.48498 * 109.47058 * 330.00252 * 12 10 8 16 16 C 1.53035 * 109.53833 * 298.63624 * 5 4 2 17 17 C 1.52760 * 109.38659 * 61.24282 * 16 5 4 18 18 N 1.46920 * 109.00569 * 305.58848 * 17 16 5 19 19 C 1.34784 * 120.63128 * 233.58446 * 18 17 16 20 20 O 1.21282 * 120.00229 * 174.65570 * 19 18 17 21 21 C 1.50701 * 119.99624 * 354.64927 * 19 18 17 22 22 C 1.50701 * 109.46699 * 180.02562 * 21 19 18 23 23 C 1.35311 * 126.04094 * 100.00873 * 22 21 19 24 24 N 1.34949 * 107.76476 * 180.24626 * 23 22 21 25 25 C 1.46495 * 126.03052 * 179.77015 * 24 23 22 26 26 N 1.40090 * 107.94503 * 359.63652 * 24 23 22 27 27 C 1.30897 * 108.20260 * 0.36318 * 26 24 23 28 28 Cl 1.73599 * 125.91430 * 179.79972 * 27 26 24 29 29 H 1.09001 * 109.46956 * 176.10492 * 1 2 3 30 30 H 1.09003 * 109.47243 * 296.10244 * 1 2 3 31 31 H 1.09004 * 109.47819 * 56.10772 * 1 2 3 32 32 H 1.08998 * 109.49561 * 294.44442 * 4 2 1 33 33 H 1.08999 * 109.49514 * 54.54577 * 4 2 1 34 34 H 0.97004 * 119.99651 * 334.99577 * 7 5 4 35 35 H 0.97005 * 120.00355 * 179.97438 * 11 10 8 36 36 H 1.09003 * 109.49724 * 181.32416 * 16 5 4 37 37 H 1.09008 * 109.50093 * 301.38052 * 16 5 4 38 38 H 1.09002 * 109.51080 * 185.70725 * 17 16 5 39 39 H 1.08999 * 109.43096 * 65.42507 * 17 16 5 40 40 H 1.09000 * 109.46982 * 60.00833 * 21 19 18 41 41 H 1.08995 * 109.47274 * 300.00180 * 21 19 18 42 42 H 1.08000 * 126.11930 * 359.97438 * 23 22 21 43 43 H 1.08996 * 109.47391 * 89.99483 * 25 24 23 44 44 H 1.08997 * 109.47359 * 210.00017 * 25 24 23 45 45 H 1.09002 * 109.46892 * 329.99599 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0465 -0.7289 1.2445 5 6 3.5706 -0.8443 1.1673 6 1 3.9429 -1.3407 2.0633 7 7 4.1573 0.4947 1.0717 8 6 5.4416 0.7112 1.4942 9 1 6.0223 -0.1052 1.8975 10 6 5.9977 1.9798 1.4031 11 7 5.2902 2.9747 0.9111 12 14 7.7496 2.2754 1.9802 13 1 8.6870 2.0542 0.8498 14 1 7.8815 3.6723 2.4666 15 1 8.0729 1.3346 3.0827 16 6 3.9601 -1.6606 -0.0672 17 6 3.4647 -0.9472 -1.3239 18 7 2.0225 -0.6979 -1.1954 19 6 1.1669 -1.1067 -2.1533 20 8 -0.0286 -0.9822 -1.9918 21 6 1.6959 -1.7183 -3.4249 22 6 0.5429 -2.0863 -4.3228 23 6 0.0969 -1.3692 -5.3801 24 7 -0.9501 -2.0319 -5.9148 25 6 -1.7372 -1.6070 -7.0750 26 7 -1.1497 -3.1993 -5.1666 27 6 -0.2562 -3.2299 -4.2105 28 17 -0.0906 -4.4738 -3.0109 29 1 -0.3633 -1.0253 -0.0698 30 1 -0.3634 0.4522 0.9229 31 1 -0.3635 0.5731 -0.8530 32 1 1.7688 -0.1673 2.1364 33 1 1.6080 -1.7257 1.2904 34 1 3.6358 1.2279 0.7090 35 1 5.6786 3.8613 0.8478 36 1 5.0446 -1.7623 -0.1087 37 1 3.5041 -2.6490 -0.0086 38 1 3.6509 -1.5744 -2.1958 39 1 3.9911 0.0008 -1.4340 40 1 2.2707 -2.6131 -3.1860 41 1 2.3376 -0.9995 -3.9343 42 1 0.5031 -0.4319 -5.7305 43 1 -1.2922 -2.0118 -7.9839 44 1 -2.7585 -1.9746 -6.9755 45 1 -1.7465 -0.5184 -7.1287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044745764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:48 Heat of formation + Delta-G solvation = 68.248462 kcal Electronic energy + Delta-G solvation = -28111.262732 eV Core-core repulsion = 24192.595675 eV Total energy + Delta-G solvation = -3918.667057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53142 -40.07088 -37.35780 -36.79698 -34.11686 -33.89345 -32.80321 -31.87520 -31.47160 -29.12396 -28.41295 -26.91860 -25.88800 -24.00185 -23.41765 -21.99860 -21.45770 -20.75114 -19.70298 -18.20387 -17.20256 -17.10834 -16.50524 -15.76156 -15.61117 -15.37235 -15.06430 -14.57496 -14.11238 -13.91136 -13.85046 -13.70912 -13.52684 -13.24123 -13.13598 -12.94146 -12.60702 -12.43320 -12.07851 -11.89431 -11.83427 -11.76235 -11.58449 -11.30488 -11.12412 -10.91017 -10.77015 -10.63312 -10.53556 -10.37049 -10.21907 -9.90479 -9.62094 -9.43638 -8.93858 -8.83782 -8.45657 -8.02747 -6.98092 -5.79125 -3.07662 1.37904 1.55991 2.34380 2.69364 2.99073 3.41057 3.44712 3.47289 3.48434 4.25843 4.55064 4.57362 4.79499 4.85590 4.95120 5.04381 5.07412 5.28203 5.37120 5.40760 5.48292 5.51318 5.57465 5.63074 5.75729 5.80374 5.84638 5.97047 6.03372 6.08618 6.19942 6.25318 6.39180 6.49422 6.56166 6.65940 6.68262 6.79455 6.83379 6.90433 7.15914 7.26311 7.68518 7.88303 8.39571 8.59753 9.51006 10.08373 10.43427 11.43355 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018981 B = 0.002786 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.779187 B =10048.039912 C =10384.442788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.147 3.853 3 H 0.077 0.923 4 C -0.133 4.133 5 C 0.174 3.826 6 H 0.049 0.951 7 N -0.722 5.722 8 C -0.237 4.237 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.933 5.933 12 Si 0.905 3.095 13 H -0.291 1.291 14 H -0.293 1.293 15 H -0.283 1.283 16 C -0.149 4.149 17 C 0.114 3.886 18 N -0.599 5.599 19 C 0.514 3.486 20 O -0.534 6.534 21 C -0.067 4.067 22 C -0.197 4.197 23 C 0.076 3.924 24 N -0.365 5.365 25 C 0.104 3.896 26 N -0.286 5.286 27 C 0.143 3.857 28 Cl 0.006 6.994 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.182 0.818 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.931 -10.385 -14.673 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.044 3.956 3 H 0.095 0.905 4 C -0.172 4.172 5 C 0.063 3.937 6 H 0.067 0.933 7 N -0.364 5.364 8 C -0.368 4.368 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.218 1.218 14 H -0.219 1.219 15 H -0.208 1.208 16 C -0.190 4.190 17 C -0.009 4.009 18 N -0.333 5.333 19 C 0.302 3.698 20 O -0.412 6.412 21 C -0.108 4.108 22 C -0.209 4.209 23 C -0.070 4.070 24 N -0.149 5.149 25 C -0.037 4.037 26 N -0.111 5.111 27 C -0.049 4.049 28 Cl 0.033 6.967 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.199 0.801 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.453 -10.954 -15.056 22.400 hybrid contribution 1.719 0.810 0.633 2.003 sum -10.733 -10.144 -14.423 20.643 Atomic orbital electron populations 1.22181 0.93286 1.03221 1.00105 1.21216 0.94719 0.95818 0.83818 0.90480 1.22231 0.97277 1.00246 0.97450 1.20187 0.90516 0.88023 0.94925 0.93259 1.42514 1.13694 1.04713 1.75513 1.19234 0.89740 0.94086 1.33774 0.91229 1.24715 0.98210 0.95919 1.02036 1.69654 1.36385 1.00579 1.51504 0.86231 0.84855 0.77082 0.78244 1.21812 1.21892 1.20849 1.22423 1.01315 0.98026 0.97270 1.21625 0.79455 1.01633 0.98137 1.48160 1.07678 1.57213 1.20240 1.20418 0.86554 0.78375 0.84502 1.90731 1.15556 1.55660 1.79280 1.20036 0.95416 1.02363 0.92980 1.19255 1.03901 0.96624 1.01145 1.22299 0.90514 0.98709 0.95470 1.48144 1.25315 1.16395 1.25018 1.21919 0.96449 1.00971 0.84352 1.77321 1.22436 1.03986 1.07403 1.22440 0.96238 0.92754 0.93423 1.98390 1.96623 1.50385 1.51253 0.91375 0.94453 0.91568 0.90965 0.92136 0.78137 0.93550 0.90853 0.93288 0.91200 0.89850 0.88229 0.88087 0.80101 0.90497 0.89091 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 7.60 37.16 0.28 -1.85 16 2 C 0.15 2.48 3.19 -67.60 -0.22 2.26 16 3 H 0.08 1.47 6.64 -51.93 -0.34 1.13 16 4 C -0.13 -2.23 5.08 -26.61 -0.14 -2.36 16 5 C 0.17 3.25 3.10 -67.89 -0.21 3.04 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 N -0.72 -16.75 4.31 -53.39 -0.23 -16.98 16 8 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.04 13.06 55.49 0.72 -26.32 16 12 Si 0.90 21.67 29.55 -169.99 -5.02 16.65 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C -0.15 -2.41 5.76 -26.84 -0.15 -2.56 16 17 C 0.11 1.72 6.04 -3.94 -0.02 1.70 16 18 N -0.60 -9.34 2.98 -165.49 -0.49 -9.83 16 19 C 0.51 7.73 7.60 -10.98 -0.08 7.65 16 20 O -0.53 -9.35 11.43 5.56 0.06 -9.29 16 21 C -0.07 -0.79 4.45 -29.03 -0.13 -0.91 16 22 C -0.20 -2.44 4.60 -105.02 -0.48 -2.93 16 23 C 0.08 0.78 11.40 -17.22 -0.20 0.58 16 24 N -0.37 -3.83 4.01 -68.17 -0.27 -4.11 16 25 C 0.10 0.57 11.47 59.84 0.69 1.26 16 26 N -0.29 -3.92 12.58 32.94 0.41 -3.51 16 27 C 0.14 1.98 7.84 -17.30 -0.14 1.84 16 28 Cl 0.01 0.08 29.16 -51.86 -1.51 -1.44 16 29 H 0.07 1.17 6.73 -51.93 -0.35 0.82 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.15 6.77 -51.93 -0.35 0.80 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.38 9.53 6.06 -40.82 -0.25 9.29 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.07 0.84 5.96 -51.93 -0.31 0.53 16 39 H 0.08 1.49 7.74 -51.93 -0.40 1.09 16 40 H 0.10 1.07 7.47 -51.93 -0.39 0.69 16 41 H 0.10 0.97 8.11 -51.93 -0.42 0.55 16 42 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -32.63 374.84 -8.31 -40.94 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.58 Total: 7.31 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.04 Total: 0.92 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.14 Total: -60.74 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.06 Total: -9.29 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -1.51 Total: -1.44 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.63 -8.31 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044745764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.190 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds