Wall clock time and date at job start Sat Apr 11 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.58314 * 2 1 4 4 C 1.53194 * 109.58574 * 120.28182 * 2 1 3 5 5 C 1.53038 * 109.31047 * 174.56640 * 4 2 1 6 6 H 1.09004 * 109.45953 * 58.64507 * 5 4 2 7 7 N 1.46501 * 109.46029 * 178.61350 * 5 4 2 8 8 C 1.36941 * 120.00243 * 204.99726 * 7 5 4 9 9 H 1.07994 * 119.99758 * 0.02562 * 8 7 5 10 10 C 1.38804 * 119.99892 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00387 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99757 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46955 * 60.00943 * 12 10 8 14 14 H 1.48503 * 109.47087 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47366 * 300.00136 * 12 10 8 16 16 C 1.53037 * 109.53983 * 298.63725 * 5 4 2 17 17 C 1.53190 * 109.31206 * 61.36469 * 16 5 4 18 18 N 1.46922 * 108.77804 * 305.36315 * 17 16 5 19 19 C 1.34774 * 120.63592 * 233.61202 * 18 17 16 20 20 O 1.21282 * 120.00255 * 185.73531 * 19 18 17 21 21 C 1.50695 * 119.99883 * 5.73360 * 19 18 17 22 22 C 1.50703 * 109.47210 * 180.02562 * 21 19 18 23 23 C 1.35311 * 126.04699 * 100.00110 * 22 21 19 24 24 N 1.34948 * 107.76126 * 179.97438 * 23 22 21 25 25 C 1.46502 * 126.02238 * 179.97438 * 24 23 22 26 26 N 1.40087 * 107.95233 * 359.97438 * 24 23 22 27 27 C 1.30901 * 108.19899 * 359.74441 * 26 24 23 28 28 Cl 1.73594 * 125.91067 * 180.23654 * 27 26 24 29 29 H 1.08999 * 109.46702 * 294.38070 * 1 2 3 30 30 H 1.09002 * 109.46697 * 54.38241 * 1 2 3 31 31 H 1.09002 * 109.46648 * 174.38596 * 1 2 3 32 32 H 1.09002 * 109.49975 * 294.51966 * 4 2 1 33 33 H 1.08998 * 109.49468 * 54.58672 * 4 2 1 34 34 H 0.96998 * 119.99742 * 25.00722 * 7 5 4 35 35 H 0.97000 * 120.00137 * 179.97438 * 11 10 8 36 36 H 1.09004 * 109.50201 * 181.31941 * 16 5 4 37 37 H 1.08998 * 109.49852 * 301.41528 * 16 5 4 38 38 H 1.08998 * 109.58809 * 65.15596 * 17 16 5 39 39 H 1.09008 * 109.58594 * 185.57959 * 17 16 5 40 40 H 1.09015 * 109.47228 * 299.99838 * 21 19 18 41 41 H 1.08997 * 109.47340 * 60.00109 * 21 19 18 42 42 H 1.07990 * 126.11811 * 359.94996 * 23 22 21 43 43 H 1.09007 * 109.46790 * 89.99960 * 25 24 23 44 44 H 1.08999 * 109.47022 * 209.99514 * 25 24 23 45 45 H 1.08992 * 109.46932 * 330.00068 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5678 -0.8433 1.1729 6 1 4.0045 0.1530 1.1020 7 7 4.0655 -1.5095 2.3791 8 6 5.3491 -1.2897 2.8026 9 1 5.9944 -0.6249 2.2476 10 6 5.8204 -1.9205 3.9456 11 7 5.0338 -2.7303 4.6223 12 14 7.5712 -1.6201 4.5237 13 1 7.7570 -0.1747 4.8092 14 1 7.8266 -2.4057 5.7577 15 1 8.5217 -2.0416 3.4635 16 6 3.9604 -1.6607 -0.0599 17 6 3.4686 -0.9434 -1.3210 18 7 2.0255 -0.6990 -1.1936 19 6 1.1723 -1.1082 -2.1533 20 8 -0.0016 -0.8103 -2.0884 21 6 1.6769 -1.9358 -3.3071 22 6 0.5319 -2.2588 -4.2323 23 6 0.2433 -1.6260 -5.3930 24 7 -0.8522 -2.2119 -5.9199 25 6 -1.5093 -1.8390 -7.1751 26 7 -1.2505 -3.2395 -5.0551 27 6 -0.4168 -3.2709 -4.0463 28 17 -0.4802 -4.3737 -2.7071 29 1 -0.3633 0.4242 0.9360 30 1 -0.3633 0.5985 -0.8354 31 1 -0.3633 -1.0228 -0.1005 32 1 1.7638 -0.1654 2.1372 33 1 1.6046 -1.7244 1.2924 34 1 3.4858 -2.1064 2.8776 35 1 5.3633 -3.1714 5.4209 36 1 5.0450 -1.7624 -0.0987 37 1 3.5038 -2.6487 -0.0018 38 1 3.9920 0.0065 -1.4287 39 1 3.6577 -1.5683 -2.1939 40 1 2.4366 -1.3749 -3.8518 41 1 2.1104 -2.8613 -2.9283 42 1 0.7914 -0.7997 -5.8209 43 1 -1.0732 -2.4079 -7.9964 44 1 -2.5748 -2.0584 -7.1066 45 1 -1.3686 -0.7735 -7.3562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044745765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:50 Heat of formation + Delta-G solvation = 64.585986 kcal Electronic energy + Delta-G solvation = -27677.961190 eV Core-core repulsion = 23759.135317 eV Total energy + Delta-G solvation = -3918.825873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.60349 -40.17107 -37.32400 -36.81340 -34.44674 -33.98646 -32.91582 -31.88666 -31.58006 -29.31861 -28.46074 -26.93665 -25.98262 -24.21249 -22.87317 -22.05379 -21.52491 -20.68754 -20.00018 -18.78556 -17.21211 -17.10219 -16.71337 -15.91738 -15.74464 -15.38708 -15.02719 -14.80631 -14.22436 -13.92826 -13.80754 -13.65663 -13.61889 -13.33395 -13.22177 -13.01575 -12.68398 -12.57921 -12.14671 -12.01128 -11.80929 -11.75960 -11.58822 -11.54393 -11.29311 -10.88864 -10.81585 -10.72431 -10.64743 -10.40069 -10.25867 -9.82709 -9.69431 -9.49263 -8.98614 -8.89955 -8.58025 -8.31197 -6.96967 -5.76772 -3.05992 1.34937 1.49213 2.26891 2.63998 2.82076 3.25270 3.42927 3.47423 3.48724 4.18346 4.45905 4.57533 4.71787 4.74161 4.82069 4.93501 4.99919 5.13603 5.22756 5.31849 5.36450 5.39483 5.42815 5.53222 5.60891 5.67181 5.71116 5.88308 5.93361 5.99078 6.07250 6.19756 6.31161 6.43083 6.50909 6.54273 6.59103 6.60867 6.81250 6.96056 7.09070 7.20325 7.66214 7.68209 8.41500 8.42467 9.52503 10.10665 10.45213 11.45688 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020983 B = 0.002501 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.080367 B =11192.657021 C =11379.320042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.149 3.851 3 H 0.068 0.932 4 C -0.135 4.135 5 C 0.180 3.820 6 H 0.046 0.954 7 N -0.724 5.724 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.152 4.152 17 C 0.107 3.893 18 N -0.605 5.605 19 C 0.516 3.484 20 O -0.530 6.530 21 C -0.067 4.067 22 C -0.199 4.199 23 C 0.075 3.925 24 N -0.365 5.365 25 C 0.104 3.896 26 N -0.284 5.284 27 C 0.142 3.858 28 Cl 0.010 6.990 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.181 0.819 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 3.607 -24.473 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.046 3.954 3 H 0.086 0.914 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.064 0.936 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.087 0.913 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.193 4.193 17 C -0.016 4.016 18 N -0.339 5.339 19 C 0.304 3.696 20 O -0.407 6.407 21 C -0.108 4.108 22 C -0.211 4.211 23 C -0.071 4.071 24 N -0.149 5.149 25 C -0.037 4.037 26 N -0.110 5.110 27 C -0.050 4.050 28 Cl 0.038 6.962 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.198 0.802 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.567 3.244 -24.917 27.662 hybrid contribution 1.677 0.082 1.038 1.974 sum -9.890 3.326 -23.879 26.059 Atomic orbital electron populations 1.22164 0.92994 1.03470 1.00514 1.21250 0.95265 0.94974 0.83944 0.91433 1.22293 0.97518 1.00976 0.96583 1.20153 0.90921 0.94901 0.87097 0.93558 1.42431 1.12981 1.54351 1.26660 1.19176 0.89209 1.22214 1.06458 0.91250 1.24748 0.98123 0.99877 0.98201 1.69654 1.35461 1.33475 1.19457 0.86288 0.84630 0.77446 0.77922 1.21298 1.21747 1.21294 1.22675 1.01657 1.00116 0.94839 1.21860 0.79664 1.00478 0.99631 1.48221 1.07521 1.57853 1.20340 1.20454 0.86139 0.79923 0.83134 1.90729 1.17035 1.56395 1.76549 1.20036 0.95619 1.01256 0.93885 1.19240 1.02431 1.00849 0.98604 1.22259 0.90738 0.99146 0.94939 1.48158 1.22344 1.25607 1.18764 1.21923 0.99369 1.01379 0.81037 1.77353 1.22018 1.08866 1.02724 1.22501 0.95572 0.95016 0.91867 1.98411 1.97931 1.60107 1.39783 0.94019 0.90858 0.91798 0.90796 0.91831 0.78269 0.93457 0.90715 0.92114 0.91529 0.90434 0.88201 0.87921 0.80182 0.90453 0.89048 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 7.61 37.16 0.28 -1.69 16 2 C 0.15 2.16 3.48 -67.60 -0.24 1.92 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.13 -2.25 4.84 -26.61 -0.13 -2.38 16 5 C 0.18 3.38 2.73 -67.89 -0.19 3.19 16 6 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 7 N -0.72 -17.66 5.12 -53.39 -0.27 -17.93 16 8 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 11 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 12 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 17 C 0.11 1.29 6.35 -3.71 -0.02 1.27 16 18 N -0.61 -8.10 2.97 -165.22 -0.49 -8.59 16 19 C 0.52 6.93 7.50 -10.99 -0.08 6.85 16 20 O -0.53 -8.56 11.62 5.56 0.06 -8.50 16 21 C -0.07 -0.69 4.39 -29.04 -0.13 -0.82 16 22 C -0.20 -2.28 4.60 -105.01 -0.48 -2.76 16 23 C 0.08 0.68 11.40 -17.22 -0.20 0.48 16 24 N -0.37 -3.53 4.01 -68.17 -0.27 -3.80 16 25 C 0.10 0.48 11.47 59.85 0.69 1.17 16 26 N -0.28 -3.76 12.58 32.94 0.41 -3.35 16 27 C 0.14 1.90 7.84 -17.30 -0.14 1.77 16 28 Cl 0.01 0.13 29.16 -51.86 -1.51 -1.38 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.12 6.57 -51.93 -0.34 0.78 16 31 H 0.06 1.05 6.95 -51.93 -0.36 0.69 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.38 10.13 7.80 -40.82 -0.32 9.81 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.73 5.93 -51.92 -0.31 0.42 16 40 H 0.10 0.73 7.70 -51.92 -0.40 0.33 16 41 H 0.10 1.04 7.92 -51.93 -0.41 0.63 16 42 H 0.18 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -34.22 379.25 -8.43 -42.65 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.76 Total: 6.05 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.02 Total: -0.68 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.10 Total: -60.89 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.06 Total: -8.50 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.51 Total: -1.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.22 -8.43 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044745765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.239 kcal (2) G-P(sol) polarization free energy of solvation -34.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds