Wall clock time and date at job start Sat Apr 11 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58760 * 2 1 4 4 C 1.53193 * 109.58594 * 239.57034 * 2 1 3 5 5 C 1.53036 * 109.31703 * 185.57731 * 4 2 1 6 6 H 1.08997 * 109.44975 * 301.35575 * 5 4 2 7 7 N 1.46498 * 109.46364 * 181.38547 * 5 4 2 8 8 C 1.36934 * 119.99894 * 154.93160 * 7 5 4 9 9 H 1.08003 * 120.00140 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99978 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99769 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99976 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47550 * 59.99968 * 12 10 8 14 14 H 1.48506 * 109.47265 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47180 * 299.99612 * 12 10 8 16 16 C 1.53042 * 109.53724 * 61.36519 * 5 4 2 17 17 C 1.53195 * 109.31533 * 298.64134 * 16 5 4 18 18 N 1.46923 * 108.77743 * 54.62819 * 17 16 5 19 19 C 1.34779 * 120.63132 * 126.37340 * 18 17 16 20 20 O 1.21274 * 120.00016 * 174.21636 * 19 18 17 21 21 C 1.50707 * 119.99435 * 354.21408 * 19 18 17 22 22 C 1.50700 * 109.46438 * 180.02562 * 21 19 18 23 23 C 1.35309 * 126.04327 * 99.72338 * 22 21 19 24 24 N 1.34955 * 107.76358 * 179.89335 * 23 22 21 25 25 C 1.46499 * 126.02635 * 180.11413 * 24 23 22 26 26 N 1.40082 * 107.94492 * 0.36093 * 24 23 22 27 27 C 1.30892 * 108.20311 * 359.77501 * 26 24 23 28 28 Cl 1.73610 * 125.90972 * 179.97438 * 27 26 24 29 29 H 1.09008 * 109.46935 * 305.50052 * 1 2 3 30 30 H 1.08995 * 109.47648 * 65.50388 * 1 2 3 31 31 H 1.09003 * 109.47715 * 185.50551 * 1 2 3 32 32 H 1.09007 * 109.49463 * 65.62437 * 4 2 1 33 33 H 1.09000 * 109.49818 * 305.53584 * 4 2 1 34 34 H 0.96996 * 120.00135 * 334.93425 * 7 5 4 35 35 H 0.96997 * 120.00063 * 180.02562 * 11 10 8 36 36 H 1.09003 * 109.49284 * 58.58873 * 16 5 4 37 37 H 1.08997 * 109.50123 * 178.64975 * 16 5 4 38 38 H 1.08994 * 109.59116 * 174.42313 * 17 16 5 39 39 H 1.09001 * 109.58383 * 294.84486 * 17 16 5 40 40 H 1.09000 * 109.47251 * 299.99897 * 21 19 18 41 41 H 1.08998 * 109.47160 * 60.00126 * 21 19 18 42 42 H 1.07994 * 126.12185 * 359.97438 * 23 22 21 43 43 H 1.08993 * 109.47026 * 270.26778 * 25 24 23 44 44 H 1.09000 * 109.46967 * 30.26319 * 25 24 23 45 45 H 1.08998 * 109.47048 * 150.26166 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 6 3.5674 -0.8495 -1.1692 6 1 4.0059 0.1459 -1.0995 7 7 4.0651 -1.5189 -2.3735 8 6 5.3491 -1.3013 -2.7967 9 1 5.9951 -0.6366 -2.2423 10 6 5.8205 -1.9351 -3.9382 11 7 5.0331 -2.7448 -4.6140 12 14 7.5723 -1.6389 -4.5150 13 1 8.5211 -2.0601 -3.4531 14 1 7.8273 -2.4263 -5.7480 15 1 7.7611 -0.1943 -4.8029 16 6 3.9569 -1.6657 0.0655 17 6 3.4650 -0.9454 1.3249 18 7 2.0225 -0.6981 1.1954 19 6 1.1673 -1.1042 2.1546 20 8 -0.0056 -0.8033 2.0883 21 6 1.6687 -1.9325 3.3095 22 6 0.5217 -2.2526 4.2331 23 6 -0.1683 -3.4159 4.2720 24 7 -1.1095 -3.3044 5.2328 25 6 -2.0787 -4.3350 5.6133 26 7 -1.0000 -2.0274 5.7980 27 6 -0.0219 -1.3973 5.1984 28 17 0.5087 0.2199 5.5407 29 1 -0.3633 0.5968 0.8367 30 1 -0.3634 0.4261 -0.9351 31 1 -0.3635 -1.0229 0.0986 32 1 1.7659 -0.1695 -2.1366 33 1 1.6028 -1.7269 -1.2892 34 1 3.4850 -2.1161 -2.8713 35 1 5.3626 -3.1880 -5.4115 36 1 3.4982 -2.6529 0.0085 37 1 5.0411 -1.7701 0.1055 38 1 3.6518 -1.5690 2.1991 39 1 3.9903 0.0037 1.4316 40 1 2.1001 -2.8594 2.9317 41 1 2.4293 -1.3733 3.8544 42 1 0.0042 -4.2796 3.6471 43 1 -2.9807 -4.2253 5.0115 44 1 -1.6461 -5.3209 5.4432 45 1 -2.3300 -4.2256 6.6682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044745767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:55 Heat of formation + Delta-G solvation = 64.467006 kcal Electronic energy + Delta-G solvation = -27621.125944 eV Core-core repulsion = 23702.294911 eV Total energy + Delta-G solvation = -3918.831033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60981 -40.17838 -37.33437 -36.87759 -34.46015 -33.98915 -32.91820 -31.90191 -31.58587 -29.33230 -28.45838 -26.94767 -25.98727 -24.22506 -22.88231 -22.06126 -21.52848 -20.69611 -20.01365 -18.79843 -17.19719 -17.12068 -16.73196 -15.86698 -15.75400 -15.30854 -15.23185 -14.82502 -14.11767 -13.92647 -13.83345 -13.66882 -13.66106 -13.29159 -13.25745 -12.96575 -12.75794 -12.60861 -12.16628 -11.97196 -11.83768 -11.80067 -11.63582 -11.55724 -11.30805 -10.90213 -10.83020 -10.72432 -10.69381 -10.41958 -10.27250 -9.84445 -9.70879 -9.50885 -8.98548 -8.91620 -8.58382 -8.31237 -6.98952 -5.78807 -3.07881 1.30474 1.49287 2.25800 2.62387 2.82675 3.24652 3.41837 3.46626 3.47488 4.18997 4.48505 4.56122 4.71583 4.76531 4.82133 4.96711 5.02119 5.13687 5.21996 5.30829 5.34573 5.40843 5.42285 5.52127 5.60069 5.66211 5.70005 5.87547 5.93086 5.98320 6.06069 6.18247 6.29859 6.40827 6.49145 6.52363 6.58376 6.60477 6.79233 6.94522 7.07141 7.19452 7.65901 7.67076 8.39626 8.42486 9.50703 10.08600 10.43199 11.43733 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.002423 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.884437 B =11552.236974 C =11774.038834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.148 3.852 3 H 0.068 0.932 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.933 5.933 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.151 4.151 17 C 0.107 3.893 18 N -0.605 5.605 19 C 0.516 3.484 20 O -0.530 6.530 21 C -0.067 4.067 22 C -0.200 4.200 23 C 0.078 3.922 24 N -0.364 5.364 25 C 0.103 3.897 26 N -0.285 5.285 27 C 0.143 3.857 28 Cl 0.005 6.995 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.383 0.617 35 H 0.256 0.744 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.182 0.818 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.081 -1.472 21.407 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.045 3.955 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.581 5.581 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.192 4.192 17 C -0.017 4.017 18 N -0.339 5.339 19 C 0.304 3.696 20 O -0.407 6.407 21 C -0.108 4.108 22 C -0.212 4.212 23 C -0.068 4.068 24 N -0.148 5.148 25 C -0.038 4.038 26 N -0.110 5.110 27 C -0.049 4.049 28 Cl 0.033 6.967 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.199 0.801 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.491 -1.169 22.266 25.557 hybrid contribution 1.605 -0.141 -1.208 2.014 sum -10.886 -1.310 21.058 23.741 Atomic orbital electron populations 1.22169 0.93025 1.03295 1.00639 1.21258 0.95270 0.95080 0.83864 0.91364 1.22288 0.97514 1.00852 0.96630 1.20160 0.90941 0.94943 0.87094 0.93504 1.42425 1.12917 1.54228 1.26850 1.19187 0.89147 1.22160 1.06559 0.91229 1.24745 0.98136 0.99863 0.98193 1.69651 1.35451 1.33450 1.19575 0.86286 0.84603 0.77478 0.77912 1.21278 1.21742 1.21278 1.22670 1.01670 0.99970 0.94885 1.21862 0.79708 1.00578 0.99525 1.48219 1.07529 1.57903 1.20286 1.20458 0.86121 0.80047 0.83020 1.90728 1.17210 1.56322 1.76438 1.20031 0.95777 1.01262 0.93701 1.19232 1.04738 0.93969 1.03283 1.22313 0.90772 1.00108 0.93630 1.48161 1.27309 1.11056 1.28234 1.21939 0.91075 0.87714 1.03041 1.77326 1.19740 0.91786 1.22192 1.22433 0.96042 0.89280 0.97138 1.98389 1.87817 1.15851 1.94661 0.90655 0.94046 0.92030 0.90792 0.91917 0.78299 0.93461 0.92226 0.90704 0.90409 0.91480 0.87937 0.88188 0.80061 0.90361 0.88978 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 7.61 37.16 0.28 -1.67 16 2 C 0.15 2.15 3.49 -67.60 -0.24 1.91 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.13 -2.20 4.84 -26.61 -0.13 -2.33 16 5 C 0.18 3.33 2.73 -67.89 -0.19 3.14 16 6 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 7 N -0.72 -17.44 5.12 -53.39 -0.27 -17.72 16 8 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 9 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 10 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 11 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 12 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 16 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16 17 C 0.11 1.29 6.35 -3.71 -0.02 1.27 16 18 N -0.61 -8.11 2.97 -165.22 -0.49 -8.60 16 19 C 0.52 6.93 7.49 -10.98 -0.08 6.85 16 20 O -0.53 -8.56 11.60 5.56 0.06 -8.50 16 21 C -0.07 -0.69 4.40 -29.03 -0.13 -0.82 16 22 C -0.20 -2.28 4.60 -105.02 -0.48 -2.77 16 23 C 0.08 0.74 11.40 -17.22 -0.20 0.54 16 24 N -0.36 -3.59 4.01 -68.17 -0.27 -3.86 16 25 C 0.10 0.52 11.47 59.85 0.69 1.20 16 26 N -0.28 -3.70 12.58 32.95 0.41 -3.28 16 27 C 0.14 1.84 7.84 -17.31 -0.14 1.70 16 28 Cl 0.01 0.06 29.16 -51.86 -1.51 -1.45 16 29 H 0.07 1.17 6.54 -51.92 -0.34 0.84 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.98 6.96 -51.93 -0.36 0.62 16 32 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.38 9.97 7.80 -40.82 -0.32 9.65 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.08 0.74 5.93 -51.93 -0.31 0.43 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.86 7.92 -51.93 -0.41 0.45 16 41 H 0.10 0.91 7.71 -51.93 -0.40 0.51 16 42 H 0.18 1.09 8.06 -52.49 -0.42 0.66 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 45 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 379.23 15.07 5.71 5.71 Total: -1.00 -33.75 379.23 -8.43 -42.19 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.75 Total: 6.11 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.03 Total: -0.52 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.10 Total: -60.43 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.06 Total: -8.50 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.51 Total: -1.45 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.75 -8.43 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044745767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.657 kcal (2) G-P(sol) polarization free energy of solvation -33.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds