Wall clock time and date at job start Sat Apr 11 2020 05:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.70177 * 2 1 4 4 C 1.53189 * 109.59175 * 120.36273 * 2 1 3 5 5 C 1.53036 * 109.31930 * 174.42153 * 4 2 1 6 6 H 1.09003 * 109.45974 * 58.63622 * 5 4 2 7 7 N 1.46495 * 109.46554 * 178.60841 * 5 4 2 8 8 C 1.36936 * 120.00490 * 204.99786 * 7 5 4 9 9 H 1.08000 * 119.99657 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00206 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00141 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00112 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.46899 * 90.00176 * 12 10 8 14 14 H 1.48499 * 109.47591 * 210.00587 * 12 10 8 15 15 H 1.48503 * 109.46960 * 330.00676 * 12 10 8 16 16 C 1.53038 * 109.53585 * 298.63539 * 5 4 2 17 17 C 1.52760 * 109.38838 * 61.23508 * 16 5 4 18 18 N 1.46927 * 109.00888 * 305.59195 * 17 16 5 19 19 C 1.34774 * 120.63081 * 233.58374 * 18 17 16 20 20 O 1.21281 * 120.00079 * 174.66526 * 19 18 17 21 21 C 1.50702 * 120.00095 * 354.66334 * 19 18 17 22 22 C 1.53001 * 109.47056 * 179.97438 * 21 19 18 23 23 N 1.46499 * 109.47018 * 179.97438 * 22 21 19 24 24 C 1.35052 * 126.03605 * 124.71654 * 23 22 21 25 25 C 1.35373 * 107.72487 * 179.84426 * 24 23 22 26 26 Cl 1.73603 * 126.04423 * 180.16598 * 25 24 23 27 27 C 1.39929 * 107.90934 * 0.42044 * 25 24 23 28 28 N 1.30847 * 108.21286 * 359.73778 * 27 25 24 29 29 H 1.08999 * 109.46922 * 176.03213 * 1 2 3 30 30 H 1.08998 * 109.46276 * 296.02510 * 1 2 3 31 31 H 1.08994 * 109.47194 * 56.02503 * 1 2 3 32 32 H 1.09006 * 109.48917 * 294.37203 * 4 2 1 33 33 H 1.08996 * 109.50157 * 54.45949 * 4 2 1 34 34 H 0.97004 * 119.99608 * 25.00385 * 7 5 4 35 35 H 0.96992 * 120.00323 * 179.97438 * 11 10 8 36 36 H 1.09003 * 109.50164 * 181.31733 * 16 5 4 37 37 H 1.09007 * 109.49564 * 301.37973 * 16 5 4 38 38 H 1.09002 * 109.51347 * 185.71028 * 17 16 5 39 39 H 1.08998 * 109.43198 * 65.42251 * 17 16 5 40 40 H 1.09003 * 109.47064 * 60.00403 * 21 19 18 41 41 H 1.08993 * 109.47205 * 300.00286 * 21 19 18 42 42 H 1.09003 * 109.46776 * 60.00323 * 22 21 19 43 43 H 1.08993 * 109.47425 * 300.00247 * 22 21 19 44 44 H 1.07999 * 126.13483 * 359.97438 * 24 23 22 45 45 H 1.08002 * 125.88947 * 179.76271 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0437 -0.7295 1.2453 5 6 3.5676 -0.8481 1.1700 6 1 4.0062 0.1472 1.0990 7 7 4.0654 -1.5159 2.3751 8 6 5.3499 -1.2989 2.7972 9 1 5.9959 -0.6352 2.2417 10 6 5.8217 -1.9321 3.9388 11 7 7.0561 -1.7232 4.3447 12 14 4.7041 -3.0796 4.8999 13 1 4.8454 -4.4619 4.3758 14 1 5.0838 -3.0531 6.3353 15 1 3.2945 -2.6360 4.7525 16 6 3.9569 -1.6657 -0.0637 17 6 3.4644 -0.9519 -1.3213 18 7 2.0225 -0.6995 -1.1946 19 6 1.1673 -1.1069 -2.1533 20 8 -0.0282 -0.9796 -1.9934 21 6 1.6964 -1.7205 -3.4239 22 6 0.5260 -2.0931 -4.3362 23 7 1.0404 -2.6890 -5.5717 24 6 0.7022 -3.8970 -6.0720 25 6 1.3912 -4.0737 -7.2238 26 17 1.3107 -5.4648 -8.2591 27 6 2.1842 -2.9392 -7.4292 28 7 1.9746 -2.1091 -6.4397 29 1 -0.3633 -1.0252 -0.0711 30 1 -0.3632 0.4509 0.9235 31 1 -0.3633 0.5743 -0.8522 32 1 1.7661 -0.1669 2.1367 33 1 1.6030 -1.7254 1.2912 34 1 3.4850 -2.1118 2.8742 35 1 7.3857 -2.1653 5.1426 36 1 5.0412 -1.7697 -0.1040 37 1 3.4987 -2.6531 -0.0053 38 1 3.6503 -1.5797 -2.1927 39 1 3.9928 -0.0049 -1.4312 40 1 2.2689 -2.6164 -3.1838 41 1 2.3404 -1.0034 -3.9329 42 1 -0.0468 -1.1973 -4.5764 43 1 -0.1176 -2.8103 -3.8270 44 1 0.0053 -4.5956 -5.6331 45 1 2.8535 -2.7768 -8.2611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044868930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:58 Heat of formation + Delta-G solvation = 64.244926 kcal Electronic energy + Delta-G solvation = -27093.942012 eV Core-core repulsion = 23175.101349 eV Total energy + Delta-G solvation = -3918.840663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.68087 -40.62129 -37.75072 -36.77147 -34.87575 -34.71057 -32.89144 -32.04149 -30.88208 -30.02057 -29.46875 -27.22571 -25.25213 -24.28435 -22.79833 -21.98158 -21.61828 -20.98616 -20.26514 -19.09355 -17.98268 -17.60022 -16.62005 -16.42588 -15.97196 -15.52693 -14.99703 -14.89588 -14.66970 -14.31207 -14.10316 -13.89337 -13.73788 -13.60869 -13.29601 -12.94313 -12.78831 -12.60450 -12.40445 -12.29976 -12.05199 -11.94627 -11.84403 -11.68559 -11.48600 -11.08925 -11.01051 -10.93547 -10.83724 -10.59459 -10.34759 -9.98867 -9.97573 -9.66190 -9.19524 -9.00200 -8.80725 -8.59753 -7.35959 -5.83982 -3.20331 1.31887 1.55462 2.19803 2.38075 2.44266 2.89633 3.32132 3.35302 3.40636 4.03070 4.26332 4.36274 4.44583 4.52681 4.58587 4.82301 4.90037 4.95764 5.00502 5.08921 5.17133 5.18803 5.31597 5.33222 5.40919 5.44960 5.49526 5.66555 5.72982 5.83412 5.94341 5.95226 5.99062 6.17115 6.24694 6.28752 6.33878 6.39067 6.58170 6.71725 6.85645 7.12426 7.34164 7.90983 8.02449 8.34960 9.12778 9.85581 10.05013 11.34096 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.002225 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.673987 B =12578.881691 C =13627.570945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.147 3.853 3 H 0.074 0.926 4 C -0.139 4.139 5 C 0.183 3.817 6 H 0.057 0.943 7 N -0.748 5.748 8 C -0.246 4.246 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.932 5.932 12 Si 0.884 3.116 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.152 4.152 17 C 0.106 3.894 18 N -0.599 5.599 19 C 0.521 3.479 20 O -0.543 6.543 21 C -0.157 4.157 22 C 0.152 3.848 23 N -0.362 5.362 24 C 0.077 3.923 25 C -0.192 4.192 26 Cl -0.045 7.045 27 C 0.064 3.936 28 N -0.279 5.279 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.184 0.816 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.339 -2.076 -22.760 26.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.044 3.956 3 H 0.092 0.908 4 C -0.178 4.178 5 C 0.074 3.926 6 H 0.075 0.925 7 N -0.389 5.389 8 C -0.376 4.376 9 H 0.108 0.892 10 C -0.190 4.190 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.193 4.193 17 C -0.017 4.017 18 N -0.332 5.332 19 C 0.308 3.692 20 O -0.422 6.422 21 C -0.197 4.197 22 C 0.031 3.969 23 N -0.144 5.144 24 C -0.072 4.072 25 C -0.230 4.230 26 Cl -0.017 7.017 27 C -0.123 4.123 28 N -0.101 5.101 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.201 0.799 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -14.474 -0.818 -22.036 26.377 hybrid contribution -0.599 -1.947 0.387 2.074 sum -15.073 -2.766 -21.650 26.524 Atomic orbital electron populations 1.22195 0.92692 1.03635 1.00547 1.21336 0.95492 0.95175 0.83617 0.90816 1.22345 0.97511 1.00968 0.96979 1.20132 0.90759 0.95376 0.86371 0.92526 1.42787 1.13087 1.55095 1.27981 1.19052 0.87438 1.23525 1.07544 0.89164 1.24678 0.96096 1.00093 0.98177 1.69693 1.15074 1.47028 1.26166 0.86562 0.80506 0.81533 0.79968 1.21125 1.21703 1.20336 1.22571 1.02305 0.99763 0.94657 1.21822 0.79269 1.00948 0.99679 1.48212 1.07854 1.56952 1.20203 1.20177 0.86399 0.78243 0.84338 1.90769 1.15418 1.56385 1.79639 1.21978 0.99516 1.03716 0.94525 1.21549 0.95170 1.00733 0.79417 1.48617 1.33082 1.13117 1.19591 1.22316 1.00523 0.89457 0.94863 1.20791 1.09478 0.94472 0.98275 1.98333 1.98056 1.39592 1.65688 1.23905 0.99348 0.90707 0.98320 1.77490 1.08603 1.21545 1.02422 0.91139 0.93867 0.91321 0.90489 0.91894 0.80638 0.92997 0.89956 0.92328 0.90309 0.91024 0.88231 0.87336 0.88314 0.87366 0.79928 0.79184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 7.59 37.16 0.28 -1.38 16 2 C 0.15 1.86 3.50 -67.60 -0.24 1.63 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.14 -2.05 4.84 -26.61 -0.13 -2.18 16 5 C 0.18 3.20 2.73 -67.90 -0.19 3.01 16 6 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 7 N -0.75 -16.73 4.92 -53.39 -0.26 -16.99 16 8 C -0.25 -6.62 10.41 -15.06 -0.16 -6.78 16 9 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 10 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 11 N -0.93 -28.60 13.97 55.49 0.78 -27.82 16 12 Si 0.88 21.64 27.74 -169.99 -4.71 16.92 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 16 C -0.15 -2.29 5.64 -26.84 -0.15 -2.44 16 17 C 0.11 1.20 6.30 -3.93 -0.02 1.18 16 18 N -0.60 -7.08 2.98 -165.48 -0.49 -7.57 16 19 C 0.52 5.82 7.60 -10.99 -0.08 5.74 16 20 O -0.54 -7.09 11.38 5.56 0.06 -7.03 16 21 C -0.16 -1.33 4.29 -27.88 -0.12 -1.45 16 22 C 0.15 1.18 5.80 -4.04 -0.02 1.16 16 23 N -0.36 -3.14 3.68 -61.33 -0.23 -3.37 16 24 C 0.08 0.59 11.43 -17.16 -0.20 0.39 16 25 C -0.19 -1.60 6.65 -39.97 -0.27 -1.86 16 26 Cl -0.04 -0.35 29.30 -51.86 -1.52 -1.87 16 27 C 0.06 0.55 12.02 -17.34 -0.21 0.34 16 28 N -0.28 -2.81 12.42 30.64 0.38 -2.43 16 29 H 0.07 0.97 6.73 -51.93 -0.35 0.62 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.89 6.77 -51.93 -0.35 0.54 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.36 8.08 5.66 -40.82 -0.23 7.85 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.08 0.74 5.96 -51.93 -0.31 0.43 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.81 7.47 -51.93 -0.39 0.43 16 41 H 0.11 0.92 8.12 -51.93 -0.42 0.50 16 42 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 43 H 0.11 0.71 8.03 -51.93 -0.42 0.30 16 44 H 0.18 0.88 8.06 -52.49 -0.42 0.45 16 45 H 0.19 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -32.02 375.82 -8.63 -40.65 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.70 Total: 6.44 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.59 Total: -2.59 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.17 Total: -58.18 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: 0.06 Total: -7.03 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.92 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.52 Total: -1.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.02 -8.63 -40.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044868930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.895 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds