Wall clock time and date at job start Sat Apr 11 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.58577 * 2 1 4 4 C 1.53196 * 109.58546 * 120.27942 * 2 1 3 5 5 C 1.53037 * 109.31040 * 65.29551 * 4 2 1 6 6 H 1.09006 * 109.46385 * 301.34352 * 5 4 2 7 7 N 1.46507 * 109.46030 * 181.38998 * 5 4 2 8 8 C 1.36936 * 120.00251 * 155.00061 * 7 5 4 9 9 H 1.07999 * 119.99869 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99976 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99921 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99655 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47158 * 89.99926 * 12 10 8 14 14 H 1.48503 * 109.46583 * 209.99588 * 12 10 8 15 15 H 1.48490 * 109.47444 * 329.99602 * 12 10 8 16 16 C 1.53039 * 109.54101 * 61.36876 * 5 4 2 17 17 C 1.53194 * 109.31026 * 298.63204 * 16 5 4 18 18 N 1.46922 * 109.70417 * 239.64025 * 2 1 3 19 19 C 1.34779 * 120.63168 * 113.73364 * 18 2 1 20 20 O 1.21283 * 119.99688 * 359.97438 * 19 18 2 21 21 C 1.50696 * 120.00286 * 179.97438 * 19 18 2 22 22 C 1.52997 * 109.47327 * 180.02562 * 21 19 18 23 23 N 1.46497 * 109.47336 * 180.02562 * 22 21 19 24 24 C 1.35050 * 126.03981 * 124.99558 * 23 22 21 25 25 C 1.35371 * 107.72761 * 179.97438 * 24 23 22 26 26 Cl 1.73593 * 126.04629 * 180.02562 * 25 24 23 27 27 C 1.39932 * 107.90994 * 0.02562 * 25 24 23 28 28 N 1.30849 * 108.21242 * 359.71947 * 27 25 24 29 29 H 1.08999 * 109.47431 * 299.72442 * 1 2 3 30 30 H 1.09002 * 109.47386 * 59.72096 * 1 2 3 31 31 H 1.08994 * 109.47414 * 179.71647 * 1 2 3 32 32 H 1.08999 * 109.50112 * 185.25085 * 4 2 1 33 33 H 1.09004 * 109.49641 * 305.34327 * 4 2 1 34 34 H 0.97000 * 119.99437 * 334.99512 * 7 5 4 35 35 H 0.96994 * 119.99627 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.50219 * 178.68690 * 16 5 4 37 37 H 1.08994 * 109.49826 * 58.58410 * 16 5 4 38 38 H 1.09000 * 109.58692 * 294.85237 * 17 16 5 39 39 H 1.08992 * 109.70656 * 174.49158 * 17 16 5 40 40 H 1.09003 * 109.47460 * 300.00165 * 21 19 18 41 41 H 1.09001 * 109.47006 * 59.99429 * 21 19 18 42 42 H 1.09001 * 109.46697 * 299.99960 * 22 21 19 43 43 H 1.08993 * 109.47444 * 60.00009 * 22 21 19 44 44 H 1.08000 * 126.13570 * 0.02562 * 24 23 22 45 45 H 1.07997 * 125.89614 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 1.6444 -2.2033 1.1713 6 1 0.5597 -2.2830 1.0992 7 7 2.1052 -2.8955 2.3776 8 6 1.4696 -4.0327 2.7994 9 1 0.6284 -4.4191 2.2431 10 6 1.9065 -4.6889 3.9419 11 7 1.2953 -5.7816 4.3476 12 14 3.3611 -4.0200 4.9044 13 1 2.8763 -3.0688 5.9366 14 1 4.0771 -5.1422 5.5627 15 1 4.2860 -3.3174 3.9793 16 6 2.2858 -2.8449 -0.0611 17 6 1.7751 -2.1412 -1.3224 18 7 2.0253 -0.6991 -1.1935 19 6 2.6963 -0.0303 -2.1521 20 8 2.8958 1.1602 -2.0344 21 6 3.1986 -0.7616 -3.3703 22 6 3.9207 0.2215 -4.2937 23 7 4.4085 -0.4893 -5.4782 24 6 4.1420 -0.1691 -6.7628 25 6 4.7772 -1.0672 -7.5518 26 17 4.7557 -1.0975 -9.2873 27 6 5.4542 -1.9669 -6.7209 28 7 5.2384 -1.6179 -5.4784 29 1 -0.3634 0.5095 0.8924 30 1 -0.3634 0.5182 -0.8875 31 1 -0.3634 -1.0276 -0.0051 32 1 3.1294 -0.6465 1.2937 33 1 1.6054 -0.2772 2.1371 34 1 2.8605 -2.5482 2.8773 35 1 1.6004 -6.2399 5.1462 36 1 2.0202 -3.9013 -0.1012 37 1 3.3694 -2.7438 -0.0016 38 1 0.7050 -2.3179 -1.4315 39 1 2.3001 -2.5265 -2.1964 40 1 3.8902 -1.5463 -3.0635 41 1 2.3562 -1.2065 -3.9000 42 1 3.2294 1.0065 -4.6005 43 1 4.7631 0.6660 -3.7638 44 1 3.5323 0.6560 -7.1002 45 1 6.0555 -2.8020 -7.0486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044868932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:04 Heat of formation + Delta-G solvation = 49.683076 kcal Electronic energy + Delta-G solvation = -27056.969464 eV Core-core repulsion = 23137.497352 eV Total energy + Delta-G solvation = -3919.472112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.67397 -40.46186 -37.96803 -36.77751 -34.81068 -34.66767 -32.72484 -31.92805 -30.89263 -30.00212 -29.51614 -27.53342 -25.29619 -24.17598 -22.96884 -21.87168 -21.60844 -21.16763 -20.30240 -18.60166 -18.16352 -17.44016 -16.88659 -16.37190 -15.91028 -15.37085 -15.10283 -14.92983 -14.58610 -14.14629 -14.09651 -13.85251 -13.68439 -13.62813 -13.51193 -13.11120 -12.85885 -12.62044 -12.58790 -12.11042 -12.08393 -11.88731 -11.82275 -11.64593 -11.50270 -11.09583 -11.01639 -10.92189 -10.83179 -10.62043 -10.27726 -10.02758 -9.90216 -9.80319 -9.64498 -8.98424 -8.81995 -8.68566 -7.34668 -5.83221 -3.19321 1.32288 1.54983 2.20475 2.37759 2.43676 2.89481 3.33365 3.36567 3.41707 4.03710 4.24862 4.35010 4.43084 4.53689 4.59428 4.83237 4.92104 4.95860 5.01797 5.03614 5.15309 5.17438 5.30715 5.32171 5.41138 5.47230 5.48744 5.59528 5.65347 5.72392 5.90656 5.95795 5.97867 6.10794 6.17352 6.28249 6.30961 6.39046 6.45492 6.72346 6.86902 7.13447 7.32036 7.91744 7.98522 8.35784 9.13725 9.86632 10.06095 11.34869 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.002151 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.513627 B =13015.038732 C =13903.493468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.097 0.903 4 C -0.138 4.138 5 C 0.183 3.817 6 H 0.060 0.940 7 N -0.748 5.748 8 C -0.245 4.245 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.932 5.932 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.278 1.278 16 C -0.152 4.152 17 C 0.104 3.896 18 N -0.597 5.597 19 C 0.522 3.478 20 O -0.553 6.553 21 C -0.154 4.154 22 C 0.151 3.849 23 N -0.363 5.363 24 C 0.076 3.924 25 C -0.191 4.191 26 Cl -0.045 7.045 27 C 0.064 3.936 28 N -0.278 5.278 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.184 0.816 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.576 12.916 -23.870 27.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.115 0.885 4 C -0.177 4.177 5 C 0.073 3.927 6 H 0.078 0.922 7 N -0.390 5.390 8 C -0.375 4.375 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.580 5.580 12 Si 0.715 3.285 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.193 4.193 17 C -0.019 4.019 18 N -0.330 5.330 19 C 0.309 3.691 20 O -0.432 6.432 21 C -0.194 4.194 22 C 0.031 3.969 23 N -0.144 5.144 24 C -0.072 4.072 25 C -0.230 4.230 26 Cl -0.017 7.017 27 C -0.123 4.123 28 N -0.099 5.099 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.126 0.874 43 H 0.117 0.883 44 H 0.201 0.799 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.683 13.136 -22.515 26.325 hybrid contribution 0.896 0.288 -0.247 0.973 sum 4.579 13.424 -22.762 26.819 Atomic orbital electron populations 1.22143 0.94753 1.02970 1.02056 1.21181 0.94190 0.97067 0.83683 0.88532 1.22265 1.01286 0.97323 0.96810 1.20174 0.97424 0.88748 0.86314 0.92183 1.42801 1.37736 1.30437 1.27996 1.19041 1.11295 0.99823 1.07323 0.89196 1.24680 0.98944 0.97219 0.98227 1.69697 1.42764 1.19444 1.26072 0.86559 0.83437 0.78165 0.80387 1.21071 1.21747 1.20379 1.22645 1.01067 1.00997 0.94566 1.21910 1.01317 0.78917 0.99754 1.48245 1.54615 1.09731 1.20360 1.20200 0.77782 0.87196 0.83908 1.90695 1.58247 1.15142 1.79096 1.21916 1.02493 1.00067 0.94966 1.21548 0.99967 0.92660 0.82755 1.48622 1.37579 1.22949 1.05285 1.22299 1.00622 1.00288 0.84041 1.20789 1.12323 1.03526 0.86364 1.98331 1.98155 1.98402 1.06816 1.23923 0.99600 0.99723 0.89040 1.77536 1.11359 1.00727 1.20232 0.91191 0.92813 0.91489 0.91929 0.90382 0.80658 0.93016 0.90052 0.92223 0.91059 0.90300 0.87097 0.88202 0.87365 0.88283 0.79943 0.79163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.03 37.15 0.34 -1.49 16 2 C 0.14 1.80 3.20 -67.60 -0.22 1.58 16 3 H 0.10 1.29 7.01 -51.93 -0.36 0.92 16 4 C -0.14 -2.03 5.02 -26.61 -0.13 -2.16 16 5 C 0.18 3.17 2.53 -67.89 -0.17 3.00 16 6 H 0.06 1.07 6.45 -51.93 -0.33 0.74 16 7 N -0.75 -16.70 4.92 -53.38 -0.26 -16.96 16 8 C -0.25 -6.58 10.41 -15.06 -0.16 -6.74 16 9 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 10 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 11 N -0.93 -28.59 13.97 55.49 0.78 -27.81 16 12 Si 0.88 21.70 27.74 -169.99 -4.71 16.99 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 16 C -0.15 -2.31 5.66 -26.61 -0.15 -2.46 16 17 C 0.10 1.19 5.93 -3.71 -0.02 1.17 16 18 N -0.60 -7.14 2.68 -165.23 -0.44 -7.59 16 19 C 0.52 6.10 7.70 -10.99 -0.08 6.01 16 20 O -0.55 -7.89 15.40 5.55 0.09 -7.81 16 21 C -0.15 -1.35 4.24 -27.89 -0.12 -1.47 16 22 C 0.15 1.22 5.80 -4.04 -0.02 1.20 16 23 N -0.36 -3.20 3.68 -61.33 -0.23 -3.43 16 24 C 0.08 0.57 11.43 -17.16 -0.20 0.37 16 25 C -0.19 -1.59 6.65 -39.97 -0.27 -1.85 16 26 Cl -0.05 -0.34 29.30 -51.86 -1.52 -1.86 16 27 C 0.06 0.56 12.02 -17.34 -0.21 0.35 16 28 N -0.28 -2.91 12.42 30.64 0.38 -2.53 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.79 5.74 -51.93 -0.30 0.49 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.36 8.08 5.66 -40.82 -0.23 7.85 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.76 7.49 -51.93 -0.39 0.38 16 39 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 40 H 0.11 1.04 7.70 -51.93 -0.40 0.64 16 41 H 0.10 0.75 7.94 -51.93 -0.41 0.34 16 42 H 0.11 0.70 8.03 -51.93 -0.42 0.29 16 43 H 0.10 0.88 8.10 -51.93 -0.42 0.46 16 44 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.19 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -32.63 377.33 -8.29 -40.92 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.55 Total: 6.82 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.51 Total: -2.43 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.22 Total: -58.31 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.81 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.52 Total: -1.86 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.63 -8.29 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044868932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.608 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds