Wall clock time and date at job start Sat Apr 11 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.69805 * 2 1 4 4 C 1.53157 * 109.58980 * 239.63499 * 2 1 3 5 5 C 1.53042 * 109.32548 * 185.56997 * 4 2 1 6 6 H 1.09002 * 109.45944 * 181.38164 * 5 4 2 7 7 N 1.46501 * 109.46215 * 301.35780 * 5 4 2 8 8 C 1.36940 * 120.00015 * 205.02726 * 7 5 4 9 9 H 1.07998 * 119.99929 * 0.02562 * 8 7 5 10 10 C 1.38807 * 119.99758 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00103 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00040 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.46705 * 90.00604 * 12 10 8 14 14 H 1.48495 * 109.47551 * 330.00290 * 12 10 8 15 15 H 1.48506 * 109.47296 * 210.00096 * 12 10 8 16 16 C 1.53041 * 109.52584 * 61.37254 * 5 4 2 17 17 C 1.53189 * 109.31522 * 298.63853 * 16 5 4 18 18 N 1.46929 * 108.77302 * 54.63567 * 17 16 5 19 19 C 1.34776 * 120.63099 * 126.37034 * 18 17 16 20 20 O 1.21275 * 120.00094 * 174.21748 * 19 18 17 21 21 C 1.50703 * 119.99754 * 354.20992 * 19 18 17 22 22 C 1.52995 * 109.46918 * 180.02562 * 21 19 18 23 23 N 1.46501 * 109.47504 * 180.02562 * 22 21 19 24 24 C 1.35042 * 126.04353 * 125.00031 * 23 22 21 25 25 C 1.35373 * 107.73034 * 179.97438 * 24 23 22 26 26 Cl 1.73598 * 126.04696 * 179.97438 * 25 24 23 27 27 C 1.39925 * 107.90707 * 359.97438 * 25 24 23 28 28 N 1.30853 * 108.21228 * 359.75746 * 27 25 24 29 29 H 1.08997 * 109.46923 * 305.43292 * 1 2 3 30 30 H 1.08997 * 109.46741 * 65.43667 * 1 2 3 31 31 H 1.08999 * 109.47014 * 185.43227 * 1 2 3 32 32 H 1.09001 * 109.48304 * 65.62412 * 4 2 1 33 33 H 1.08999 * 109.50680 * 305.53087 * 4 2 1 34 34 H 0.97004 * 119.99628 * 25.02929 * 7 5 4 35 35 H 0.97002 * 120.00646 * 180.02562 * 11 10 8 36 36 H 1.09003 * 109.49701 * 58.60041 * 16 5 4 37 37 H 1.09005 * 109.49464 * 178.65484 * 16 5 4 38 38 H 1.08996 * 109.58899 * 174.42116 * 17 16 5 39 39 H 1.09001 * 109.58907 * 294.71032 * 17 16 5 40 40 H 1.08992 * 109.47279 * 300.00389 * 21 19 18 41 41 H 1.09008 * 109.46792 * 60.00554 * 21 19 18 42 42 H 1.09004 * 109.47575 * 300.00666 * 22 21 19 43 43 H 1.08998 * 109.47350 * 60.00256 * 22 21 19 44 44 H 1.08003 * 126.13233 * 359.93903 * 24 23 22 45 45 H 1.08006 * 125.89521 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2450 5 6 3.5675 -0.8479 -1.1700 6 1 3.9377 -1.3450 -2.0667 7 7 4.1571 0.4898 -1.0749 8 6 5.4412 0.7040 -1.4997 9 1 6.0192 -0.1133 -1.9052 10 6 5.9999 1.9714 -1.4090 11 7 7.2339 2.1774 -1.8178 12 14 4.9999 3.3850 -0.7083 13 1 5.2090 3.4590 0.7602 14 1 3.5597 3.1614 -0.9926 15 1 5.4363 4.6586 -1.3351 16 6 3.9569 -1.6656 0.0637 17 6 3.4651 -0.9468 1.3239 18 7 2.0226 -0.6994 1.1946 19 6 1.1673 -1.1068 2.1533 20 8 -0.0056 -0.8059 2.0873 21 6 1.6687 -1.9364 3.3072 22 6 0.5043 -2.2627 4.2445 23 7 0.9916 -3.0687 5.3666 24 6 0.8414 -2.7793 6.6771 25 6 1.4299 -3.7697 7.3880 26 17 1.5156 -3.8726 9.1188 27 6 1.9569 -4.6957 6.4811 28 7 1.6898 -4.2792 5.2697 29 1 -0.3633 0.5958 0.8373 30 1 -0.3633 0.4272 -0.9347 31 1 -0.3633 -1.0230 0.0973 32 1 1.7659 -0.1668 -2.1363 33 1 1.6031 -1.7254 -1.2909 34 1 3.6378 1.2239 -0.7109 35 1 7.6246 3.0630 -1.7541 36 1 3.4984 -2.6528 0.0054 37 1 5.0412 -1.7700 0.1035 38 1 3.6518 -1.5716 2.1973 39 1 3.9921 0.0010 1.4332 40 1 2.1001 -2.8628 2.9282 41 1 2.4292 -1.3778 3.8529 42 1 0.0723 -1.3364 4.6235 43 1 -0.2560 -2.8214 3.6987 44 1 0.3420 -1.9128 7.0847 45 1 2.4882 -5.6006 6.7368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044868933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:07 Heat of formation + Delta-G solvation = 66.075140 kcal Electronic energy + Delta-G solvation = -27605.166467 eV Core-core repulsion = 23686.405168 eV Total energy + Delta-G solvation = -3918.761299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.64191 -40.56344 -37.83705 -36.74560 -34.76970 -34.42892 -32.80683 -32.02603 -30.82413 -29.85492 -29.45829 -27.21321 -25.22662 -24.20723 -23.17259 -22.08821 -21.58632 -21.07790 -19.96403 -18.47961 -17.84603 -17.79610 -16.62579 -16.20077 -16.12603 -15.23384 -15.10299 -14.69898 -14.63021 -14.37447 -14.06171 -13.85409 -13.65889 -13.57523 -13.21620 -13.17313 -12.74943 -12.55647 -12.36494 -12.22735 -12.06228 -11.78315 -11.73342 -11.56544 -11.38544 -11.11815 -10.98341 -10.85270 -10.80264 -10.55856 -10.31589 -10.12153 -9.93590 -9.65547 -9.12317 -9.02747 -8.77137 -8.41859 -7.36651 -5.84982 -3.21145 1.35869 1.58969 2.23454 2.41804 2.53576 3.01318 3.28892 3.31449 3.38613 4.08977 4.32248 4.41880 4.50403 4.50700 4.64095 4.91286 5.01164 5.05922 5.08259 5.14979 5.20924 5.26087 5.37014 5.42225 5.48202 5.49086 5.53350 5.65319 5.79700 5.89672 5.94847 5.99125 6.07424 6.22872 6.31642 6.37126 6.43065 6.52984 6.56483 6.62615 6.85037 7.16567 7.47813 7.90924 8.12502 8.33961 9.11700 9.84266 10.03607 11.33289 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015076 B = 0.002478 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.836879 B =11298.109643 C =12003.646185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.143 3.857 3 H 0.072 0.928 4 C -0.137 4.137 5 C 0.179 3.821 6 H 0.061 0.939 7 N -0.746 5.746 8 C -0.244 4.244 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.879 3.121 13 H -0.285 1.285 14 H -0.278 1.278 15 H -0.290 1.290 16 C -0.149 4.149 17 C 0.110 3.890 18 N -0.597 5.597 19 C 0.520 3.480 20 O -0.546 6.546 21 C -0.156 4.156 22 C 0.152 3.848 23 N -0.362 5.362 24 C 0.076 3.924 25 C -0.192 4.192 26 Cl -0.045 7.045 27 C 0.064 3.936 28 N -0.278 5.278 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.360 0.640 35 H 0.260 0.740 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.183 0.817 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.489 -11.578 16.308 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.041 3.959 3 H 0.090 0.910 4 C -0.176 4.176 5 C 0.069 3.931 6 H 0.079 0.921 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.709 3.291 13 H -0.211 1.211 14 H -0.204 1.204 15 H -0.216 1.216 16 C -0.190 4.190 17 C -0.012 4.012 18 N -0.329 5.329 19 C 0.307 3.693 20 O -0.426 6.426 21 C -0.197 4.197 22 C 0.032 3.968 23 N -0.143 5.143 24 C -0.072 4.072 25 C -0.230 4.230 26 Cl -0.017 7.017 27 C -0.123 4.123 28 N -0.100 5.100 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.127 0.873 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.117 0.883 44 H 0.200 0.800 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -14.782 -11.577 14.904 23.972 hybrid contribution -0.349 1.308 1.541 2.051 sum -15.131 -10.269 16.445 24.593 Atomic orbital electron populations 1.22195 0.92887 1.03235 1.00940 1.21273 0.95146 0.95599 0.83899 0.91015 1.22287 0.97427 1.00665 0.97190 1.20166 0.90126 0.87148 0.95651 0.92120 1.42873 1.14247 1.05187 1.76703 1.19063 0.87975 0.95974 1.34360 0.89111 1.24653 0.96037 0.97071 1.01150 1.69686 1.13465 1.22088 1.52713 0.86647 0.79823 0.83500 0.79086 1.21126 1.20412 1.21641 1.22486 1.02045 0.98014 0.96440 1.21794 0.78842 1.01742 0.98819 1.48208 1.07949 1.56672 1.20082 1.20161 0.85980 0.79980 0.83142 1.90742 1.17134 1.57625 1.77093 1.21961 0.99369 1.02354 0.95974 1.21551 0.95852 0.94578 0.84864 1.48625 1.43055 1.17594 1.05069 1.22306 1.00658 1.00154 0.84095 1.20783 1.14678 1.01116 0.86455 1.98330 1.97846 1.98194 1.07367 1.23906 0.99717 1.00048 0.88658 1.77507 1.14442 0.96693 1.21317 0.90587 0.93826 0.91915 0.90538 0.91546 0.80648 0.93002 0.92803 0.90165 0.90741 0.90068 0.87300 0.88346 0.87402 0.88334 0.79954 0.79196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.61 37.16 0.28 -1.58 16 2 C 0.14 2.12 3.19 -67.61 -0.22 1.90 16 3 H 0.07 1.19 6.64 -51.93 -0.34 0.85 16 4 C -0.14 -2.01 5.07 -26.63 -0.13 -2.15 16 5 C 0.18 3.09 3.10 -67.89 -0.21 2.88 16 6 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 7 N -0.75 -16.05 4.11 -53.38 -0.22 -16.27 16 8 C -0.24 -6.42 10.41 -15.06 -0.16 -6.57 16 9 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 10 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 11 N -0.93 -28.30 13.97 55.49 0.78 -27.53 16 12 Si 0.88 21.30 27.73 -169.99 -4.71 16.58 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.34 6.52 56.52 0.37 -5.98 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 16 C -0.15 -2.23 5.78 -26.61 -0.15 -2.38 16 17 C 0.11 1.53 6.09 -3.71 -0.02 1.50 16 18 N -0.60 -8.16 2.97 -165.24 -0.49 -8.65 16 19 C 0.52 6.50 7.50 -10.98 -0.08 6.41 16 20 O -0.55 -7.73 11.55 5.56 0.06 -7.66 16 21 C -0.16 -1.50 4.25 -27.88 -0.12 -1.62 16 22 C 0.15 1.30 5.80 -4.04 -0.02 1.28 16 23 N -0.36 -3.37 3.68 -61.33 -0.23 -3.60 16 24 C 0.08 0.62 11.43 -17.16 -0.20 0.42 16 25 C -0.19 -1.68 6.65 -39.97 -0.27 -1.95 16 26 Cl -0.05 -0.37 29.30 -51.86 -1.52 -1.89 16 27 C 0.06 0.58 12.02 -17.34 -0.21 0.37 16 28 N -0.28 -2.98 12.42 30.64 0.38 -2.60 16 29 H 0.08 1.12 6.54 -51.93 -0.34 0.78 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.88 6.96 -51.93 -0.36 0.52 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.36 7.76 3.92 -40.82 -0.16 7.60 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.07 0.84 5.93 -51.93 -0.31 0.54 16 39 H 0.08 1.32 7.74 -51.93 -0.40 0.92 16 40 H 0.11 1.08 7.93 -51.93 -0.41 0.66 16 41 H 0.10 0.90 7.71 -51.92 -0.40 0.50 16 42 H 0.11 0.78 8.03 -51.93 -0.42 0.37 16 43 H 0.10 0.88 8.10 -51.93 -0.42 0.46 16 44 H 0.18 0.95 8.06 -52.48 -0.42 0.52 16 45 H 0.19 1.22 8.06 -52.48 -0.42 0.79 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -31.10 371.64 -8.49 -39.59 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.54 Total: 7.82 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.60 Total: -1.39 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.22 Total: -58.65 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.06 Total: -7.66 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.58 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.52 Total: -1.89 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.10 -8.49 -39.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044868933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.663 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds