Wall clock time and date at job start Sat Apr 11 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.70113 * 2 1 4 4 C 1.53193 * 109.58828 * 239.64284 * 2 1 3 5 5 C 1.53037 * 109.31371 * 185.58229 * 4 2 1 6 6 C 1.53033 * 109.53121 * 61.37045 * 5 4 2 7 7 H 1.09001 * 109.49341 * 58.57874 * 6 5 4 8 8 N 1.46498 * 109.49998 * 178.67870 * 6 5 4 9 9 C 1.34779 * 119.99852 * 205.00221 * 8 6 5 10 10 O 1.21470 * 120.00173 * 0.02562 * 9 8 6 11 11 C 1.48455 * 119.99834 * 179.97438 * 9 8 6 12 12 C 1.39528 * 120.55248 * 179.97438 * 11 9 8 13 13 C 1.38761 * 118.26803 * 180.02562 * 12 11 9 14 14 C 1.50700 * 120.42811 * 179.97438 * 13 12 11 15 15 F 1.39902 * 109.47102 * 209.99792 * 14 13 12 16 16 F 1.39899 * 109.46880 * 329.99349 * 14 13 12 17 17 N 1.32208 * 119.14440 * 359.97438 * 13 12 11 18 18 C 1.31878 * 121.03484 * 0.02562 * 17 13 12 19 19 N 1.31574 * 121.91980 * 359.71604 * 18 17 13 20 20 C 1.53194 * 109.31239 * 298.61690 * 6 5 4 21 21 N 1.46925 * 109.58564 * 120.35463 * 2 1 3 22 22 C 1.36939 * 120.63220 * 353.37604 * 21 2 1 23 23 H 1.08007 * 120.00024 * 29.04874 * 22 21 2 24 24 C 1.38809 * 120.00052 * 209.05097 * 22 21 2 25 25 N 1.31618 * 120.00290 * 15.06168 * 24 22 21 26 26 Si 1.86802 * 120.00128 * 195.05654 * 24 22 21 27 27 H 1.48502 * 109.46833 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47183 * 119.99971 * 26 24 22 29 29 H 1.48500 * 109.47259 * 240.00056 * 26 24 22 30 30 H 1.08998 * 109.46950 * 180.35600 * 1 2 3 31 31 H 1.08994 * 109.46869 * 300.35360 * 1 2 3 32 32 H 1.08994 * 109.46918 * 60.35518 * 1 2 3 33 33 H 1.09007 * 109.49638 * 65.62415 * 4 2 1 34 34 H 1.09006 * 109.52222 * 305.54839 * 4 2 1 35 35 H 1.09003 * 109.45877 * 181.39070 * 5 4 2 36 36 H 1.09006 * 109.45625 * 301.35525 * 5 4 2 37 37 H 0.97001 * 120.00253 * 24.99695 * 8 6 5 38 38 H 1.08007 * 120.86679 * 359.97438 * 12 11 9 39 39 H 1.08998 * 109.47553 * 89.99677 * 14 13 12 40 40 H 1.08001 * 119.03510 * 179.97438 * 18 17 13 41 41 H 1.08995 * 109.60023 * 294.86429 * 20 6 5 42 42 H 1.09003 * 109.70236 * 174.50344 * 20 6 5 43 43 H 0.96998 * 120.00359 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8481 -1.1700 6 6 3.9566 -1.6659 0.0635 7 1 3.4978 -2.6529 0.0051 8 7 5.4139 -1.8059 0.1177 9 6 5.9670 -2.8489 0.7679 10 8 5.2572 -3.6732 1.3085 11 6 7.4437 -2.9910 0.8224 12 6 8.0286 -4.0659 1.4926 13 6 9.4134 -4.1520 1.5143 14 6 10.0962 -5.2923 2.2246 15 9 11.3389 -4.8653 2.7049 16 9 9.3028 -5.7162 3.2960 17 7 10.1260 -3.2206 0.9038 18 6 9.5410 -2.2173 0.2791 19 7 8.2316 -2.0979 0.2284 20 6 3.4650 -0.9470 1.3238 21 7 2.0225 -0.6995 1.1945 22 6 1.1537 -1.1127 2.1690 23 1 0.1360 -1.3675 1.9125 24 6 1.5810 -1.2041 3.4865 25 7 2.7037 -0.6249 3.8560 26 14 0.5627 -2.1490 4.7353 27 1 -0.6452 -2.7024 4.0720 28 1 1.3726 -3.2608 5.2950 29 1 0.1514 -1.2356 5.8315 30 1 -0.3633 -1.0276 0.0064 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 1.7660 -0.1669 -2.1369 34 1 1.6030 -1.7254 -1.2919 35 1 3.9378 -1.3449 -2.0668 36 1 4.0062 0.1473 -1.0990 37 1 5.9808 -1.1479 -0.3143 38 1 7.4194 -4.8111 1.9826 39 1 10.2400 -6.1194 1.5294 40 1 10.1545 -1.4743 -0.2086 41 1 3.9903 0.0019 1.4318 42 1 3.6520 -1.5697 2.1987 43 1 3.0021 -0.6884 4.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071610002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:23 Heat of formation + Delta-G solvation = -61.557233 kcal Electronic energy + Delta-G solvation = -29684.176676 eV Core-core repulsion = 25208.084142 eV Total energy + Delta-G solvation = -4476.092534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.40131 -47.40617 -41.56243 -39.44252 -37.67021 -34.81240 -34.37727 -32.84630 -32.80325 -30.72459 -29.86455 -28.06809 -26.42911 -25.36401 -24.61185 -23.87670 -22.30738 -21.17211 -20.29472 -19.44881 -18.54815 -18.43532 -17.97438 -17.20685 -16.53095 -16.13875 -15.86221 -15.58275 -15.55804 -15.30361 -14.92465 -14.22994 -14.19058 -13.99107 -13.81470 -13.71657 -13.59707 -13.39263 -13.28359 -12.79582 -12.43423 -12.03533 -11.92090 -11.51693 -11.42787 -11.17074 -11.12016 -10.90920 -10.73648 -10.62832 -10.42323 -10.32477 -10.25008 -10.15148 -9.97015 -9.79150 -9.50770 -9.50258 -8.66513 -8.44472 -6.63962 -5.75724 -3.20351 0.12435 0.33001 2.65426 2.75606 3.01455 3.41317 3.49177 3.50430 3.51614 3.55727 3.62008 3.86026 4.22985 4.43445 4.51700 4.56450 4.63345 5.04766 5.17295 5.30410 5.34181 5.45209 5.54372 5.64455 5.74651 5.92387 6.07501 6.23955 6.25662 6.31424 6.36301 6.41243 6.44703 6.60253 6.67723 6.80601 7.02111 7.10575 7.25988 7.43648 7.70117 7.74739 7.85463 8.32318 8.48307 9.22559 9.86848 10.41684 11.32411 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.013165 B = 0.003123 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.383002 B = 8964.502587 C =10567.733368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.113 3.887 7 H 0.085 0.915 8 N -0.691 5.691 9 C 0.562 3.438 10 O -0.511 6.511 11 C 0.151 3.849 12 C -0.141 4.141 13 C 0.097 3.903 14 C 0.331 3.669 15 F -0.182 7.182 16 F -0.185 7.185 17 N -0.483 5.483 18 C 0.299 3.701 19 N -0.483 5.483 20 C 0.167 3.833 21 N -0.583 5.583 22 C -0.252 4.252 23 H 0.072 0.928 24 C 0.006 3.994 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.277 1.277 28 H -0.288 1.288 29 H -0.291 1.291 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.404 0.596 38 H 0.171 0.829 39 H 0.138 0.862 40 H 0.211 0.789 41 H 0.019 0.981 42 H 0.096 0.904 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.886 -5.125 -10.666 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.009 3.991 7 H 0.104 0.896 8 N -0.341 5.341 9 C 0.343 3.657 10 O -0.385 6.385 11 C 0.002 3.998 12 C -0.164 4.164 13 C -0.053 4.053 14 C 0.276 3.724 15 F -0.163 7.163 16 F -0.167 7.167 17 N -0.198 5.198 18 C 0.011 3.989 19 N -0.199 5.199 20 C 0.040 3.960 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.089 0.911 24 C -0.193 4.193 25 N -0.545 5.545 26 Si 0.730 3.270 27 H -0.202 1.202 28 H -0.215 1.215 29 H -0.218 1.218 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.239 0.761 38 H 0.189 0.811 39 H 0.155 0.845 40 H 0.227 0.773 41 H 0.037 0.963 42 H 0.114 0.886 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.906 -5.015 -10.519 18.143 hybrid contribution -0.416 -0.586 1.044 1.267 sum 13.491 -5.601 -9.475 17.411 Atomic orbital electron populations 1.21799 0.95929 1.01467 1.00200 1.20505 0.93125 0.93601 0.87001 0.95655 1.22050 0.94131 1.01388 0.98993 1.21678 0.97509 0.99757 0.96484 1.22168 0.76853 1.01279 0.98845 0.89649 1.45947 1.09070 1.25649 1.53406 1.17618 0.84699 0.82979 0.80394 1.90867 1.60843 1.42245 1.44518 1.21980 0.95792 0.90208 0.91806 1.22719 0.95291 1.00088 0.98258 1.22185 0.91396 0.95605 0.96084 1.20039 0.74858 0.93016 0.84479 1.93058 1.42250 1.91473 1.89536 1.93080 1.74286 1.90472 1.58821 1.68001 1.41538 1.02417 1.07812 1.25068 0.88104 0.93481 0.92217 1.68402 1.06982 1.27058 1.17473 1.21101 0.83717 0.97061 0.94133 1.44031 1.02558 1.64713 1.19327 1.19198 0.94714 1.38182 0.86097 0.91053 1.25078 0.97713 0.99450 0.97046 1.69998 1.23359 1.44366 1.16803 0.86261 0.79669 0.79632 0.81450 1.20179 1.21489 1.21777 0.92744 0.92004 0.94309 0.92544 0.92011 0.92932 0.92057 0.76066 0.81145 0.84454 0.77280 0.96327 0.88593 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 7.95 37.16 0.30 -2.21 16 2 C 0.16 3.29 3.50 -67.60 -0.24 3.05 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -2.07 5.37 -26.61 -0.14 -2.21 16 5 C -0.12 -1.82 5.35 -26.70 -0.14 -1.96 16 6 C 0.11 2.14 2.60 -67.81 -0.18 1.96 16 7 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 8 N -0.69 -11.28 5.07 -54.44 -0.28 -11.56 16 9 C 0.56 9.71 7.80 -12.05 -0.09 9.61 16 10 O -0.51 -10.70 16.09 5.39 0.09 -10.62 16 11 C 0.15 2.13 6.79 -82.63 -0.56 1.56 16 12 C -0.14 -1.75 9.07 -38.91 -0.35 -2.11 16 13 C 0.10 1.05 6.61 -82.24 -0.54 0.50 16 14 C 0.33 2.86 5.74 36.01 0.21 3.07 16 15 F -0.18 -1.91 17.09 2.25 0.04 -1.87 16 16 F -0.19 -1.93 16.56 2.25 0.04 -1.90 16 17 N -0.48 -5.27 10.08 -10.81 -0.11 -5.38 16 18 C 0.30 2.97 12.27 -92.27 -1.13 1.84 16 19 N -0.48 -5.84 9.70 -11.14 -0.11 -5.95 16 20 C 0.17 3.97 4.87 -3.71 -0.02 3.95 16 21 N -0.58 -14.26 2.99 -164.77 -0.49 -14.75 16 22 C -0.25 -6.81 8.61 -15.06 -0.13 -6.94 16 23 H 0.07 1.88 6.20 -52.48 -0.33 1.55 16 24 C 0.01 0.17 4.96 -17.43 -0.09 0.08 16 25 N -0.90 -26.54 11.14 55.49 0.62 -25.92 16 26 Si 0.90 22.19 29.58 -169.99 -5.03 17.17 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H 0.05 1.02 7.40 -51.93 -0.38 0.63 16 31 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.40 5.59 7.99 -40.82 -0.33 5.27 16 38 H 0.17 2.08 7.37 -52.48 -0.39 1.69 16 39 H 0.14 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.21 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.10 2.69 6.06 -51.93 -0.31 2.38 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -32.83 362.87 -8.35 -41.18 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.47 Total: 3.92 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: -3.11 Total: 10.20 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -0.37 Total: -63.55 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.08 Total: -3.77 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.83 -8.35 -41.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071610002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.380 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds