Wall clock time and date at job start Sat Apr 11 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.70113 * 2 1 4 4 C 1.53193 * 109.58828 * 239.64284 * 2 1 3 5 5 C 1.53037 * 109.31371 * 185.58229 * 4 2 1 6 6 C 1.53033 * 109.53121 * 61.37045 * 5 4 2 7 7 H 1.09001 * 109.49341 * 58.57874 * 6 5 4 8 8 N 1.46498 * 109.49998 * 178.67870 * 6 5 4 9 9 C 1.34779 * 119.99852 * 205.00221 * 8 6 5 10 10 O 1.21470 * 120.00173 * 0.02562 * 9 8 6 11 11 C 1.48455 * 119.99834 * 179.97438 * 9 8 6 12 12 C 1.39528 * 120.55248 * 179.97438 * 11 9 8 13 13 C 1.38761 * 118.26803 * 180.02562 * 12 11 9 14 14 C 1.50700 * 120.42811 * 179.97438 * 13 12 11 15 15 F 1.39902 * 109.47102 * 209.99792 * 14 13 12 16 16 F 1.39899 * 109.46880 * 329.99349 * 14 13 12 17 17 N 1.32208 * 119.14440 * 359.97438 * 13 12 11 18 18 C 1.31878 * 121.03484 * 0.02562 * 17 13 12 19 19 N 1.31574 * 121.91980 * 359.71604 * 18 17 13 20 20 C 1.53194 * 109.31239 * 298.61690 * 6 5 4 21 21 N 1.46925 * 109.58564 * 120.35463 * 2 1 3 22 22 C 1.36939 * 120.63220 * 353.37604 * 21 2 1 23 23 H 1.08007 * 120.00024 * 29.04874 * 22 21 2 24 24 C 1.38809 * 120.00052 * 209.05097 * 22 21 2 25 25 N 1.31618 * 120.00290 * 15.06168 * 24 22 21 26 26 Si 1.86802 * 120.00128 * 195.05654 * 24 22 21 27 27 H 1.48502 * 109.46833 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47183 * 119.99971 * 26 24 22 29 29 H 1.48500 * 109.47259 * 240.00056 * 26 24 22 30 30 H 1.08998 * 109.46950 * 180.35600 * 1 2 3 31 31 H 1.08994 * 109.46869 * 300.35360 * 1 2 3 32 32 H 1.08994 * 109.46918 * 60.35518 * 1 2 3 33 33 H 1.09007 * 109.49638 * 65.62415 * 4 2 1 34 34 H 1.09006 * 109.52222 * 305.54839 * 4 2 1 35 35 H 1.09003 * 109.45877 * 181.39070 * 5 4 2 36 36 H 1.09006 * 109.45625 * 301.35525 * 5 4 2 37 37 H 0.97001 * 120.00253 * 24.99695 * 8 6 5 38 38 H 1.08007 * 120.86679 * 359.97438 * 12 11 9 39 39 H 1.08998 * 109.47553 * 89.99677 * 14 13 12 40 40 H 1.08001 * 119.03510 * 179.97438 * 18 17 13 41 41 H 1.08995 * 109.60023 * 294.86429 * 20 6 5 42 42 H 1.09003 * 109.70236 * 174.50344 * 20 6 5 43 43 H 0.96998 * 120.00359 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8481 -1.1700 6 6 3.9566 -1.6659 0.0635 7 1 3.4978 -2.6529 0.0051 8 7 5.4139 -1.8059 0.1177 9 6 5.9670 -2.8489 0.7679 10 8 5.2572 -3.6732 1.3085 11 6 7.4437 -2.9910 0.8224 12 6 8.0286 -4.0659 1.4926 13 6 9.4134 -4.1520 1.5143 14 6 10.0962 -5.2923 2.2246 15 9 11.3389 -4.8653 2.7049 16 9 9.3028 -5.7162 3.2960 17 7 10.1260 -3.2206 0.9038 18 6 9.5410 -2.2173 0.2791 19 7 8.2316 -2.0979 0.2284 20 6 3.4650 -0.9470 1.3238 21 7 2.0225 -0.6995 1.1945 22 6 1.1537 -1.1127 2.1690 23 1 0.1360 -1.3675 1.9125 24 6 1.5810 -1.2041 3.4865 25 7 2.7037 -0.6249 3.8560 26 14 0.5627 -2.1490 4.7353 27 1 -0.6452 -2.7024 4.0720 28 1 1.3726 -3.2608 5.2950 29 1 0.1514 -1.2356 5.8315 30 1 -0.3633 -1.0276 0.0064 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 1.7660 -0.1669 -2.1369 34 1 1.6030 -1.7254 -1.2919 35 1 3.9378 -1.3449 -2.0668 36 1 4.0062 0.1473 -1.0990 37 1 5.9808 -1.1479 -0.3143 38 1 7.4194 -4.8111 1.9826 39 1 10.2400 -6.1194 1.5294 40 1 10.1545 -1.4743 -0.2086 41 1 3.9903 0.0019 1.4318 42 1 3.6520 -1.5697 2.1987 43 1 3.0021 -0.6884 4.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071610002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:22 Heat of formation + Delta-G solvation = -83.409164 kcal Electronic energy + Delta-G solvation = -29685.124247 eV Core-core repulsion = 25208.084142 eV Total energy + Delta-G solvation = -4477.040105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.15606 -48.17312 -42.53289 -40.84850 -39.26275 -36.21714 -35.51413 -34.66069 -33.76051 -32.21525 -31.72460 -28.92436 -27.91534 -27.08942 -25.84413 -24.82389 -23.99693 -22.49895 -21.75333 -21.05269 -19.67772 -19.34486 -18.67912 -18.35525 -18.07411 -17.49899 -16.95424 -16.86236 -16.78296 -16.54781 -16.10362 -15.80309 -15.49419 -15.39768 -15.08294 -14.97722 -14.94363 -14.49066 -14.48127 -14.14375 -14.06363 -13.53285 -13.11113 -12.81396 -12.76001 -12.72610 -12.57366 -12.35099 -12.28702 -12.13911 -12.05855 -12.00879 -11.76252 -11.57736 -11.33770 -11.15447 -11.09511 -10.67178 -10.56164 -10.20960 -8.64207 -7.86454 -5.32520 -0.90010 -0.55244 1.40235 1.44606 1.48241 1.52835 1.71335 2.04003 2.47177 2.49099 2.67764 2.84576 3.01374 3.30044 3.34450 3.57202 3.66913 3.78217 3.81995 3.92587 4.08261 4.10961 4.24527 4.31598 4.37208 4.57942 4.70553 4.79117 4.88323 4.90682 5.01006 5.07147 5.16636 5.24640 5.30240 5.32875 5.43306 5.55009 5.60730 5.70206 5.76795 6.30811 6.42350 6.61119 6.99787 7.15490 7.88705 8.37754 9.18969 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.013165 B = 0.003123 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.383002 B = 8964.502587 C =10567.733368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.152 3.848 3 H 0.022 0.978 4 C -0.117 4.117 5 C -0.108 4.108 6 C 0.128 3.872 7 H 0.061 0.939 8 N -0.681 5.681 9 C 0.558 3.442 10 O -0.557 6.557 11 C 0.136 3.864 12 C -0.149 4.149 13 C 0.104 3.896 14 C 0.330 3.670 15 F -0.192 7.192 16 F -0.198 7.198 17 N -0.484 5.484 18 C 0.305 3.695 19 N -0.487 5.487 20 C 0.179 3.821 21 N -0.603 5.603 22 C -0.248 4.248 23 H 0.077 0.923 24 C -0.054 4.054 25 N -0.936 5.936 26 Si 0.955 3.045 27 H -0.261 1.261 28 H -0.300 1.300 29 H -0.290 1.290 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.419 0.581 38 H 0.166 0.834 39 H 0.189 0.811 40 H 0.253 0.747 41 H -0.003 1.003 42 H 0.045 0.955 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.888 -5.066 -13.461 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.039 0.961 4 C -0.156 4.156 5 C -0.146 4.146 6 C 0.022 3.978 7 H 0.079 0.921 8 N -0.332 5.332 9 C 0.342 3.658 10 O -0.434 6.434 11 C -0.012 4.012 12 C -0.172 4.172 13 C -0.046 4.046 14 C 0.276 3.724 15 F -0.173 7.173 16 F -0.179 7.179 17 N -0.199 5.199 18 C 0.018 3.982 19 N -0.203 5.203 20 C 0.051 3.949 21 N -0.327 5.327 22 C -0.378 4.378 23 H 0.095 0.905 24 C -0.249 4.249 25 N -0.583 5.583 26 Si 0.784 3.216 27 H -0.185 1.185 28 H -0.228 1.228 29 H -0.217 1.217 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.257 0.743 38 H 0.183 0.817 39 H 0.205 0.795 40 H 0.269 0.731 41 H 0.015 0.985 42 H 0.064 0.936 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.908 -4.924 -13.372 20.623 hybrid contribution -0.658 -0.547 1.862 2.049 sum 14.250 -5.471 -11.510 19.117 Atomic orbital electron populations 1.21734 0.94670 1.01224 1.01076 1.20832 0.94357 0.93400 0.86715 0.96065 1.21953 0.94287 1.01071 0.98323 1.21659 0.97277 0.99965 0.95665 1.21712 0.78075 0.99825 0.98147 0.92073 1.45780 1.08263 1.25906 1.53235 1.18119 0.86218 0.82297 0.79171 1.90834 1.62504 1.43854 1.46254 1.21466 0.94056 0.91825 0.93888 1.22706 0.96213 0.99785 0.98486 1.22529 0.90670 0.95990 0.95438 1.20547 0.73817 0.93484 0.84578 1.93038 1.42774 1.91717 1.89735 1.93058 1.74702 1.90481 1.59653 1.68138 1.41436 1.02533 1.07767 1.25947 0.87481 0.93648 0.91118 1.68391 1.07879 1.26517 1.17527 1.20769 0.83914 0.95353 0.94827 1.44331 1.02435 1.65622 1.20283 1.19543 0.95194 1.36393 0.86662 0.90513 1.25786 0.98987 1.01101 0.98987 1.70163 1.25193 1.46526 1.16410 0.85368 0.78703 0.78021 0.79462 1.18474 1.22778 1.21716 0.93424 0.94374 0.90233 0.88456 0.92610 0.89426 0.90891 0.74341 0.81672 0.79494 0.73128 0.98532 0.93632 0.94718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 7.95 71.98 0.57 -3.98 16 2 C 0.15 5.91 3.50 44.98 0.16 6.07 16 3 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -3.50 5.37 30.67 0.16 -3.33 16 5 C -0.11 -3.09 5.35 30.62 0.16 -2.93 16 6 C 0.13 4.88 2.60 45.07 0.12 5.00 16 7 H 0.06 2.65 7.58 -2.39 -0.02 2.63 16 8 N -0.68 -22.42 5.07 -444.47 -2.25 -24.68 16 9 C 0.56 20.00 7.80 86.97 0.68 20.68 16 10 O -0.56 -24.81 16.09 -3.62 -0.06 -24.87 16 11 C 0.14 3.83 6.79 41.99 0.29 4.11 16 12 C -0.15 -3.72 9.07 22.71 0.21 -3.51 16 13 C 0.10 2.10 6.61 42.63 0.28 2.39 16 14 C 0.33 5.09 5.74 71.24 0.41 5.50 16 15 F -0.19 -3.67 17.09 44.97 0.77 -2.90 16 16 F -0.20 -3.98 16.56 44.97 0.74 -3.23 16 17 N -0.48 -9.43 10.08 -188.13 -1.90 -11.33 16 18 C 0.31 5.27 12.27 180.93 2.22 7.49 16 19 N -0.49 -11.08 9.70 -189.16 -1.84 -12.92 16 20 C 0.18 8.87 4.87 86.36 0.42 9.29 16 21 N -0.60 -30.13 2.99 -675.21 -2.02 -32.15 16 22 C -0.25 -13.72 8.61 84.03 0.72 -12.99 16 23 H 0.08 4.09 6.20 -2.91 -0.02 4.07 16 24 C -0.05 -3.13 4.96 84.86 0.42 -2.71 16 25 N -0.94 -58.13 11.14 21.65 0.24 -57.89 16 26 Si 0.96 47.28 29.58 68.60 2.03 49.31 16 27 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 28 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 29 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 30 H 0.05 1.71 7.40 -2.39 -0.02 1.70 16 31 H 0.04 1.49 7.66 -2.39 -0.02 1.47 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.10 2.19 8.14 -2.38 -0.02 2.18 16 34 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.42 11.20 7.99 -92.71 -0.74 10.46 16 38 H 0.17 4.23 7.37 -2.91 -0.02 4.21 16 39 H 0.19 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.25 1.95 8.06 -2.91 -0.02 1.92 16 41 H 0.00 -0.18 8.14 -2.39 -0.02 -0.19 16 42 H 0.05 2.72 6.06 -2.39 -0.01 2.71 16 43 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -76.96 362.87 2.86 -74.09 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.32 Total: 15.50 kcal Atomic # 6 Polarization: 24.24 SS G_CDS: 6.82 Total: 31.06 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -7.77 Total: -138.96 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.06 Total: -24.87 kcal Atomic # 9 Polarization: -7.65 SS G_CDS: 1.51 Total: -6.14 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -76.96 2.86 -74.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071610002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.316 kcal (2) G-P(sol) polarization free energy of solvation -76.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds