Wall clock time and date at job start Sat Apr 11 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.58278 * 2 1 4 4 C 1.53190 * 109.58753 * 120.42723 * 2 1 3 5 5 C 1.53034 * 109.31105 * 174.42545 * 4 2 1 6 6 C 1.53045 * 109.53817 * 298.62962 * 5 4 2 7 7 H 1.08994 * 109.50231 * 301.42096 * 6 5 4 8 8 N 1.46495 * 109.52728 * 181.33253 * 6 5 4 9 9 C 1.34772 * 120.00117 * 155.14707 * 8 6 5 10 10 O 1.21480 * 120.00118 * 0.02562 * 9 8 6 11 11 C 1.48460 * 120.00115 * 180.02562 * 9 8 6 12 12 C 1.39535 * 120.54787 * 179.72346 * 11 9 8 13 13 C 1.38766 * 118.25995 * 179.73706 * 12 11 9 14 14 C 1.50698 * 120.42407 * 180.26495 * 13 12 11 15 15 F 1.39903 * 109.47218 * 300.27777 * 14 13 12 16 16 F 1.39900 * 109.47350 * 60.27582 * 14 13 12 17 17 N 1.32201 * 119.14939 * 0.53458 * 13 12 11 18 18 C 1.31887 * 121.03525 * 359.72776 * 17 13 12 19 19 N 1.31587 * 121.91328 * 359.97438 * 18 17 13 20 20 C 1.53201 * 109.30799 * 61.36868 * 6 5 4 21 21 N 1.46920 * 109.58551 * 239.71870 * 2 1 3 22 22 C 1.36936 * 120.63115 * 6.62075 * 21 2 1 23 23 H 1.08004 * 120.00194 * 330.16138 * 22 21 2 24 24 C 1.38822 * 119.99855 * 150.15781 * 22 21 2 25 25 N 1.31620 * 119.99894 * 344.49212 * 24 22 21 26 26 Si 1.86801 * 119.99668 * 164.49152 * 24 22 21 27 27 H 1.48506 * 109.46773 * 90.00394 * 26 24 22 28 28 H 1.48501 * 109.46790 * 210.00013 * 26 24 22 29 29 H 1.48498 * 109.47308 * 330.00413 * 26 24 22 30 30 H 1.09000 * 109.47123 * 180.28580 * 1 2 3 31 31 H 1.09007 * 109.47196 * 300.28328 * 1 2 3 32 32 H 1.08998 * 109.47588 * 60.28210 * 1 2 3 33 33 H 1.09004 * 109.49524 * 294.37550 * 4 2 1 34 34 H 1.09000 * 109.49817 * 54.46895 * 4 2 1 35 35 H 1.09006 * 109.45844 * 178.61587 * 5 4 2 36 36 H 1.08998 * 109.46826 * 58.65429 * 5 4 2 37 37 H 0.97003 * 120.00175 * 335.15653 * 8 6 5 38 38 H 1.08002 * 120.87309 * 359.97438 * 12 11 9 39 39 H 1.09005 * 109.47128 * 180.28250 * 14 13 12 40 40 H 1.07999 * 119.04243 * 179.97438 * 18 17 13 41 41 H 1.09003 * 109.58526 * 185.58007 * 20 6 5 42 42 H 1.08993 * 109.58627 * 65.15231 * 20 6 5 43 43 H 0.96997 * 119.99522 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5675 -0.8493 1.1690 6 6 3.9569 -1.6656 -0.0656 7 1 3.4984 -2.6527 -0.0087 8 7 5.4141 -1.8058 -0.1203 9 6 5.9670 -2.8463 -0.7744 10 8 5.2569 -3.6678 -1.3191 11 6 7.4437 -2.9887 -0.8293 12 6 8.0281 -4.0646 -1.4985 13 6 9.4130 -4.1481 -1.5249 14 6 10.0954 -5.2864 -2.2387 15 9 9.6951 -6.5004 -1.6702 16 9 9.7424 -5.2666 -3.5923 17 7 10.1259 -3.2192 -0.9112 18 6 9.5412 -2.2178 -0.2829 19 7 8.2318 -2.0951 -0.2369 20 6 3.4650 -0.9452 -1.3250 21 7 2.0225 -0.6980 -1.1953 22 6 1.1537 -1.1100 -2.1703 23 1 0.1396 -1.3773 -1.9121 24 6 1.5763 -1.1839 -3.4905 25 7 2.6871 -0.5825 -3.8606 26 14 0.5686 -2.1369 -4.7418 27 1 -0.4251 -1.2302 -5.3710 28 1 1.4688 -2.6865 -5.7872 29 1 -0.1391 -3.2515 -4.0620 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3634 0.5183 0.8875 32 1 -0.3634 0.5094 -0.8925 33 1 1.7660 -0.1694 2.1366 34 1 1.6030 -1.7269 1.2892 35 1 3.9378 -1.3473 2.0652 36 1 4.0062 0.1461 1.0994 37 1 5.9812 -1.1497 0.3145 38 1 7.4186 -4.8108 -1.9865 39 1 11.1760 -5.1794 -2.1433 40 1 10.1548 -1.4771 0.2081 41 1 3.6517 -1.5689 -2.1992 42 1 3.9902 0.0039 -1.4317 43 1 2.9826 -0.6346 -4.7830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071610009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:25 Heat of formation + Delta-G solvation = -62.378015 kcal Electronic energy + Delta-G solvation = -29712.192807 eV Core-core repulsion = 25236.064681 eV Total energy + Delta-G solvation = -4476.128126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.45974 -47.44669 -41.58987 -39.45063 -37.66756 -34.84230 -34.40827 -32.83463 -32.78251 -30.72419 -29.87382 -28.06218 -26.47955 -25.39861 -24.63956 -23.85396 -22.31207 -21.18520 -20.29238 -19.44131 -18.73657 -18.44419 -17.71105 -17.31420 -16.53045 -16.13411 -15.89755 -15.58994 -15.56169 -15.34613 -14.93412 -14.36677 -14.15598 -14.00468 -13.81542 -13.79467 -13.60576 -13.38395 -13.29530 -12.79687 -12.43741 -11.96153 -11.89319 -11.52445 -11.47263 -11.26390 -11.13574 -10.92161 -10.70514 -10.63272 -10.43324 -10.34656 -10.26910 -10.18326 -9.98558 -9.81445 -9.52308 -9.49725 -8.66549 -8.43784 -6.62518 -5.75911 -3.20491 0.08260 0.31038 2.65175 2.67788 2.98409 3.41208 3.49129 3.49640 3.51118 3.57119 3.65876 3.92503 4.16937 4.50818 4.51822 4.53555 4.59470 5.02330 5.14106 5.30635 5.34397 5.45355 5.54625 5.64505 5.72669 5.92823 6.07866 6.23925 6.25872 6.27792 6.36998 6.41662 6.45022 6.60671 6.67853 6.80510 7.02925 7.11165 7.25524 7.39585 7.68010 7.74066 7.85716 8.31967 8.48808 9.22727 9.87035 10.42502 11.32447 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.003185 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.103029 B = 8788.636900 C =10312.363873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.113 3.887 7 H 0.085 0.915 8 N -0.691 5.691 9 C 0.561 3.439 10 O -0.510 6.510 11 C 0.151 3.849 12 C -0.133 4.133 13 C 0.097 3.903 14 C 0.329 3.671 15 F -0.187 7.187 16 F -0.185 7.185 17 N -0.486 5.486 18 C 0.298 3.702 19 N -0.480 5.480 20 C 0.169 3.831 21 N -0.582 5.582 22 C -0.254 4.254 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.278 1.278 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.404 0.596 38 H 0.168 0.832 39 H 0.140 0.860 40 H 0.212 0.788 41 H 0.093 0.907 42 H 0.019 0.981 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.238 -3.764 9.817 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.008 3.992 7 H 0.104 0.896 8 N -0.341 5.341 9 C 0.343 3.657 10 O -0.384 6.384 11 C 0.002 3.998 12 C -0.156 4.156 13 C -0.053 4.053 14 C 0.274 3.726 15 F -0.168 7.168 16 F -0.166 7.166 17 N -0.201 5.201 18 C 0.010 3.990 19 N -0.196 5.196 20 C 0.041 3.959 21 N -0.306 5.306 22 C -0.384 4.384 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.204 1.204 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.239 0.761 38 H 0.186 0.814 39 H 0.157 0.843 40 H 0.228 0.772 41 H 0.111 0.889 42 H 0.037 0.963 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.234 -3.683 9.678 18.420 hybrid contribution -0.548 -0.713 -0.975 1.326 sum 14.686 -4.396 8.703 17.628 Atomic orbital electron populations 1.21804 0.95941 1.01399 1.00258 1.20505 0.93136 0.93593 0.86990 0.95656 1.22046 0.94115 1.01394 0.98994 1.21676 0.97524 0.99750 0.96460 1.22179 0.76835 1.01311 0.98864 0.89645 1.45942 1.09082 1.25849 1.53182 1.17618 0.84688 0.82961 0.80469 1.90873 1.60805 1.42287 1.44434 1.22003 0.95841 0.90122 0.91836 1.22801 0.95590 0.99546 0.97655 1.22035 0.91355 0.95711 0.96150 1.20082 0.99482 0.78403 0.74644 1.93067 1.93014 1.46050 1.84703 1.93083 1.94118 1.96369 1.33072 1.67938 1.41696 1.02658 1.07771 1.25048 0.88177 0.93381 0.92370 1.68395 1.06953 1.27003 1.17242 1.21070 0.83802 0.96957 0.94022 1.44009 1.02512 1.64813 1.19246 1.19127 0.95061 1.38251 0.85923 0.91190 1.25092 0.97772 0.99235 0.97077 1.70001 1.24076 1.43595 1.16745 0.86341 0.79364 0.80039 0.81302 1.21427 1.21569 1.20354 0.92794 0.94323 0.91953 0.92530 0.92000 0.92921 0.92045 0.76068 0.81422 0.84328 0.77173 0.88877 0.96263 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.95 37.16 0.30 -2.22 16 2 C 0.16 3.30 3.50 -67.60 -0.24 3.07 16 3 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 4 C -0.13 -2.08 5.37 -26.62 -0.14 -2.22 16 5 C -0.12 -1.83 5.36 -26.69 -0.14 -1.97 16 6 C 0.11 2.15 2.60 -67.81 -0.18 1.97 16 7 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 8 N -0.69 -11.36 5.08 -54.44 -0.28 -11.64 16 9 C 0.56 9.85 7.80 -12.05 -0.09 9.75 16 10 O -0.51 -10.88 16.09 5.38 0.09 -10.79 16 11 C 0.15 2.16 6.79 -82.64 -0.56 1.60 16 12 C -0.13 -1.75 9.32 -38.90 -0.36 -2.11 16 13 C 0.10 1.06 6.31 -82.24 -0.52 0.54 16 14 C 0.33 2.92 5.58 36.00 0.20 3.12 16 15 F -0.19 -1.90 17.26 2.25 0.04 -1.86 16 16 F -0.19 -2.00 17.27 2.25 0.04 -1.96 16 17 N -0.49 -4.93 10.35 -10.81 -0.11 -5.04 16 18 C 0.30 2.83 12.28 -92.25 -1.13 1.70 16 19 N -0.48 -5.77 9.70 -11.14 -0.11 -5.88 16 20 C 0.17 4.02 4.86 -3.71 -0.02 4.00 16 21 N -0.58 -14.31 2.99 -164.77 -0.49 -14.80 16 22 C -0.25 -6.89 8.57 -15.06 -0.13 -7.02 16 23 H 0.07 1.85 6.24 -52.48 -0.33 1.52 16 24 C 0.01 0.21 4.94 -17.43 -0.09 0.12 16 25 N -0.90 -26.54 11.23 55.49 0.62 -25.92 16 26 Si 0.90 22.26 29.58 -169.99 -5.03 17.23 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 30 H 0.05 1.01 7.44 -51.93 -0.39 0.63 16 31 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.06 1.25 7.63 -51.93 -0.40 0.85 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.40 5.60 7.99 -40.82 -0.33 5.28 16 38 H 0.17 2.23 7.74 -52.49 -0.41 1.82 16 39 H 0.14 0.76 8.12 -51.93 -0.42 0.34 16 40 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.09 2.62 6.15 -51.93 -0.32 2.30 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -32.45 364.32 -8.34 -40.78 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.49 Total: 4.05 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: -3.10 Total: 10.33 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.36 Total: -63.28 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.08 Total: -3.81 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.45 -8.34 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071610009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.594 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds