Wall clock time and date at job start Sat Apr 11 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.58861 * 2 1 4 4 C 1.53199 * 109.58699 * 239.57102 * 2 1 3 5 5 C 1.53035 * 109.31100 * 185.57993 * 4 2 1 6 6 C 1.53035 * 109.53994 * 61.36858 * 5 4 2 7 7 H 1.09008 * 109.52674 * 178.66995 * 6 5 4 8 8 N 1.46500 * 109.50183 * 58.58586 * 6 5 4 9 9 C 1.34777 * 120.00235 * 155.16423 * 8 6 5 10 10 O 1.21279 * 120.00128 * 0.02562 * 9 8 6 11 11 C 1.50698 * 119.99774 * 179.97438 * 9 8 6 12 12 C 1.50694 * 109.47238 * 179.97438 * 11 9 8 13 13 C 1.35306 * 126.04816 * 99.71284 * 12 11 9 14 14 N 1.34940 * 107.77007 * 179.89897 * 13 12 11 15 15 C 1.46497 * 126.02713 * 180.17347 * 14 13 12 16 16 N 1.40083 * 107.94820 * 0.36895 * 14 13 12 17 17 C 1.30894 * 108.20070 * 359.77351 * 16 14 13 18 18 Cl 1.73604 * 125.91415 * 180.02562 * 17 16 14 19 19 C 1.53192 * 109.31102 * 298.62858 * 6 5 4 20 20 N 1.46925 * 109.58493 * 120.28362 * 2 1 3 21 21 C 1.36935 * 120.63065 * 353.41730 * 20 2 1 22 22 H 1.07995 * 120.00045 * 29.00046 * 21 20 2 23 23 C 1.38815 * 119.99901 * 208.99932 * 21 20 2 24 24 N 1.31623 * 120.00073 * 15.02969 * 23 21 20 25 25 Si 1.86796 * 120.00109 * 195.02865 * 23 21 20 26 26 H 1.48503 * 109.47320 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47245 * 120.00179 * 25 23 21 28 28 H 1.48498 * 109.47297 * 239.99918 * 25 23 21 29 29 H 1.08999 * 109.46735 * 299.71641 * 1 2 3 30 30 H 1.09001 * 109.47072 * 59.71880 * 1 2 3 31 31 H 1.08994 * 109.47148 * 179.71312 * 1 2 3 32 32 H 1.09001 * 109.49632 * 305.53259 * 4 2 1 33 33 H 1.08993 * 109.49455 * 65.62810 * 4 2 1 34 34 H 1.09003 * 109.46311 * 301.33985 * 5 4 2 35 35 H 1.09005 * 109.45673 * 181.38546 * 5 4 2 36 36 H 0.97001 * 119.99450 * 335.16226 * 8 6 5 37 37 H 1.09005 * 109.47213 * 59.99938 * 11 9 8 38 38 H 1.08996 * 109.47432 * 300.00255 * 11 9 8 39 39 H 1.08002 * 126.11499 * 0.03821 * 13 12 11 40 40 H 1.09005 * 109.47634 * 270.25172 * 15 14 13 41 41 H 1.09000 * 109.47500 * 30.25570 * 15 14 13 42 42 H 1.08999 * 109.47296 * 150.25458 * 15 14 13 43 43 H 1.09006 * 109.58528 * 174.41995 * 19 6 5 44 44 H 1.08994 * 109.59064 * 294.85139 * 19 6 5 45 45 H 0.96993 * 120.00081 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5675 -0.8495 -1.1690 6 6 3.9568 -1.6657 0.0655 7 1 5.0411 -1.7701 0.1062 8 7 3.3405 -2.9926 -0.0110 9 6 3.8952 -4.0321 0.6433 10 8 4.9043 -3.8691 1.2960 11 6 3.2608 -5.3968 0.5649 12 6 4.0701 -6.3744 1.3774 13 6 3.7832 -6.7982 2.6300 14 7 4.7466 -7.6670 3.0015 15 6 4.8250 -8.3698 4.2845 16 7 5.6609 -7.7751 1.9457 17 6 5.2550 -6.9999 0.9723 18 17 6.0483 -6.7853 -0.5569 19 6 3.4650 -0.9453 1.3249 20 7 2.0225 -0.6980 1.1954 21 6 1.1536 -1.1107 2.1699 22 1 0.1359 -1.3656 1.9134 23 6 1.5808 -1.2016 3.4876 24 7 2.7038 -0.6228 3.8567 25 14 0.5619 -2.1452 4.7368 26 1 -0.6463 -2.6984 4.0738 27 1 1.3712 -3.2571 5.2973 28 1 0.1510 -1.2309 5.8325 29 1 -0.3633 0.5094 0.8925 30 1 -0.3633 0.5182 -0.8875 31 1 -0.3633 -1.0276 -0.0051 32 1 1.6029 -1.7270 -1.2892 33 1 1.7661 -0.1696 -2.1366 34 1 4.0062 0.1459 -1.0995 35 1 3.9378 -1.3475 -2.0652 36 1 2.5331 -3.1229 -0.5327 37 1 3.2318 -5.7249 -0.4741 38 1 2.2457 -5.3488 0.9592 39 1 2.9338 -6.4969 3.2251 40 1 5.3893 -7.7663 4.9956 41 1 3.8189 -8.5379 4.6688 42 1 5.3250 -9.3280 4.1440 43 1 3.6518 -1.5691 2.1991 44 1 3.9903 0.0037 1.4316 45 1 3.0021 -0.6859 4.7774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071825205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:38 Heat of formation + Delta-G solvation = 58.715855 kcal Electronic energy + Delta-G solvation = -28586.246399 eV Core-core repulsion = 24667.165977 eV Total energy + Delta-G solvation = -3919.080421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.30087 -39.25444 -37.45985 -36.65456 -34.02180 -33.46208 -32.68729 -31.86534 -30.52124 -29.84170 -28.24292 -26.30061 -25.55983 -24.82376 -22.13273 -21.31510 -21.23838 -20.38647 -19.86287 -18.64587 -17.05906 -16.70352 -16.17029 -15.56891 -15.33851 -15.08315 -14.79590 -14.54312 -13.99847 -13.82503 -13.52044 -13.43421 -13.39988 -13.18359 -12.85351 -12.78784 -12.52341 -12.30754 -12.01511 -11.61384 -11.56466 -11.40185 -11.17115 -11.14018 -10.92818 -10.82864 -10.72049 -10.45518 -10.35829 -10.29567 -9.94008 -9.48852 -9.41030 -9.27538 -9.13701 -8.44986 -8.35533 -8.20402 -6.56882 -5.72584 -3.16535 1.54063 1.77244 2.55299 2.89038 3.33958 3.39464 3.41170 3.43823 4.00693 4.46868 4.49777 4.79365 5.00140 5.10162 5.24887 5.30460 5.35146 5.39623 5.44694 5.55408 5.58277 5.62939 5.65315 5.73156 6.00746 6.06968 6.16640 6.19844 6.27481 6.36841 6.38641 6.48919 6.59750 6.66142 6.77308 6.87684 6.97886 7.07833 7.18405 7.46168 7.49565 7.76332 7.86008 8.28301 8.51790 9.00991 9.25935 9.90889 10.47487 11.35066 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.004450 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.352000 B = 6290.290795 C = 8115.862891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.023 0.977 4 C -0.129 4.129 5 C -0.118 4.118 6 C 0.120 3.880 7 H 0.073 0.927 8 N -0.703 5.703 9 C 0.514 3.486 10 O -0.537 6.537 11 C -0.065 4.065 12 C -0.196 4.196 13 C 0.080 3.920 14 N -0.365 5.365 15 C 0.104 3.896 16 N -0.288 5.288 17 C 0.143 3.857 18 Cl 0.002 6.998 19 C 0.163 3.837 20 N -0.583 5.583 21 C -0.246 4.246 22 H 0.068 0.932 23 C 0.004 3.996 24 N -0.898 5.898 25 Si 0.894 3.106 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.292 1.292 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.393 0.607 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.182 0.818 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.022 0.978 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 -11.935 -7.324 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.014 3.986 7 H 0.091 0.909 8 N -0.354 5.354 9 C 0.299 3.701 10 O -0.414 6.414 11 C -0.106 4.106 12 C -0.208 4.208 13 C -0.066 4.066 14 N -0.149 5.149 15 C -0.037 4.037 16 N -0.114 5.114 17 C -0.048 4.048 18 Cl 0.029 6.971 19 C 0.036 3.964 20 N -0.306 5.306 21 C -0.376 4.376 22 H 0.086 0.914 23 C -0.195 4.195 24 N -0.543 5.543 25 Si 0.725 3.275 26 H -0.203 1.203 27 H -0.218 1.218 28 H -0.219 1.219 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.227 0.773 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.199 0.801 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.115 0.885 44 H 0.040 0.960 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.801 -12.671 -6.274 14.254 hybrid contribution -1.359 0.175 0.271 1.397 sum 0.442 -12.496 -6.003 13.870 Atomic orbital electron populations 1.21795 0.96199 1.01160 1.00133 1.20457 0.92802 0.93623 0.87287 0.95901 1.22051 0.95231 1.00651 0.98926 1.21683 0.96913 1.00087 0.96963 1.21702 0.96888 0.82107 0.97868 0.90899 1.45809 1.29554 1.08581 1.51498 1.20281 0.84696 0.85724 0.79356 1.90683 1.25256 1.84971 1.40494 1.19936 0.99230 0.90950 1.00525 1.19216 0.98898 1.06285 0.96398 1.22354 0.95452 0.93298 0.95517 1.48115 1.18409 1.35178 1.13174 1.21918 1.04088 0.97624 0.80066 1.77269 1.14156 1.24349 0.95579 1.22388 0.93914 0.98441 0.90068 1.98370 1.79743 1.95931 1.23016 1.21182 0.83540 0.96934 0.94753 1.44056 1.02775 1.64881 1.18898 1.19121 0.94585 1.37763 0.86151 0.91427 1.25053 0.97637 0.99836 0.96934 1.69998 1.23159 1.44479 1.16649 0.86349 0.79551 0.79751 0.81889 1.20335 1.21824 1.21872 0.92119 0.94486 0.92962 0.92585 0.93020 0.91363 0.93096 0.77254 0.88645 0.87989 0.80051 0.90393 0.89065 0.89191 0.88456 0.96049 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.94 37.16 0.30 -2.09 16 2 C 0.17 3.19 3.50 -67.60 -0.24 2.95 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -2.01 5.21 -26.61 -0.14 -2.15 16 5 C -0.12 -1.87 5.58 -26.70 -0.15 -2.01 16 6 C 0.12 2.29 2.81 -67.81 -0.19 2.10 16 7 H 0.07 1.47 7.58 -51.92 -0.39 1.07 16 8 N -0.70 -12.22 4.92 -53.69 -0.26 -12.49 16 9 C 0.51 9.45 7.79 -10.99 -0.09 9.37 16 10 O -0.54 -12.17 15.70 5.56 0.09 -12.08 16 11 C -0.07 -0.93 6.04 -29.04 -0.18 -1.11 16 12 C -0.20 -3.03 4.60 -105.02 -0.48 -3.51 16 13 C 0.08 1.11 11.40 -17.23 -0.20 0.92 16 14 N -0.37 -4.97 4.01 -68.17 -0.27 -5.24 16 15 C 0.10 0.88 11.47 59.85 0.69 1.57 16 16 N -0.29 -4.65 12.58 32.95 0.41 -4.24 16 17 C 0.14 2.32 7.84 -17.30 -0.14 2.18 16 18 Cl 0.00 0.02 29.16 -51.86 -1.51 -1.49 16 19 C 0.16 3.85 4.89 -3.71 -0.02 3.83 16 20 N -0.58 -13.55 2.91 -164.77 -0.48 -14.03 16 21 C -0.25 -6.31 8.60 -15.06 -0.13 -6.44 16 22 H 0.07 1.69 6.21 -52.49 -0.33 1.36 16 23 C 0.00 0.11 4.96 -17.43 -0.09 0.03 16 24 N -0.90 -26.08 11.14 55.49 0.62 -25.47 16 25 Si 0.89 21.15 29.58 -169.99 -5.03 16.12 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H 0.06 1.18 7.62 -51.93 -0.40 0.78 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.91 7.44 -51.93 -0.39 0.53 16 32 H 0.06 0.84 6.40 -51.93 -0.33 0.51 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.39 5.97 6.77 -40.82 -0.28 5.70 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.18 2.07 8.06 -52.49 -0.42 1.64 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.10 2.72 6.06 -51.93 -0.31 2.41 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -33.80 377.94 -8.42 -42.21 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.63 Total: 5.37 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -1.04 Total: 5.63 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.02 Total: -61.46 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -1.51 Total: -1.49 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.80 -8.42 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071825205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.929 kcal (2) G-P(sol) polarization free energy of solvation -33.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds