Wall clock time and date at job start Sat Apr 11 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.58861 * 2 1 4 4 C 1.53199 * 109.58699 * 239.57102 * 2 1 3 5 5 C 1.53035 * 109.31100 * 185.57993 * 4 2 1 6 6 C 1.53035 * 109.53994 * 61.36858 * 5 4 2 7 7 H 1.09008 * 109.52674 * 178.66995 * 6 5 4 8 8 N 1.46500 * 109.50183 * 58.58586 * 6 5 4 9 9 C 1.34777 * 120.00235 * 155.16423 * 8 6 5 10 10 O 1.21279 * 120.00128 * 0.02562 * 9 8 6 11 11 C 1.50698 * 119.99774 * 179.97438 * 9 8 6 12 12 C 1.50694 * 109.47238 * 179.97438 * 11 9 8 13 13 C 1.35306 * 126.04816 * 99.71284 * 12 11 9 14 14 N 1.34940 * 107.77007 * 179.89897 * 13 12 11 15 15 C 1.46497 * 126.02713 * 180.17347 * 14 13 12 16 16 N 1.40083 * 107.94820 * 0.36895 * 14 13 12 17 17 C 1.30894 * 108.20070 * 359.77351 * 16 14 13 18 18 Cl 1.73604 * 125.91415 * 180.02562 * 17 16 14 19 19 C 1.53192 * 109.31102 * 298.62858 * 6 5 4 20 20 N 1.46925 * 109.58493 * 120.28362 * 2 1 3 21 21 C 1.36935 * 120.63065 * 353.41730 * 20 2 1 22 22 H 1.07995 * 120.00045 * 29.00046 * 21 20 2 23 23 C 1.38815 * 119.99901 * 208.99932 * 21 20 2 24 24 N 1.31623 * 120.00073 * 15.02969 * 23 21 20 25 25 Si 1.86796 * 120.00109 * 195.02865 * 23 21 20 26 26 H 1.48503 * 109.47320 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47245 * 120.00179 * 25 23 21 28 28 H 1.48498 * 109.47297 * 239.99918 * 25 23 21 29 29 H 1.08999 * 109.46735 * 299.71641 * 1 2 3 30 30 H 1.09001 * 109.47072 * 59.71880 * 1 2 3 31 31 H 1.08994 * 109.47148 * 179.71312 * 1 2 3 32 32 H 1.09001 * 109.49632 * 305.53259 * 4 2 1 33 33 H 1.08993 * 109.49455 * 65.62810 * 4 2 1 34 34 H 1.09003 * 109.46311 * 301.33985 * 5 4 2 35 35 H 1.09005 * 109.45673 * 181.38546 * 5 4 2 36 36 H 0.97001 * 119.99450 * 335.16226 * 8 6 5 37 37 H 1.09005 * 109.47213 * 59.99938 * 11 9 8 38 38 H 1.08996 * 109.47432 * 300.00255 * 11 9 8 39 39 H 1.08002 * 126.11499 * 0.03821 * 13 12 11 40 40 H 1.09005 * 109.47634 * 270.25172 * 15 14 13 41 41 H 1.09000 * 109.47500 * 30.25570 * 15 14 13 42 42 H 1.08999 * 109.47296 * 150.25458 * 15 14 13 43 43 H 1.09006 * 109.58528 * 174.41995 * 19 6 5 44 44 H 1.08994 * 109.59064 * 294.85139 * 19 6 5 45 45 H 0.96993 * 120.00081 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5675 -0.8495 -1.1690 6 6 3.9568 -1.6657 0.0655 7 1 5.0411 -1.7701 0.1062 8 7 3.3405 -2.9926 -0.0110 9 6 3.8952 -4.0321 0.6433 10 8 4.9043 -3.8691 1.2960 11 6 3.2608 -5.3968 0.5649 12 6 4.0701 -6.3744 1.3774 13 6 3.7832 -6.7982 2.6300 14 7 4.7466 -7.6670 3.0015 15 6 4.8250 -8.3698 4.2845 16 7 5.6609 -7.7751 1.9457 17 6 5.2550 -6.9999 0.9723 18 17 6.0483 -6.7853 -0.5569 19 6 3.4650 -0.9453 1.3249 20 7 2.0225 -0.6980 1.1954 21 6 1.1536 -1.1107 2.1699 22 1 0.1359 -1.3656 1.9134 23 6 1.5808 -1.2016 3.4876 24 7 2.7038 -0.6228 3.8567 25 14 0.5619 -2.1452 4.7368 26 1 -0.6463 -2.6984 4.0738 27 1 1.3712 -3.2571 5.2973 28 1 0.1510 -1.2309 5.8325 29 1 -0.3633 0.5094 0.8925 30 1 -0.3633 0.5182 -0.8875 31 1 -0.3633 -1.0276 -0.0051 32 1 1.6029 -1.7270 -1.2892 33 1 1.7661 -0.1696 -2.1366 34 1 4.0062 0.1459 -1.0995 35 1 3.9378 -1.3475 -2.0652 36 1 2.5331 -3.1229 -0.5327 37 1 3.2318 -5.7249 -0.4741 38 1 2.2457 -5.3488 0.9592 39 1 2.9338 -6.4969 3.2251 40 1 5.3893 -7.7663 4.9956 41 1 3.8189 -8.5379 4.6688 42 1 5.3250 -9.3280 4.1440 43 1 3.6518 -1.5691 2.1991 44 1 3.9903 0.0037 1.4316 45 1 3.0021 -0.6859 4.7774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071825205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:37 Heat of formation + Delta-G solvation = 36.167485 kcal Electronic energy + Delta-G solvation = -28587.224169 eV Core-core repulsion = 24667.165977 eV Total energy + Delta-G solvation = -3920.058192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.37690 -40.75138 -39.01965 -37.77398 -35.65449 -34.50049 -34.42105 -33.04318 -31.94045 -31.64091 -29.28137 -27.79482 -26.93649 -26.33009 -23.83209 -22.61475 -22.29786 -21.90306 -21.11055 -20.26787 -18.29418 -18.14845 -17.74336 -17.08598 -16.52049 -16.42912 -16.04325 -15.98856 -15.64879 -15.38333 -14.92490 -14.76298 -14.50377 -14.41272 -14.26607 -13.99184 -13.89493 -13.60093 -13.28335 -12.96118 -12.84345 -12.73402 -12.60529 -12.57159 -12.52402 -12.44830 -12.34566 -12.03453 -11.97605 -11.57573 -11.51838 -11.14659 -10.98592 -10.71703 -10.46912 -10.30800 -9.77268 -9.45873 -8.51223 -7.74582 -5.20586 0.47314 0.70057 1.40302 1.45686 1.47742 1.57781 1.92985 1.98153 2.56636 2.65560 3.41020 3.53767 3.69642 3.85774 4.04272 4.10764 4.17069 4.24104 4.34062 4.37662 4.39132 4.55326 4.56984 4.64483 4.70020 4.71971 4.80218 4.89235 4.96130 5.02699 5.10662 5.15127 5.17159 5.22455 5.33101 5.39594 5.62102 5.68651 5.77721 5.82412 5.89257 5.93117 6.37134 6.50821 6.90666 7.24976 7.62284 7.99581 8.51360 9.30784 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.004450 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.352000 B = 6290.290795 C = 8115.862891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.007 0.993 4 C -0.117 4.117 5 C -0.111 4.111 6 C 0.131 3.869 7 H 0.055 0.945 8 N -0.694 5.694 9 C 0.508 3.492 10 O -0.587 6.587 11 C -0.055 4.055 12 C -0.219 4.219 13 C 0.078 3.922 14 N -0.363 5.363 15 C 0.092 3.908 16 N -0.317 5.317 17 C 0.126 3.874 18 Cl 0.004 6.996 19 C 0.174 3.826 20 N -0.593 5.593 21 C -0.232 4.232 22 H 0.080 0.920 23 C -0.059 4.059 24 N -0.941 5.941 25 Si 0.953 3.047 26 H -0.254 1.254 27 H -0.296 1.296 28 H -0.303 1.303 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.408 0.592 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.207 0.793 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.050 0.950 44 H -0.014 1.014 45 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 -13.315 -9.370 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.025 0.975 4 C -0.156 4.156 5 C -0.149 4.149 6 C 0.024 3.976 7 H 0.074 0.926 8 N -0.346 5.346 9 C 0.295 3.705 10 O -0.467 6.467 11 C -0.096 4.096 12 C -0.232 4.232 13 C -0.069 4.069 14 N -0.146 5.146 15 C -0.047 4.047 16 N -0.144 5.144 17 C -0.065 4.065 18 Cl 0.032 6.968 19 C 0.047 3.953 20 N -0.317 5.317 21 C -0.362 4.362 22 H 0.098 0.902 23 C -0.254 4.254 24 N -0.589 5.589 25 Si 0.782 3.218 26 H -0.178 1.178 27 H -0.224 1.224 28 H -0.231 1.231 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.245 0.755 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.224 0.776 40 H 0.098 0.902 41 H 0.142 0.858 42 H 0.120 0.880 43 H 0.069 0.931 44 H 0.004 0.996 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.679 -14.072 -8.378 16.392 hybrid contribution -0.593 0.670 0.924 1.286 sum -1.273 -13.403 -7.454 15.389 Atomic orbital electron populations 1.21718 0.94533 1.01580 1.00662 1.20768 0.94258 0.92972 0.87244 0.97514 1.21936 0.94475 1.01299 0.97867 1.21647 0.97483 0.99584 0.96147 1.21347 0.95893 0.83102 0.97241 0.92647 1.45711 1.29907 1.07644 1.51304 1.21083 0.84050 0.87234 0.78090 1.90665 1.27601 1.85902 1.42530 1.19951 0.99423 0.87886 1.02316 1.19473 0.99260 1.07061 0.97376 1.22828 0.95973 0.92746 0.95343 1.48549 1.17487 1.34861 1.13698 1.22338 1.06443 0.97753 0.78125 1.77178 1.15481 1.25214 0.96504 1.22618 0.94451 0.98926 0.90461 1.98355 1.79747 1.95945 1.22749 1.20823 0.84114 0.94846 0.95490 1.44274 1.02180 1.65476 1.19791 1.19497 0.95020 1.35341 0.86355 0.90221 1.25802 0.98857 1.01610 0.99083 1.70206 1.25478 1.47116 1.16110 0.85402 0.78847 0.78086 0.79447 1.17815 1.22382 1.23121 0.94764 0.90826 0.92510 0.91221 0.89483 0.91632 0.89792 0.75546 0.85909 0.85873 0.77621 0.90158 0.85829 0.87993 0.93141 0.99635 0.95119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 7.94 71.98 0.57 -3.53 16 2 C 0.15 5.61 3.50 44.98 0.16 5.77 16 3 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 4 C -0.12 -3.17 5.21 30.67 0.16 -3.01 16 5 C -0.11 -3.20 5.58 30.62 0.17 -3.03 16 6 C 0.13 4.96 2.81 45.07 0.13 5.09 16 7 H 0.06 2.30 7.58 -2.38 -0.02 2.28 16 8 N -0.69 -23.09 4.92 -442.17 -2.17 -25.26 16 9 C 0.51 18.34 7.79 87.66 0.68 19.02 16 10 O -0.59 -27.24 15.70 -3.03 -0.05 -27.29 16 11 C -0.06 -1.46 6.04 29.10 0.18 -1.29 16 12 C -0.22 -6.54 4.60 -20.12 -0.09 -6.63 16 13 C 0.08 2.07 11.40 83.54 0.95 3.02 16 14 N -0.36 -9.44 4.01 -369.58 -1.48 -10.92 16 15 C 0.09 1.40 11.47 127.77 1.47 2.87 16 16 N -0.32 -10.16 12.58 -49.68 -0.62 -10.79 16 17 C 0.13 4.03 7.84 85.25 0.67 4.70 16 18 Cl 0.00 0.12 29.16 -2.72 -0.08 0.04 16 19 C 0.17 8.57 4.89 86.36 0.42 8.99 16 20 N -0.59 -27.56 2.91 -675.21 -1.96 -29.52 16 21 C -0.23 -11.78 8.60 84.03 0.72 -11.06 16 22 H 0.08 3.83 6.21 -2.91 -0.02 3.81 16 23 C -0.06 -3.26 4.96 84.86 0.42 -2.84 16 24 N -0.94 -57.31 11.14 21.65 0.24 -57.06 16 25 Si 0.95 43.83 29.58 68.60 2.03 45.86 16 26 H -0.25 -10.57 7.11 99.48 0.71 -9.87 16 27 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 28 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 29 H 0.03 1.26 7.62 -2.39 -0.02 1.24 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 1.77 7.44 -2.39 -0.02 1.75 16 32 H 0.07 1.74 6.40 -2.39 -0.02 1.73 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.41 11.06 6.77 -92.71 -0.63 10.43 16 37 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 38 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.21 4.20 8.06 -2.91 -0.02 4.18 16 40 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.05 2.97 6.06 -2.38 -0.01 2.96 16 44 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 45 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -78.52 377.94 2.88 -75.63 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.38 Total: 21.25 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 6.60 Total: 18.06 kcal Atomic # 7 Polarization: -127.55 SS G_CDS: -6.00 Total: -133.56 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.05 Total: -27.29 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -0.08 Total: 0.04 kcal Total: -78.52 2.88 -75.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071825205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.799 kcal (2) G-P(sol) polarization free energy of solvation -78.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds