Wall clock time and date at job start Sat Apr 11 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70342 * 2 1 4 4 C 1.53193 * 109.58413 * 239.65257 * 2 1 3 5 5 C 1.53045 * 109.31326 * 185.58005 * 4 2 1 6 6 C 1.53040 * 109.53980 * 61.35870 * 5 4 2 7 7 H 1.09000 * 109.49648 * 58.58669 * 6 5 4 8 8 N 1.46499 * 109.49758 * 178.68559 * 6 5 4 9 9 C 1.34768 * 119.99967 * 205.00027 * 8 6 5 10 10 O 1.21286 * 120.00379 * 359.97438 * 9 8 6 11 11 C 1.50705 * 120.00206 * 180.02562 * 9 8 6 12 12 C 1.50691 * 109.47613 * 180.02562 * 11 9 8 13 13 C 1.35311 * 126.05071 * 99.99395 * 12 11 9 14 14 N 1.34944 * 107.76888 * 179.97438 * 13 12 11 15 15 C 1.46500 * 126.02699 * 179.97438 * 14 13 12 16 16 N 1.40085 * 107.94707 * 359.97438 * 14 13 12 17 17 C 1.30898 * 108.20480 * 359.74642 * 16 14 13 18 18 Cl 1.73598 * 125.91299 * 180.23891 * 17 16 14 19 19 C 1.53195 * 109.31143 * 298.64018 * 6 5 4 20 20 N 1.46922 * 108.77740 * 54.63568 * 19 6 5 21 21 C 1.36936 * 120.63068 * 126.41221 * 20 19 6 22 22 H 1.07993 * 120.00038 * 209.00557 * 21 20 19 23 23 C 1.38812 * 119.99785 * 29.01081 * 21 20 19 24 24 N 1.31617 * 120.00378 * 15.01823 * 23 21 20 25 25 Si 1.86807 * 119.99569 * 195.01873 * 23 21 20 26 26 H 1.48498 * 109.47223 * 60.00170 * 25 23 21 27 27 H 1.48507 * 109.46987 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.47060 * 299.99503 * 25 23 21 29 29 H 1.08994 * 109.47515 * 180.35334 * 1 2 3 30 30 H 1.09005 * 109.46837 * 300.35122 * 1 2 3 31 31 H 1.09001 * 109.47185 * 60.35084 * 1 2 3 32 32 H 1.08995 * 109.50503 * 65.62442 * 4 2 1 33 33 H 1.09007 * 109.49433 * 305.52468 * 4 2 1 34 34 H 1.08997 * 109.45966 * 181.38324 * 5 4 2 35 35 H 1.09003 * 109.45560 * 301.34144 * 5 4 2 36 36 H 0.97007 * 119.99755 * 25.00765 * 8 6 5 37 37 H 1.09001 * 109.46809 * 300.00454 * 11 9 8 38 38 H 1.09001 * 109.46989 * 59.99990 * 11 9 8 39 39 H 1.08000 * 126.11380 * 359.96482 * 13 12 11 40 40 H 1.08996 * 109.47160 * 89.99935 * 15 14 13 41 41 H 1.09003 * 109.46797 * 209.99833 * 15 14 13 42 42 H 1.09004 * 109.46784 * 329.99651 * 15 14 13 43 43 H 1.09005 * 109.58411 * 174.42169 * 19 6 5 44 44 H 1.08999 * 109.58420 * 294.69924 * 19 6 5 45 45 H 0.96999 * 120.00020 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7292 -1.2455 5 6 3.5675 -0.8479 -1.1703 6 6 3.9569 -1.6657 0.0632 7 1 3.4982 -2.6528 0.0050 8 7 5.4142 -1.8054 0.1172 9 6 5.9676 -2.8482 0.7672 10 8 5.2592 -3.6708 1.3080 11 6 7.4668 -2.9916 0.8233 12 6 7.8242 -4.2311 1.6022 13 6 8.1762 -5.4275 1.0773 14 7 8.4175 -6.2718 2.1020 15 6 8.8269 -7.6736 1.9853 16 7 8.2076 -5.5714 3.2969 17 6 7.8575 -4.3464 2.9968 18 17 7.4927 -3.0846 4.1319 19 6 3.4650 -0.9470 1.3235 20 7 2.0225 -0.6996 1.1944 21 6 1.1538 -1.1129 2.1688 22 1 0.1360 -1.3673 1.9124 23 6 1.5813 -1.2047 3.4863 24 7 2.7046 -0.6266 3.8555 25 14 0.5623 -2.1489 4.7352 26 1 0.4326 -3.5629 4.3008 27 1 1.2314 -2.0980 6.0600 28 1 -0.7868 -1.5366 4.8377 29 1 -0.3634 -1.0276 0.0063 30 1 -0.3633 0.5193 0.8869 31 1 -0.3633 0.5084 -0.8931 32 1 1.7660 -0.1667 -2.1369 33 1 1.6029 -1.7252 -1.2915 34 1 3.9377 -1.3447 -2.0671 35 1 4.0061 0.1474 -1.0994 36 1 5.9809 -1.1471 -0.3149 37 1 7.8621 -3.0726 -0.1893 38 1 7.8973 -2.1178 1.3125 39 1 8.2505 -5.6644 0.0262 40 1 9.9149 -7.7335 1.9611 41 1 8.4510 -8.2342 2.8413 42 1 8.4191 -8.0959 1.0669 43 1 3.6518 -1.5719 2.1969 44 1 3.9922 0.0007 1.4329 45 1 3.0035 -0.6911 4.7761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071825206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:40 Heat of formation + Delta-G solvation = 58.230623 kcal Electronic energy + Delta-G solvation = -28039.732582 eV Core-core repulsion = 24120.631119 eV Total energy + Delta-G solvation = -3919.101463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.36586 -39.23166 -37.49847 -36.53182 -34.27929 -33.54949 -32.73268 -31.94574 -30.55098 -29.75602 -28.36803 -26.26739 -25.46606 -24.66994 -22.19820 -21.32878 -21.21530 -20.31672 -19.75774 -19.11801 -17.09911 -16.61580 -16.34264 -15.59197 -15.50394 -15.03657 -15.01245 -14.54244 -13.86791 -13.73437 -13.63843 -13.47596 -13.38692 -13.28800 -13.01876 -12.66638 -12.55858 -12.28723 -11.85543 -11.76009 -11.53004 -11.38429 -11.30668 -11.05608 -10.81176 -10.62771 -10.44070 -10.41688 -10.33515 -10.20088 -9.89489 -9.65302 -9.36852 -9.32401 -9.18263 -8.43973 -8.39157 -8.31524 -6.52663 -5.65089 -3.09569 1.58884 1.70877 2.49155 2.87202 3.21688 3.48166 3.55184 3.56787 3.79919 4.37525 4.61483 4.63495 4.88729 4.98415 5.11403 5.16193 5.32246 5.42375 5.44688 5.50207 5.56620 5.60166 5.65883 5.76274 5.91066 6.04187 6.16839 6.17455 6.32918 6.38125 6.44832 6.51589 6.59688 6.68896 6.79961 6.83379 7.08803 7.10842 7.18737 7.41658 7.43237 7.86245 7.94421 8.09520 8.59321 8.84618 9.33754 9.98033 10.52965 11.42617 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.003781 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.410277 B = 7402.696270 C = 8787.352333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.115 4.115 6 C 0.118 3.882 7 H 0.079 0.921 8 N -0.724 5.724 9 C 0.508 3.492 10 O -0.522 6.522 11 C -0.064 4.064 12 C -0.198 4.198 13 C 0.073 3.927 14 N -0.368 5.368 15 C 0.105 3.895 16 N -0.285 5.285 17 C 0.143 3.857 18 Cl 0.016 6.984 19 C 0.168 3.832 20 N -0.583 5.583 21 C -0.255 4.255 22 H 0.069 0.931 23 C 0.009 3.991 24 N -0.898 5.898 25 Si 0.898 3.102 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.284 1.284 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.391 0.609 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.180 0.820 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.015 0.985 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.540 -6.811 -11.180 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.041 0.959 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.013 3.987 7 H 0.097 0.903 8 N -0.375 5.375 9 C 0.293 3.707 10 O -0.397 6.397 11 C -0.105 4.105 12 C -0.211 4.211 13 C -0.073 4.073 14 N -0.151 5.151 15 C -0.036 4.036 16 N -0.110 5.110 17 C -0.049 4.049 18 Cl 0.044 6.956 19 C 0.042 3.958 20 N -0.307 5.307 21 C -0.384 4.384 22 H 0.086 0.914 23 C -0.190 4.190 24 N -0.542 5.542 25 Si 0.728 3.272 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.210 1.210 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.223 0.777 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.197 0.803 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.033 0.967 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.310 -8.289 -9.563 19.104 hybrid contribution -0.343 0.471 -0.035 0.584 sum 13.968 -7.817 -9.598 18.664 Atomic orbital electron populations 1.21799 0.96094 1.01386 1.00091 1.20474 0.92982 0.93523 0.87157 0.95851 1.22048 0.94465 1.01231 0.98861 1.21674 0.97268 0.99636 0.96793 1.21923 0.78152 1.00632 0.98020 0.90280 1.46061 1.08378 1.26865 1.56236 1.20423 0.89962 0.81586 0.78715 1.90753 1.63298 1.41961 1.43651 1.19949 0.93864 0.95999 1.00722 1.19225 1.13848 0.96706 0.91289 1.22225 1.00816 0.89446 0.94831 1.48138 1.53368 1.10475 1.03109 1.21893 1.00933 0.76355 1.04430 1.77352 1.24187 1.04261 1.05240 1.22577 1.00910 0.90707 0.90679 1.98432 1.92508 1.45055 1.59587 1.21084 0.83313 0.96869 0.94583 1.44015 1.02734 1.64736 1.19211 1.19073 0.94674 1.38497 0.86166 0.91370 1.25035 0.97654 0.99399 0.96949 1.69973 1.23147 1.44203 1.16874 0.86446 0.79472 0.80443 0.80851 1.20997 1.21668 1.20990 0.92818 0.92049 0.94420 0.92823 0.92179 0.93242 0.92357 0.77662 0.88419 0.88125 0.80271 0.90600 0.89094 0.89173 0.88593 0.96685 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 7.94 37.16 0.30 -2.31 16 2 C 0.17 3.43 3.50 -67.60 -0.24 3.20 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.17 5.37 -26.61 -0.14 -2.31 16 5 C -0.12 -1.86 5.35 -26.69 -0.14 -2.00 16 6 C 0.12 2.31 2.60 -67.81 -0.18 2.13 16 7 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 8 N -0.72 -11.54 5.08 -53.69 -0.27 -11.81 16 9 C 0.51 8.71 7.79 -10.99 -0.09 8.62 16 10 O -0.52 -11.73 15.70 5.55 0.09 -11.64 16 11 C -0.06 -0.79 6.04 -29.04 -0.18 -0.97 16 12 C -0.20 -2.81 4.60 -105.02 -0.48 -3.29 16 13 C 0.07 0.83 11.40 -17.23 -0.20 0.63 16 14 N -0.37 -4.49 4.01 -68.16 -0.27 -4.76 16 15 C 0.10 0.72 11.47 59.85 0.69 1.41 16 16 N -0.29 -4.61 12.58 32.95 0.41 -4.19 16 17 C 0.14 2.38 7.84 -17.30 -0.14 2.24 16 18 Cl 0.02 0.28 29.16 -51.86 -1.51 -1.23 16 19 C 0.17 4.13 4.86 -3.71 -0.02 4.12 16 20 N -0.58 -14.78 2.99 -164.78 -0.49 -15.27 16 21 C -0.25 -7.12 8.61 -15.06 -0.13 -7.25 16 22 H 0.07 1.86 6.20 -52.49 -0.33 1.53 16 23 C 0.01 0.25 4.96 -17.43 -0.09 0.17 16 24 N -0.90 -27.11 11.14 55.49 0.62 -26.49 16 25 Si 0.90 23.07 29.58 -169.99 -5.03 18.05 16 26 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 28 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 29 H 0.05 1.05 7.40 -51.93 -0.38 0.66 16 30 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.39 4.72 8.60 -40.82 -0.35 4.36 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.10 2.80 6.06 -51.93 -0.31 2.49 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -36.94 381.46 -8.54 -45.48 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.80 Total: 1.74 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.03 Total: 4.38 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.01 Total: -62.52 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.03 Total: 18.05 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.51 Total: -1.23 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.94 -8.54 -45.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071825206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.709 kcal (2) G-P(sol) polarization free energy of solvation -36.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds