Wall clock time and date at job start Sat Apr 11 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70342 * 2 1 4 4 C 1.53193 * 109.58413 * 239.65257 * 2 1 3 5 5 C 1.53045 * 109.31326 * 185.58005 * 4 2 1 6 6 C 1.53040 * 109.53980 * 61.35870 * 5 4 2 7 7 H 1.09000 * 109.49648 * 58.58669 * 6 5 4 8 8 N 1.46499 * 109.49758 * 178.68559 * 6 5 4 9 9 C 1.34768 * 119.99967 * 205.00027 * 8 6 5 10 10 O 1.21286 * 120.00379 * 359.97438 * 9 8 6 11 11 C 1.50705 * 120.00206 * 180.02562 * 9 8 6 12 12 C 1.50691 * 109.47613 * 180.02562 * 11 9 8 13 13 C 1.35311 * 126.05071 * 99.99395 * 12 11 9 14 14 N 1.34944 * 107.76888 * 179.97438 * 13 12 11 15 15 C 1.46500 * 126.02699 * 179.97438 * 14 13 12 16 16 N 1.40085 * 107.94707 * 359.97438 * 14 13 12 17 17 C 1.30898 * 108.20480 * 359.74642 * 16 14 13 18 18 Cl 1.73598 * 125.91299 * 180.23891 * 17 16 14 19 19 C 1.53195 * 109.31143 * 298.64018 * 6 5 4 20 20 N 1.46922 * 108.77740 * 54.63568 * 19 6 5 21 21 C 1.36936 * 120.63068 * 126.41221 * 20 19 6 22 22 H 1.07993 * 120.00038 * 209.00557 * 21 20 19 23 23 C 1.38812 * 119.99785 * 29.01081 * 21 20 19 24 24 N 1.31617 * 120.00378 * 15.01823 * 23 21 20 25 25 Si 1.86807 * 119.99569 * 195.01873 * 23 21 20 26 26 H 1.48498 * 109.47223 * 60.00170 * 25 23 21 27 27 H 1.48507 * 109.46987 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.47060 * 299.99503 * 25 23 21 29 29 H 1.08994 * 109.47515 * 180.35334 * 1 2 3 30 30 H 1.09005 * 109.46837 * 300.35122 * 1 2 3 31 31 H 1.09001 * 109.47185 * 60.35084 * 1 2 3 32 32 H 1.08995 * 109.50503 * 65.62442 * 4 2 1 33 33 H 1.09007 * 109.49433 * 305.52468 * 4 2 1 34 34 H 1.08997 * 109.45966 * 181.38324 * 5 4 2 35 35 H 1.09003 * 109.45560 * 301.34144 * 5 4 2 36 36 H 0.97007 * 119.99755 * 25.00765 * 8 6 5 37 37 H 1.09001 * 109.46809 * 300.00454 * 11 9 8 38 38 H 1.09001 * 109.46989 * 59.99990 * 11 9 8 39 39 H 1.08000 * 126.11380 * 359.96482 * 13 12 11 40 40 H 1.08996 * 109.47160 * 89.99935 * 15 14 13 41 41 H 1.09003 * 109.46797 * 209.99833 * 15 14 13 42 42 H 1.09004 * 109.46784 * 329.99651 * 15 14 13 43 43 H 1.09005 * 109.58411 * 174.42169 * 19 6 5 44 44 H 1.08999 * 109.58420 * 294.69924 * 19 6 5 45 45 H 0.96999 * 120.00020 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7292 -1.2455 5 6 3.5675 -0.8479 -1.1703 6 6 3.9569 -1.6657 0.0632 7 1 3.4982 -2.6528 0.0050 8 7 5.4142 -1.8054 0.1172 9 6 5.9676 -2.8482 0.7672 10 8 5.2592 -3.6708 1.3080 11 6 7.4668 -2.9916 0.8233 12 6 7.8242 -4.2311 1.6022 13 6 8.1762 -5.4275 1.0773 14 7 8.4175 -6.2718 2.1020 15 6 8.8269 -7.6736 1.9853 16 7 8.2076 -5.5714 3.2969 17 6 7.8575 -4.3464 2.9968 18 17 7.4927 -3.0846 4.1319 19 6 3.4650 -0.9470 1.3235 20 7 2.0225 -0.6996 1.1944 21 6 1.1538 -1.1129 2.1688 22 1 0.1360 -1.3673 1.9124 23 6 1.5813 -1.2047 3.4863 24 7 2.7046 -0.6266 3.8555 25 14 0.5623 -2.1489 4.7352 26 1 0.4326 -3.5629 4.3008 27 1 1.2314 -2.0980 6.0600 28 1 -0.7868 -1.5366 4.8377 29 1 -0.3634 -1.0276 0.0063 30 1 -0.3633 0.5193 0.8869 31 1 -0.3633 0.5084 -0.8931 32 1 1.7660 -0.1667 -2.1369 33 1 1.6029 -1.7252 -1.2915 34 1 3.9377 -1.3447 -2.0671 35 1 4.0061 0.1474 -1.0994 36 1 5.9809 -1.1471 -0.3149 37 1 7.8621 -3.0726 -0.1893 38 1 7.8973 -2.1178 1.3125 39 1 8.2505 -5.6644 0.0262 40 1 9.9149 -7.7335 1.9611 41 1 8.4510 -8.2342 2.8413 42 1 8.4191 -8.0959 1.0669 43 1 3.6518 -1.5719 2.1969 44 1 3.9922 0.0007 1.4329 45 1 3.0035 -0.6911 4.7761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071825206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:39 Heat of formation + Delta-G solvation = 31.418931 kcal Electronic energy + Delta-G solvation = -28040.895224 eV Core-core repulsion = 24120.631119 eV Total energy + Delta-G solvation = -3920.264105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.35511 -40.67316 -39.11530 -37.76064 -35.87538 -34.61194 -34.48644 -33.04264 -32.00809 -31.64539 -29.31001 -27.71071 -26.99783 -26.14853 -23.96307 -22.55721 -22.27485 -21.68982 -21.17800 -20.67128 -18.30282 -18.14157 -17.77859 -17.23905 -16.63338 -16.44388 -16.13564 -15.92854 -15.64730 -15.35589 -15.02058 -14.81566 -14.57020 -14.36627 -14.31338 -14.02693 -13.94619 -13.49656 -13.24389 -13.06789 -12.85506 -12.73039 -12.64457 -12.58181 -12.55250 -12.49413 -12.26069 -12.10255 -11.94212 -11.62585 -11.54727 -11.34279 -11.09163 -10.71573 -10.50824 -10.29016 -9.90809 -9.43968 -8.59006 -7.82970 -5.28569 0.52747 0.74617 1.37469 1.40719 1.44049 1.47200 1.90672 2.00010 2.45992 2.56912 3.33358 3.55441 3.72587 3.88597 4.01756 4.10597 4.14706 4.25737 4.35317 4.41478 4.44827 4.45674 4.59207 4.68850 4.69229 4.71037 4.74887 4.86266 4.93728 4.99681 5.03134 5.11507 5.15935 5.23141 5.36838 5.42821 5.56527 5.63142 5.65752 5.72450 5.90825 6.01839 6.39755 6.43481 6.84530 7.18789 7.57924 7.94078 8.41949 9.20877 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.003781 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.410277 B = 7402.696270 C = 8787.352333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.021 0.979 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.134 3.866 7 H 0.046 0.954 8 N -0.712 5.712 9 C 0.503 3.497 10 O -0.582 6.582 11 C -0.051 4.051 12 C -0.228 4.228 13 C 0.093 3.907 14 N -0.363 5.363 15 C 0.093 3.907 16 N -0.328 5.328 17 C 0.116 3.884 18 Cl -0.012 7.012 19 C 0.180 3.820 20 N -0.604 5.604 21 C -0.251 4.251 22 H 0.073 0.927 23 C -0.050 4.050 24 N -0.929 5.929 25 Si 0.949 3.051 26 H -0.288 1.288 27 H -0.299 1.299 28 H -0.266 1.266 29 H 0.044 0.956 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.414 0.586 37 H 0.151 0.849 38 H 0.109 0.891 39 H 0.232 0.768 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.124 0.876 43 H 0.041 0.959 44 H -0.005 1.005 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.429 -7.383 -15.500 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.039 0.961 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.027 3.973 7 H 0.064 0.936 8 N -0.364 5.364 9 C 0.291 3.709 10 O -0.461 6.461 11 C -0.092 4.092 12 C -0.240 4.240 13 C -0.054 4.054 14 N -0.146 5.146 15 C -0.046 4.046 16 N -0.155 5.155 17 C -0.074 4.074 18 Cl 0.016 6.984 19 C 0.053 3.947 20 N -0.328 5.328 21 C -0.381 4.381 22 H 0.091 0.909 23 C -0.245 4.245 24 N -0.575 5.575 25 Si 0.778 3.222 26 H -0.215 1.215 27 H -0.226 1.226 28 H -0.191 1.191 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.250 0.750 37 H 0.169 0.831 38 H 0.127 0.873 39 H 0.249 0.751 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.142 0.858 43 H 0.059 0.941 44 H 0.013 0.987 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 15.214 -8.834 -13.928 22.439 hybrid contribution -0.603 0.567 1.233 1.485 sum 14.611 -8.267 -12.695 21.048 Atomic orbital electron populations 1.21734 0.94933 1.01039 1.00990 1.20807 0.94167 0.93379 0.86866 0.96120 1.21951 0.94987 1.00684 0.98147 1.21635 0.96727 1.00004 0.96024 1.21391 0.80058 0.98620 0.97209 0.93602 1.45888 1.07176 1.27348 1.56037 1.21368 0.91936 0.80575 0.77028 1.90731 1.65166 1.44257 1.45975 1.19985 0.89741 0.95822 1.03629 1.19570 1.15498 0.98670 0.90308 1.23008 0.97811 0.87966 0.96637 1.48623 1.51855 1.11915 1.02188 1.22362 1.02711 0.73690 1.05853 1.77227 1.25667 1.04644 1.07987 1.22796 1.02428 0.90662 0.91502 1.98406 1.92841 1.46341 1.60820 1.20774 0.83428 0.95167 0.95340 1.44324 1.02695 1.65653 1.20142 1.19419 0.95178 1.36743 0.86778 0.90922 1.25710 0.98924 1.01066 0.98828 1.70139 1.24844 1.46249 1.16305 0.85606 0.78996 0.79018 0.78538 1.21525 1.22559 1.19076 0.93670 0.94484 0.90225 0.88656 0.93149 0.89378 0.90901 0.74955 0.83096 0.87325 0.75149 0.88201 0.89712 0.85781 0.94060 0.98717 0.94870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 7.94 71.98 0.57 -4.18 16 2 C 0.15 6.16 3.50 44.97 0.16 6.32 16 3 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -3.67 5.37 30.67 0.16 -3.51 16 5 C -0.11 -3.05 5.35 30.62 0.16 -2.88 16 6 C 0.13 5.17 2.60 45.07 0.12 5.29 16 7 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 8 N -0.71 -21.78 5.08 -442.16 -2.25 -24.02 16 9 C 0.50 16.99 7.79 87.66 0.68 17.68 16 10 O -0.58 -27.04 15.70 -3.05 -0.05 -27.08 16 11 C -0.05 -1.15 6.04 29.10 0.18 -0.98 16 12 C -0.23 -6.17 4.60 -20.12 -0.09 -6.26 16 13 C 0.09 1.84 11.40 83.54 0.95 2.79 16 14 N -0.36 -8.19 4.01 -369.57 -1.48 -9.67 16 15 C 0.09 1.02 11.47 127.77 1.47 2.48 16 16 N -0.33 -10.79 12.58 -49.68 -0.62 -11.42 16 17 C 0.12 3.96 7.84 85.25 0.67 4.63 16 18 Cl -0.01 -0.43 29.16 -2.72 -0.08 -0.51 16 19 C 0.18 9.17 4.86 86.36 0.42 9.59 16 20 N -0.60 -31.23 2.99 -675.24 -2.02 -33.25 16 21 C -0.25 -14.44 8.61 84.03 0.72 -13.71 16 22 H 0.07 4.03 6.20 -2.91 -0.02 4.01 16 23 C -0.05 -3.01 4.96 84.86 0.42 -2.59 16 24 N -0.93 -59.36 11.14 21.65 0.24 -59.11 16 25 Si 0.95 49.37 29.58 68.60 2.03 51.40 16 26 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 27 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 28 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 29 H 0.04 1.71 7.40 -2.39 -0.02 1.69 16 30 H 0.04 1.50 7.66 -2.38 -0.02 1.48 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.41 8.80 8.60 -92.70 -0.80 8.00 16 37 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.23 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.04 2.56 6.06 -2.38 -0.01 2.55 16 44 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 45 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -90.23 381.46 2.57 -87.66 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.21 Total: 11.35 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 6.59 Total: 14.67 kcal Atomic # 7 Polarization: -131.34 SS G_CDS: -6.13 Total: -137.47 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.03 Total: 51.40 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -90.23 2.57 -87.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071825206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.077 kcal (2) G-P(sol) polarization free energy of solvation -90.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds