Wall clock time and date at job start Sat Apr 11 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47307 * 2 1 4 4 N 1.39929 * 125.74912 * 89.98047 * 3 2 1 5 5 C 1.30409 * 108.95951 * 180.02562 * 4 3 2 6 6 C 1.50700 * 125.97837 * 179.97438 * 5 4 3 7 7 C 1.41342 * 108.04799 * 359.97438 * 5 4 3 8 8 C 1.47305 * 126.43640 * 179.97438 * 7 5 4 9 9 O 1.21623 * 119.99543 * 90.00070 * 8 7 5 10 10 N 1.34772 * 120.00189 * 270.00476 * 8 7 5 11 11 C 1.46497 * 120.00224 * 359.97438 * 10 8 7 12 12 C 1.46504 * 119.99983 * 179.97438 * 10 8 7 13 13 C 1.53005 * 109.47032 * 85.18548 * 12 10 8 14 14 H 1.08998 * 112.96711 * 314.91117 * 13 12 10 15 15 C 1.53944 * 113.76938 * 183.22648 * 13 12 10 16 16 C 1.53948 * 86.28773 * 222.09616 * 15 13 12 17 17 N 1.47580 * 86.11979 * 23.60633 * 16 15 13 18 18 C 1.36931 * 134.49163 * 155.35756 * 17 16 15 19 19 H 1.08005 * 119.99997 * 157.31613 * 18 17 16 20 20 C 1.38813 * 120.00202 * 337.31996 * 18 17 16 21 21 N 1.31617 * 120.00260 * 163.81595 * 20 18 17 22 22 Si 1.86801 * 119.99977 * 343.82147 * 20 18 17 23 23 H 1.48499 * 109.47390 * 87.64422 * 22 20 18 24 24 H 1.48497 * 109.47070 * 207.64674 * 22 20 18 25 25 H 1.48498 * 109.46869 * 327.64466 * 22 20 18 26 26 C 1.34348 * 125.74634 * 270.29225 * 3 2 1 27 27 Cl 1.73592 * 126.32342 * 359.95884 * 26 3 2 28 28 H 1.08999 * 109.47247 * 59.99784 * 1 2 3 29 29 H 1.08999 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46859 * 299.99639 * 1 2 3 31 31 H 1.09005 * 109.46896 * 239.99806 * 2 1 3 32 32 H 1.08999 * 109.47247 * 120.00216 * 2 1 3 33 33 H 1.08997 * 109.46814 * 269.99964 * 6 5 4 34 34 H 1.09000 * 109.46773 * 29.99411 * 6 5 4 35 35 H 1.09000 * 109.47076 * 150.00002 * 6 5 4 36 36 H 1.09000 * 109.46980 * 269.86323 * 11 10 8 37 37 H 1.09005 * 109.46871 * 29.86141 * 11 10 8 38 38 H 1.08997 * 109.47501 * 149.85994 * 11 10 8 39 39 H 1.08995 * 109.46809 * 325.19083 * 12 10 8 40 40 H 1.08996 * 109.47029 * 205.18701 * 12 10 8 41 41 H 1.08996 * 113.73835 * 336.43911 * 15 13 12 42 42 H 1.08996 * 113.74090 * 107.64214 * 15 13 12 43 43 H 1.08998 * 113.76995 * 137.91106 * 16 15 13 44 44 H 1.09003 * 113.76511 * 269.18884 * 16 15 13 45 45 H 0.97000 * 120.00483 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2905 2.1521 1.1356 5 6 2.7063 3.3293 0.7589 6 6 3.1053 4.4609 1.6707 7 6 2.7173 3.3583 -0.6541 8 6 3.1181 4.4937 -1.5028 9 8 4.2769 4.6121 -1.8525 10 7 2.2007 5.4012 -1.8916 11 6 0.8048 5.2583 -1.4706 12 6 2.5994 6.5307 -2.7351 13 6 2.5779 6.1028 -4.2040 14 1 3.0433 5.1314 -4.3708 15 6 3.0580 7.1959 -5.1758 16 6 1.8871 6.7671 -6.0786 17 7 1.2581 6.2510 -4.8474 18 6 -0.0321 6.0076 -4.4584 19 1 -0.2330 5.3030 -3.6648 20 6 -1.0817 6.6663 -5.0839 21 7 -2.3124 6.2194 -4.9498 22 14 -0.7475 8.1869 -6.1161 23 1 -0.4337 7.7803 -7.5094 24 1 -1.9484 9.0604 -6.1138 25 1 0.4054 8.9289 -5.5455 26 6 2.2748 2.1230 -1.0904 27 17 2.0896 1.6216 -2.7420 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2325 5.0758 1.8900 34 1 3.5063 4.0549 2.5994 35 1 3.8656 5.0703 1.1822 36 1 0.2618 4.6666 -2.2077 37 1 0.7665 4.7576 -0.5031 38 1 0.3474 6.2442 -1.3878 39 1 3.6060 6.8490 -2.4641 40 1 1.9047 7.3575 -2.5874 41 1 2.9605 8.2073 -4.7814 42 1 4.0404 7.0003 -5.6056 43 1 1.3510 7.6024 -6.5291 44 1 2.1488 5.9918 -6.7988 45 1 -3.0459 6.6799 -5.3866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085980635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:52 Heat of formation + Delta-G solvation = 105.329227 kcal Electronic energy + Delta-G solvation = -28649.671475 eV Core-core repulsion = 24732.612361 eV Total energy + Delta-G solvation = -3917.059114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57438 -39.31495 -37.94457 -36.98380 -35.07599 -34.86264 -32.28767 -31.52243 -30.47083 -28.81631 -28.04590 -27.72119 -26.05291 -24.17673 -23.22180 -22.81888 -21.57705 -20.39619 -19.26033 -18.85687 -17.39021 -17.05307 -16.56510 -15.90142 -15.53544 -15.41741 -15.01723 -14.83701 -14.49439 -13.99396 -13.59805 -13.47058 -13.24797 -13.20421 -12.95276 -12.74013 -12.52507 -12.43893 -12.40771 -12.23033 -11.89585 -11.85695 -11.69011 -11.52984 -11.39714 -11.25005 -11.05833 -10.83951 -10.77899 -10.41157 -10.25886 -9.71439 -9.59267 -9.34794 -9.29013 -8.65471 -8.62189 -8.15432 -6.99298 -5.92473 -3.25243 1.29007 1.39431 2.27707 2.37066 2.83679 3.36071 3.47019 3.50344 3.52140 4.14983 4.56813 4.58071 4.65710 4.71107 4.85434 4.89256 4.98978 5.27467 5.31930 5.35876 5.38872 5.40679 5.49160 5.63774 5.67685 5.73601 5.77504 5.81961 5.91709 6.02192 6.06286 6.14591 6.25289 6.26467 6.39735 6.42647 6.47594 6.49527 6.50460 6.90010 7.15490 7.36448 7.38084 7.80968 8.37169 8.52369 8.73986 9.67830 10.40513 11.24197 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.004038 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.440725 B = 6931.903726 C = 7616.160278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.122 3.878 3 N -0.352 5.352 4 N -0.276 5.276 5 C 0.116 3.884 6 C -0.076 4.076 7 C -0.247 4.247 8 C 0.593 3.407 9 O -0.540 6.540 10 N -0.587 5.587 11 C 0.086 3.914 12 C 0.120 3.880 13 C 0.136 3.864 14 H 0.057 0.943 15 C -0.147 4.147 16 C 0.100 3.900 17 N -0.617 5.617 18 C -0.228 4.228 19 H 0.098 0.902 20 C 0.022 3.978 21 N -0.916 5.916 22 Si 0.888 3.112 23 H -0.290 1.290 24 H -0.305 1.305 25 H -0.272 1.272 26 C 0.159 3.841 27 Cl 0.018 6.982 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.044 0.956 44 H 0.041 0.959 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.525 -8.650 11.561 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.135 5.135 4 N -0.099 5.099 5 C -0.051 4.051 6 C -0.135 4.135 7 C -0.263 4.263 8 C 0.379 3.621 9 O -0.417 6.417 10 N -0.318 5.318 11 C -0.057 4.057 12 C -0.004 4.004 13 C 0.028 3.972 14 H 0.075 0.925 15 C -0.186 4.186 16 C -0.025 4.025 17 N -0.345 5.345 18 C -0.355 4.355 19 H 0.115 0.885 20 C -0.176 4.176 21 N -0.561 5.561 22 Si 0.720 3.280 23 H -0.217 1.217 24 H -0.233 1.233 25 H -0.198 1.198 26 C 0.002 3.998 27 Cl 0.047 6.953 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.373 -9.541 12.246 17.638 hybrid contribution -0.130 0.972 -1.757 2.012 sum 8.242 -8.569 10.489 15.855 Atomic orbital electron populations 1.22205 0.93397 1.03530 1.03893 1.21872 0.95998 0.76962 1.04977 1.48530 1.50553 1.12437 1.01940 1.77189 1.23275 1.04003 1.05449 1.22239 0.96899 0.94263 0.91661 1.20284 1.02453 0.93254 0.97490 1.19790 1.17445 0.94997 0.94051 1.17115 0.84901 0.81019 0.79109 1.90754 1.18569 1.75474 1.56949 1.47694 1.09075 1.25507 1.49493 1.21926 0.81206 1.03374 0.99187 1.21889 1.00629 0.87865 0.89988 1.22653 0.86788 0.96261 0.91460 0.92545 1.23602 0.97433 0.99367 0.98217 1.22775 0.91864 0.96416 0.91445 1.46293 1.00767 1.77968 1.09520 1.18808 0.78668 1.18962 1.19046 0.88502 1.24956 0.94763 0.98587 0.99292 1.69780 0.98946 1.40429 1.46903 0.86771 0.75998 0.85160 0.80108 1.21732 1.23272 1.19766 1.21975 1.01734 0.92032 0.84013 1.98467 1.95767 1.90945 1.10160 0.91395 0.90064 0.91263 0.88587 0.87924 0.89729 0.90199 0.89910 0.91003 0.92710 0.90470 0.90479 0.89419 0.90261 0.92151 0.93797 0.94113 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.12 1.09 6.97 -4.04 -0.03 1.06 16 3 N -0.35 -4.55 3.58 -57.57 -0.21 -4.76 16 4 N -0.28 -3.81 12.49 33.90 0.42 -3.38 16 5 C 0.12 1.61 6.96 -82.02 -0.57 1.04 16 6 C -0.08 -0.81 10.28 36.01 0.37 -0.44 16 7 C -0.25 -3.93 4.11 -105.01 -0.43 -4.36 16 8 C 0.59 10.54 7.03 -12.58 -0.09 10.45 16 9 O -0.54 -10.95 16.77 5.26 0.09 -10.86 16 10 N -0.59 -10.25 2.88 -182.89 -0.53 -10.78 16 11 C 0.09 1.45 9.36 59.85 0.56 2.01 16 12 C 0.12 2.13 5.27 -4.04 -0.02 2.10 16 13 C 0.14 2.68 4.51 -66.86 -0.30 2.38 16 14 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.15 -2.64 7.86 -25.80 -0.20 -2.84 16 16 C 0.10 2.12 7.52 -2.97 -0.02 2.10 16 17 N -0.62 -14.45 3.23 -170.72 -0.55 -15.00 16 18 C -0.23 -6.08 10.55 -15.06 -0.16 -6.24 16 19 H 0.10 2.66 4.98 -52.48 -0.26 2.40 16 20 C 0.02 0.62 5.50 -17.43 -0.10 0.53 16 21 N -0.92 -27.38 13.97 55.49 0.78 -26.61 16 22 Si 0.89 22.37 24.76 -169.99 -4.21 18.16 16 23 H -0.29 -7.30 7.05 56.52 0.40 -6.90 16 24 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 25 H -0.27 -6.59 6.77 56.52 0.38 -6.20 16 26 C 0.16 2.37 7.54 -16.43 -0.12 2.25 16 27 Cl 0.02 0.27 28.57 -51.86 -1.48 -1.21 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.73 7.78 -51.93 -0.40 0.33 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.90 8.01 -51.93 -0.42 0.49 16 36 H 0.07 1.41 5.85 -51.93 -0.30 1.11 16 37 H 0.05 0.82 6.64 -51.93 -0.34 0.47 16 38 H 0.08 1.29 7.86 -51.93 -0.41 0.88 16 39 H 0.08 1.28 7.57 -51.93 -0.39 0.89 16 40 H 0.09 1.58 7.84 -51.93 -0.41 1.17 16 41 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.04 0.99 3.72 -51.93 -0.19 0.80 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -33.20 380.81 -7.20 -40.40 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.51 Total: -0.70 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -0.73 Total: 9.01 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.09 Total: -60.52 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.21 Total: 18.16 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.48 Total: -1.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.20 -7.20 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085980635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.725 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds