Wall clock time and date at job start Sat Apr 11 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47307 * 2 1 4 4 N 1.39929 * 125.74912 * 89.98047 * 3 2 1 5 5 C 1.30409 * 108.95951 * 180.02562 * 4 3 2 6 6 C 1.50700 * 125.97837 * 179.97438 * 5 4 3 7 7 C 1.41342 * 108.04799 * 359.97438 * 5 4 3 8 8 C 1.47305 * 126.43640 * 179.97438 * 7 5 4 9 9 O 1.21623 * 119.99543 * 90.00070 * 8 7 5 10 10 N 1.34772 * 120.00189 * 270.00476 * 8 7 5 11 11 C 1.46497 * 120.00224 * 359.97438 * 10 8 7 12 12 C 1.46504 * 119.99983 * 179.97438 * 10 8 7 13 13 C 1.53005 * 109.47032 * 85.18548 * 12 10 8 14 14 H 1.08998 * 112.96711 * 314.91117 * 13 12 10 15 15 C 1.53944 * 113.76938 * 183.22648 * 13 12 10 16 16 C 1.53948 * 86.28773 * 222.09616 * 15 13 12 17 17 N 1.47580 * 86.11979 * 23.60633 * 16 15 13 18 18 C 1.36931 * 134.49163 * 155.35756 * 17 16 15 19 19 H 1.08005 * 119.99997 * 157.31613 * 18 17 16 20 20 C 1.38813 * 120.00202 * 337.31996 * 18 17 16 21 21 N 1.31617 * 120.00260 * 163.81595 * 20 18 17 22 22 Si 1.86801 * 119.99977 * 343.82147 * 20 18 17 23 23 H 1.48499 * 109.47390 * 87.64422 * 22 20 18 24 24 H 1.48497 * 109.47070 * 207.64674 * 22 20 18 25 25 H 1.48498 * 109.46869 * 327.64466 * 22 20 18 26 26 C 1.34348 * 125.74634 * 270.29225 * 3 2 1 27 27 Cl 1.73592 * 126.32342 * 359.95884 * 26 3 2 28 28 H 1.08999 * 109.47247 * 59.99784 * 1 2 3 29 29 H 1.08999 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46859 * 299.99639 * 1 2 3 31 31 H 1.09005 * 109.46896 * 239.99806 * 2 1 3 32 32 H 1.08999 * 109.47247 * 120.00216 * 2 1 3 33 33 H 1.08997 * 109.46814 * 269.99964 * 6 5 4 34 34 H 1.09000 * 109.46773 * 29.99411 * 6 5 4 35 35 H 1.09000 * 109.47076 * 150.00002 * 6 5 4 36 36 H 1.09000 * 109.46980 * 269.86323 * 11 10 8 37 37 H 1.09005 * 109.46871 * 29.86141 * 11 10 8 38 38 H 1.08997 * 109.47501 * 149.85994 * 11 10 8 39 39 H 1.08995 * 109.46809 * 325.19083 * 12 10 8 40 40 H 1.08996 * 109.47029 * 205.18701 * 12 10 8 41 41 H 1.08996 * 113.73835 * 336.43911 * 15 13 12 42 42 H 1.08996 * 113.74090 * 107.64214 * 15 13 12 43 43 H 1.08998 * 113.76995 * 137.91106 * 16 15 13 44 44 H 1.09003 * 113.76511 * 269.18884 * 16 15 13 45 45 H 0.97000 * 120.00483 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2905 2.1521 1.1356 5 6 2.7063 3.3293 0.7589 6 6 3.1053 4.4609 1.6707 7 6 2.7173 3.3583 -0.6541 8 6 3.1181 4.4937 -1.5028 9 8 4.2769 4.6121 -1.8525 10 7 2.2007 5.4012 -1.8916 11 6 0.8048 5.2583 -1.4706 12 6 2.5994 6.5307 -2.7351 13 6 2.5779 6.1028 -4.2040 14 1 3.0433 5.1314 -4.3708 15 6 3.0580 7.1959 -5.1758 16 6 1.8871 6.7671 -6.0786 17 7 1.2581 6.2510 -4.8474 18 6 -0.0321 6.0076 -4.4584 19 1 -0.2330 5.3030 -3.6648 20 6 -1.0817 6.6663 -5.0839 21 7 -2.3124 6.2194 -4.9498 22 14 -0.7475 8.1869 -6.1161 23 1 -0.4337 7.7803 -7.5094 24 1 -1.9484 9.0604 -6.1138 25 1 0.4054 8.9289 -5.5455 26 6 2.2748 2.1230 -1.0904 27 17 2.0896 1.6216 -2.7420 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2325 5.0758 1.8900 34 1 3.5063 4.0549 2.5994 35 1 3.8656 5.0703 1.1822 36 1 0.2618 4.6666 -2.2077 37 1 0.7665 4.7576 -0.5031 38 1 0.3474 6.2442 -1.3878 39 1 3.6060 6.8490 -2.4641 40 1 1.9047 7.3575 -2.5874 41 1 2.9605 8.2073 -4.7814 42 1 4.0404 7.0003 -5.6056 43 1 1.3510 7.6024 -6.5291 44 1 2.1488 5.9918 -6.7988 45 1 -3.0459 6.6799 -5.3866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085980635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:51 Heat of formation + Delta-G solvation = 84.234006 kcal Electronic energy + Delta-G solvation = -28650.586232 eV Core-core repulsion = 24732.612361 eV Total energy + Delta-G solvation = -3917.973871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.66487 -40.77451 -39.54172 -38.14607 -36.34186 -35.95136 -34.35310 -32.39026 -31.69420 -30.53056 -29.54233 -28.71240 -27.46233 -25.44220 -24.98909 -24.06300 -22.71367 -21.50527 -20.83575 -20.22745 -19.01372 -18.47869 -17.85129 -17.35352 -17.03011 -16.66374 -16.48248 -16.15190 -15.46526 -15.32666 -15.23476 -14.80799 -14.64847 -14.43596 -14.22077 -14.17888 -13.79545 -13.64391 -13.39111 -13.30042 -13.18387 -13.04542 -12.90614 -12.87932 -12.74957 -12.69399 -12.61060 -12.29837 -12.15237 -11.94897 -11.86528 -11.51035 -11.21789 -11.00631 -10.69025 -10.36747 -9.77370 -9.63709 -8.93371 -8.06403 -5.35188 0.16328 0.27738 1.17866 1.35037 1.40322 1.42149 1.46846 1.52149 2.16015 2.50856 2.95447 3.18358 3.29800 3.67943 3.75000 3.81811 3.95659 3.99763 4.17245 4.23790 4.25283 4.28715 4.39085 4.55106 4.57964 4.63324 4.66697 4.68060 4.70316 4.72733 4.77138 4.81494 4.93323 4.93925 4.98751 5.01752 5.14115 5.29882 5.41137 5.52699 5.53948 5.66918 6.27736 6.30559 6.41129 6.67454 7.12118 7.57525 8.41428 9.13784 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.004038 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.440725 B = 6931.903726 C = 7616.160278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.111 3.889 3 N -0.345 5.345 4 N -0.281 5.281 5 C 0.115 3.885 6 C -0.075 4.075 7 C -0.274 4.274 8 C 0.599 3.401 9 O -0.567 6.567 10 N -0.588 5.588 11 C 0.099 3.901 12 C 0.123 3.877 13 C 0.134 3.866 14 H 0.043 0.957 15 C -0.124 4.124 16 C 0.087 3.913 17 N -0.638 5.638 18 C -0.205 4.205 19 H 0.081 0.919 20 C -0.037 4.037 21 N -0.962 5.962 22 Si 0.940 3.060 23 H -0.291 1.291 24 H -0.315 1.315 25 H -0.253 1.253 26 C 0.153 3.847 27 Cl 0.013 6.987 28 H 0.047 0.953 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.036 0.964 44 H 0.048 0.952 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.255 -8.498 12.524 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.007 4.007 3 N -0.127 5.127 4 N -0.104 5.104 5 C -0.051 4.051 6 C -0.134 4.134 7 C -0.291 4.291 8 C 0.386 3.614 9 O -0.447 6.447 10 N -0.318 5.318 11 C -0.043 4.043 12 C -0.001 4.001 13 C 0.028 3.972 14 H 0.061 0.939 15 C -0.162 4.162 16 C -0.037 4.037 17 N -0.366 5.366 18 C -0.333 4.333 19 H 0.098 0.902 20 C -0.231 4.231 21 N -0.611 5.611 22 Si 0.772 3.228 23 H -0.219 1.219 24 H -0.244 1.244 25 H -0.178 1.178 26 C -0.005 4.005 27 Cl 0.041 6.959 28 H 0.066 0.934 29 H 0.128 0.872 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.143 0.857 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.146 -9.397 13.224 19.135 hybrid contribution -0.609 0.757 -2.025 2.246 sum 9.537 -8.640 11.199 17.059 Atomic orbital electron populations 1.22174 0.92820 1.04991 1.02428 1.22297 0.96442 0.75250 1.06748 1.48906 1.49377 1.13332 1.01087 1.77173 1.23462 1.04062 1.05719 1.22684 0.96304 0.94996 0.91150 1.20410 1.02999 0.92410 0.97554 1.19790 1.19442 0.94886 0.94947 1.17305 0.84355 0.81085 0.78645 1.90726 1.19648 1.76194 1.58106 1.47740 1.09145 1.25547 1.49343 1.21742 0.80621 1.02886 0.99088 1.21837 1.01595 0.87833 0.88799 1.22726 0.84682 0.96582 0.93198 0.93930 1.23467 0.97654 0.99110 0.95960 1.22985 0.93059 0.96321 0.91349 1.46562 1.00767 1.77744 1.11576 1.18865 0.80238 1.16985 1.17178 0.90192 1.25495 0.94707 1.01290 1.01563 1.69902 0.99815 1.41943 1.49410 0.85917 0.75823 0.82344 0.78719 1.21926 1.24432 1.17792 1.22026 1.01890 0.92326 0.84268 1.98460 1.95802 1.90960 1.10693 0.93408 0.87168 0.92052 0.87305 0.85685 0.88257 0.88301 0.90326 0.94131 0.90767 0.90516 0.88742 0.89480 0.88848 0.88837 0.94596 0.93464 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 10.24 71.98 0.74 -1.78 16 2 C 0.11 1.79 6.97 86.38 0.60 2.39 16 3 N -0.34 -8.51 3.58 -336.06 -1.20 -9.71 16 4 N -0.28 -7.31 12.49 -46.66 -0.58 -7.89 16 5 C 0.11 3.04 6.96 43.53 0.30 3.34 16 6 C -0.08 -1.45 10.28 71.24 0.73 -0.71 16 7 C -0.27 -8.56 4.11 -20.12 -0.08 -8.64 16 8 C 0.60 20.91 7.03 86.63 0.61 21.52 16 9 O -0.57 -22.57 16.77 -4.10 -0.07 -22.64 16 10 N -0.59 -20.14 2.88 -850.80 -2.45 -22.59 16 11 C 0.10 3.36 9.36 127.77 1.20 4.55 16 12 C 0.12 4.16 5.27 86.38 0.45 4.62 16 13 C 0.13 5.10 4.51 45.09 0.20 5.30 16 14 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 15 C -0.12 -3.99 7.86 31.25 0.25 -3.75 16 16 C 0.09 3.53 7.52 86.48 0.65 4.18 16 17 N -0.64 -29.25 3.23 -694.04 -2.25 -31.50 16 18 C -0.20 -10.99 10.55 84.03 0.89 -10.10 16 19 H 0.08 4.52 4.98 -2.91 -0.01 4.50 16 20 C -0.04 -2.11 5.50 84.86 0.47 -1.64 16 21 N -0.96 -59.13 13.97 21.65 0.30 -58.83 16 22 Si 0.94 46.23 24.76 68.60 1.70 47.93 16 23 H -0.29 -14.23 7.05 99.48 0.70 -13.53 16 24 H -0.32 -15.90 7.11 99.48 0.71 -15.19 16 25 H -0.25 -11.50 6.77 99.48 0.67 -10.83 16 26 C 0.15 4.49 7.54 84.32 0.64 5.12 16 27 Cl 0.01 0.38 28.57 -2.72 -0.08 0.30 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.11 1.48 7.78 -2.38 -0.02 1.46 16 32 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.58 8.01 -2.39 -0.02 1.57 16 36 H 0.04 1.64 5.85 -2.39 -0.01 1.62 16 37 H 0.07 2.18 6.64 -2.38 -0.02 2.17 16 38 H 0.08 2.57 7.86 -2.39 -0.02 2.55 16 39 H 0.09 2.91 7.57 -2.39 -0.02 2.89 16 40 H 0.09 2.99 7.84 -2.39 -0.02 2.97 16 41 H 0.09 2.81 8.10 -2.39 -0.02 2.79 16 42 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.04 1.53 3.72 -2.39 -0.01 1.52 16 44 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -72.02 380.81 3.98 -68.04 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.97 Total: 12.50 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: 7.64 Total: 24.40 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -6.18 Total: -130.52 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.07 Total: -22.64 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.70 Total: 47.93 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -0.08 Total: 0.30 kcal Total: -72.02 3.98 -68.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085980635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.272 kcal (2) G-P(sol) polarization free energy of solvation -72.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds