Wall clock time and date at job start Sat Apr 11 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.88445 * 2 1 4 4 C 1.54908 * 111.00368 * 236.12120 * 2 1 3 5 5 N 1.47425 * 104.92961 * 204.85960 * 4 2 1 6 6 C 1.36938 * 125.65179 * 204.15650 * 5 4 2 7 7 H 1.07995 * 120.00281 * 180.02562 * 6 5 4 8 8 C 1.38810 * 119.99650 * 0.02562 * 6 5 4 9 9 N 1.31621 * 120.00025 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00113 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47166 * 59.99694 * 10 8 6 12 12 H 1.48493 * 109.47565 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47135 * 300.00010 * 10 8 6 14 14 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 15 15 C 1.54325 * 107.30599 * 358.92448 * 14 5 4 16 16 H 1.08997 * 110.72163 * 96.18354 * 15 14 5 17 17 C 1.53003 * 110.72022 * 219.45263 * 15 14 5 18 18 N 1.46494 * 109.47093 * 288.52410 * 17 15 14 19 19 C 1.34776 * 119.99924 * 180.02562 * 18 17 15 20 20 O 1.21484 * 119.99939 * 0.02562 * 19 18 17 21 21 C 1.48451 * 120.00171 * 179.97438 * 19 18 17 22 22 C 1.39534 * 120.55256 * 179.97438 * 21 19 18 23 23 C 1.38763 * 118.26766 * 179.97438 * 22 21 19 24 24 C 1.50702 * 120.42878 * 179.97438 * 23 22 21 25 25 F 1.39900 * 109.47131 * 209.99822 * 24 23 22 26 26 F 1.39904 * 109.47081 * 330.00118 * 24 23 22 27 27 N 1.32206 * 119.14347 * 359.97438 * 23 22 21 28 28 C 1.31878 * 121.03679 * 0.02562 * 27 23 22 29 29 N 1.31581 * 121.92052 * 359.73221 * 28 27 23 30 30 H 1.09001 * 109.47276 * 182.42937 * 1 2 3 31 31 H 1.09003 * 109.46690 * 302.42477 * 1 2 3 32 32 H 1.08998 * 109.47248 * 62.42638 * 1 2 3 33 33 H 1.09002 * 110.36632 * 323.75356 * 4 2 1 34 34 H 1.08995 * 110.36781 * 85.96593 * 4 2 1 35 35 H 0.97001 * 119.99611 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.85762 * 239.50064 * 14 5 4 37 37 H 1.08999 * 109.87327 * 118.35916 * 14 5 4 38 38 H 1.09000 * 109.46700 * 48.52364 * 17 15 14 39 39 H 1.09004 * 109.46934 * 168.52488 * 17 15 14 40 40 H 0.96994 * 120.00707 * 0.02562 * 18 17 15 41 41 H 1.08005 * 120.86786 * 0.02562 * 22 21 19 42 42 H 1.09005 * 109.46832 * 89.99912 * 24 23 22 43 43 H 1.08001 * 119.03627 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0185 0.0000 4 6 2.0852 -0.8061 -1.2006 5 7 3.4280 -1.2427 -0.7766 6 6 4.4637 -1.5645 -1.6126 7 1 5.4129 -1.8750 -1.2017 8 6 4.2935 -1.4915 -2.9883 9 7 3.1367 -1.1126 -3.4891 10 14 5.7060 -1.9310 -4.1289 11 1 6.1137 -3.3392 -3.8920 12 1 5.2707 -1.7729 -5.5397 13 1 6.8566 -1.0310 -3.8615 14 6 3.4675 -1.2744 0.6955 15 6 2.0862 -0.8083 1.2019 16 1 1.4468 -1.6636 1.4204 17 6 2.2350 0.0867 2.4339 18 7 2.6469 -0.7260 3.5810 19 6 2.8403 -0.1468 4.7825 20 8 2.6726 1.0492 4.9143 21 6 3.2572 -0.9704 5.9451 22 6 3.4611 -0.3825 7.1940 23 6 3.8497 -1.1971 8.2481 24 6 4.0840 -0.6133 9.6176 25 9 5.0561 -1.3659 10.2852 26 9 4.5228 0.7092 9.4920 27 7 4.0117 -2.4918 8.0355 28 6 3.8105 -3.0153 6.8419 29 7 3.4370 -2.2825 5.8148 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3633 0.5511 0.8675 32 1 -0.3633 0.4757 -0.9109 33 1 1.4518 -1.6698 -1.4031 34 1 2.1541 -0.1717 -2.0842 35 1 3.0177 -1.0619 -4.4504 36 1 4.2427 -0.6001 1.0596 37 1 3.6651 -2.2897 1.0391 38 1 2.9889 0.8497 2.2396 39 1 1.2807 0.5661 2.6521 40 1 2.7805 -1.6809 3.4759 41 1 3.3194 0.6786 7.3368 42 1 3.1540 -0.6351 10.1858 43 1 3.9519 -4.0771 6.7046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092725613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:03 Heat of formation + Delta-G solvation = -60.601099 kcal Electronic energy + Delta-G solvation = -28697.436584 eV Core-core repulsion = 24221.385511 eV Total energy + Delta-G solvation = -4476.051073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.57618 -47.57907 -41.79184 -39.69237 -38.03601 -35.10019 -34.61613 -33.06383 -32.92918 -30.77363 -29.51004 -28.24205 -26.33908 -25.66521 -24.75941 -24.11502 -22.75378 -21.18646 -19.92914 -19.64255 -18.72601 -18.67131 -18.14903 -17.42792 -16.82238 -16.50854 -16.09243 -15.94609 -15.88681 -15.45730 -15.12033 -14.79964 -14.38270 -14.27760 -13.92150 -13.88365 -13.74003 -13.46482 -13.20544 -12.80539 -12.68156 -12.20811 -11.97692 -11.62882 -11.57812 -11.53083 -11.33953 -11.19104 -10.91955 -10.81234 -10.76583 -10.37752 -10.24703 -10.06611 -9.98666 -9.91626 -9.77872 -9.43077 -9.15413 -8.66693 -6.85516 -5.66927 -3.08780 -0.11364 0.11660 2.33887 2.52077 2.72254 3.22500 3.36077 3.39424 3.43692 3.44405 3.44902 3.61841 4.02543 4.25227 4.32682 4.40352 4.46995 4.79551 4.94270 5.04220 5.16891 5.25014 5.47191 5.51985 5.54009 5.69812 5.80229 5.99359 6.02168 6.08605 6.15432 6.21502 6.28615 6.48727 6.55894 6.59478 6.74440 6.90351 7.17460 7.37183 7.51018 7.60652 7.84118 7.88075 8.34488 9.20372 9.80887 10.45932 11.36710 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.017727 B = 0.002158 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.132408 B =12968.977868 C =13818.721135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.072 0.928 4 C 0.158 3.842 5 N -0.605 5.605 6 C -0.223 4.223 7 H 0.076 0.924 8 C -0.011 4.011 9 N -0.922 5.922 10 Si 0.915 3.085 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.140 3.860 15 C -0.110 4.110 16 H 0.079 0.921 17 C 0.129 3.871 18 N -0.695 5.695 19 C 0.564 3.436 20 O -0.524 6.524 21 C 0.145 3.855 22 C -0.141 4.141 23 C 0.098 3.902 24 C 0.331 3.669 25 F -0.181 7.181 26 F -0.186 7.186 27 N -0.480 5.480 28 C 0.304 3.696 29 N -0.480 5.480 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.013 0.987 34 H 0.107 0.893 35 H 0.253 0.747 36 H 0.024 0.976 37 H 0.020 0.980 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.414 0.586 41 H 0.171 0.829 42 H 0.140 0.860 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 -0.349 24.553 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.351 4.351 7 H 0.094 0.906 8 C -0.207 4.207 9 N -0.571 5.571 10 Si 0.745 3.255 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.014 3.986 15 C -0.130 4.130 16 H 0.097 0.903 17 C 0.006 3.994 18 N -0.345 5.345 19 C 0.347 3.653 20 O -0.399 6.399 21 C -0.004 4.004 22 C -0.164 4.164 23 C -0.052 4.052 24 C 0.276 3.724 25 F -0.162 7.162 26 F -0.168 7.168 27 N -0.194 5.194 28 C 0.016 3.984 29 N -0.197 5.197 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.125 0.875 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.250 0.750 41 H 0.188 0.812 42 H 0.157 0.843 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.974 -0.447 24.216 24.544 hybrid contribution 0.860 -0.038 -0.489 0.990 sum -3.114 -0.486 23.727 23.936 Atomic orbital electron populations 1.21656 0.95452 1.01246 1.00893 1.22606 0.94615 0.99543 0.96297 0.90951 1.21987 0.84050 0.95939 0.94663 1.44532 1.10534 1.79065 0.98932 1.19021 0.91045 1.37866 0.87171 0.90602 1.24783 0.97291 1.01965 0.96617 1.69778 1.22353 1.53742 1.11219 0.86150 0.81209 0.78180 0.79940 1.21232 1.21551 1.21163 1.21399 0.93279 0.97272 0.86655 1.22515 0.98857 0.98162 0.93424 0.90285 1.21637 1.00498 0.93775 0.83462 1.45967 1.66669 1.13397 1.08490 1.17666 0.78718 0.86533 0.82405 1.90826 1.51334 1.13727 1.84014 1.21809 0.94025 0.90407 0.94145 1.22686 0.97451 1.03905 0.92339 1.22222 0.95798 0.91045 0.96090 1.20054 0.90661 0.73474 0.88231 1.93068 1.66026 1.76022 1.81067 1.93072 1.91476 1.35718 1.96487 1.68034 1.13303 1.12160 1.25900 1.25143 0.90081 1.01161 0.82017 1.68421 1.10886 1.05723 1.34636 0.93000 0.93682 0.92511 0.96894 0.87534 0.93664 0.95817 0.96192 0.90658 0.90994 0.75004 0.81158 0.84330 0.77016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.29 37.16 0.35 -1.63 16 2 C -0.11 -1.96 3.09 -88.47 -0.27 -2.23 16 3 H 0.07 1.30 8.05 -51.92 -0.42 0.89 16 4 C 0.16 3.71 5.35 -2.53 -0.01 3.70 16 5 N -0.60 -15.18 3.40 -169.86 -0.58 -15.76 16 6 C -0.22 -6.16 10.28 -15.06 -0.15 -6.31 16 7 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 8 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 9 N -0.92 -26.57 10.09 55.49 0.56 -26.01 16 10 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.14 2.79 6.77 -2.92 -0.02 2.77 16 15 C -0.11 -1.76 2.43 -88.78 -0.22 -1.98 16 16 H 0.08 1.19 8.01 -51.93 -0.42 0.77 16 17 C 0.13 1.80 5.02 -4.04 -0.02 1.78 16 18 N -0.69 -8.78 5.46 -61.05 -0.33 -9.12 16 19 C 0.56 7.35 7.83 -12.05 -0.09 7.26 16 20 O -0.52 -8.10 16.43 5.38 0.09 -8.02 16 21 C 0.15 1.59 6.79 -82.64 -0.56 1.03 16 22 C -0.14 -1.32 9.07 -38.90 -0.35 -1.67 16 23 C 0.10 0.83 6.61 -82.24 -0.54 0.28 16 24 C 0.33 2.13 5.74 36.01 0.21 2.33 16 25 F -0.18 -1.56 17.09 2.25 0.04 -1.52 16 26 F -0.19 -1.45 16.56 2.25 0.04 -1.41 16 27 N -0.48 -4.32 10.08 -10.81 -0.11 -4.43 16 28 C 0.30 2.50 12.27 -92.27 -1.13 1.37 16 29 N -0.48 -4.81 9.70 -11.14 -0.11 -4.92 16 30 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.01 0.33 8.04 -51.93 -0.42 -0.09 16 34 H 0.11 2.85 5.86 -51.93 -0.30 2.54 16 35 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.02 0.48 7.68 -51.93 -0.40 0.08 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 1.15 7.93 -51.93 -0.41 0.74 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.41 4.83 7.86 -40.82 -0.32 4.51 16 41 H 0.17 1.45 7.38 -52.48 -0.39 1.06 16 42 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.21 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -32.62 369.55 -8.36 -40.99 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.58 Total: 1.40 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -2.93 Total: 6.29 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.57 Total: -60.24 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.09 Total: -8.02 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.62 -8.36 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092725613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.614 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds