Wall clock time and date at job start Sat Apr 11 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.91541 * 2 1 4 4 C 1.55124 * 111.15891 * 236.07413 * 2 1 3 5 5 N 1.47432 * 104.93692 * 205.13156 * 4 2 1 6 6 C 1.34778 * 125.64292 * 203.96487 * 5 4 2 7 7 O 1.21576 * 119.99749 * 180.02562 * 6 5 4 8 8 C 1.47669 * 120.00448 * 0.04566 * 6 5 4 9 9 N 1.31826 * 126.45616 * 359.68411 * 8 6 5 10 10 N 1.28473 * 110.13291 * 179.85937 * 9 8 6 11 11 C 1.46493 * 124.93664 * 180.14847 * 10 9 8 12 12 C 1.35644 * 110.12853 * 0.41730 * 10 9 8 13 13 C 1.35457 * 107.13302 * 359.74785 * 12 10 9 14 14 Cl 1.73606 * 127.23694 * 180.02562 * 13 12 10 15 15 C 1.47017 * 108.70437 * 24.00488 * 5 4 2 16 16 C 1.54318 * 107.27462 * 358.93764 * 15 5 4 17 17 H 1.08998 * 110.72058 * 96.34446 * 16 15 5 18 18 C 1.52999 * 110.72472 * 219.44863 * 16 15 5 19 19 C 1.53006 * 109.46623 * 291.15597 * 18 16 15 20 20 N 1.46500 * 109.46998 * 179.97438 * 19 18 16 21 21 C 1.36931 * 120.00396 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99774 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00545 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99833 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00256 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47136 * 89.99695 * 25 23 21 27 27 H 1.48503 * 109.47098 * 209.99762 * 25 23 21 28 28 H 1.48496 * 109.47087 * 329.99418 * 25 23 21 29 29 H 1.09000 * 109.46825 * 296.09903 * 1 2 3 30 30 H 1.09007 * 109.46961 * 56.09603 * 1 2 3 31 31 H 1.08993 * 109.47349 * 176.09561 * 1 2 3 32 32 H 1.08996 * 110.42102 * 86.20771 * 4 2 1 33 33 H 1.09002 * 110.30029 * 323.99385 * 4 2 1 34 34 H 1.09004 * 109.47189 * 270.31214 * 11 10 9 35 35 H 1.09005 * 109.46837 * 30.30975 * 11 10 9 36 36 H 1.08998 * 109.47318 * 150.30815 * 11 10 9 37 37 H 1.07999 * 126.43111 * 179.78531 * 12 10 9 38 38 H 1.09004 * 109.87932 * 239.52049 * 15 5 4 39 39 H 1.08999 * 109.88179 * 118.35799 * 15 5 4 40 40 H 1.09000 * 109.47486 * 171.15768 * 18 16 15 41 41 H 1.09001 * 109.47362 * 51.15045 * 18 16 15 42 42 H 1.08993 * 109.46955 * 300.00075 * 19 18 16 43 43 H 1.09000 * 109.47050 * 59.99904 * 19 18 16 44 44 H 0.97010 * 119.99909 * 359.97438 * 20 19 18 45 45 H 0.97001 * 119.99731 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0899 -0.8074 -1.2004 5 7 3.4298 -1.2474 -0.7705 6 6 4.4510 -1.5690 -1.5892 7 8 5.5168 -1.9210 -1.1220 8 6 4.2756 -1.4934 -3.0535 9 7 3.1803 -1.1354 -3.6937 10 7 3.3760 -1.1778 -4.9627 11 6 2.3749 -0.8406 -5.9777 12 6 4.6425 -1.5858 -5.2263 13 6 5.2498 -1.7976 -4.0342 14 17 6.8803 -2.3297 -3.7657 15 6 3.4671 -1.2781 0.6988 16 6 2.0862 -0.8079 1.2022 17 1 1.4450 -1.6614 1.4228 18 6 2.2349 0.0876 2.4338 19 6 2.7237 -0.7500 3.6173 20 7 2.8668 0.1076 4.7964 21 6 3.2950 -0.4254 5.9828 22 1 3.5268 -1.4781 6.0494 23 6 3.4300 0.3870 7.1002 24 7 3.1470 1.6699 7.0192 25 14 4.0135 -0.3403 8.7188 26 1 5.4947 -0.2630 8.7909 27 1 3.4224 0.4239 9.8465 28 1 3.5871 -1.7601 8.8058 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5733 -0.8530 31 1 -0.3633 -1.0252 -0.0700 32 1 2.1642 -0.1733 -2.0838 33 1 1.4552 -1.6695 -1.4053 34 1 1.8092 -1.7344 -6.2411 35 1 1.6965 -0.0848 -5.5818 36 1 2.8740 -0.4517 -6.8652 37 1 5.0839 -1.7165 -6.2033 38 1 4.2434 -0.6057 1.0641 39 1 3.6612 -2.2938 1.0436 40 1 1.2706 0.5332 2.6777 41 1 2.9572 0.8766 2.2242 42 1 2.0015 -1.5389 3.8268 43 1 3.6881 -1.1956 3.3733 44 1 2.6589 1.0532 4.7365 45 1 3.2417 2.2376 7.7999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104233419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:31 Heat of formation + Delta-G solvation = 53.621251 kcal Electronic energy + Delta-G solvation = -26960.704558 eV Core-core repulsion = 23041.403218 eV Total energy + Delta-G solvation = -3919.301340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.10114 -40.01198 -37.93566 -36.71638 -35.08095 -33.91929 -33.14483 -31.98467 -31.11835 -30.13860 -28.33710 -26.81633 -26.43816 -24.40334 -22.98680 -22.17501 -21.92154 -20.58102 -20.05265 -19.58730 -17.83501 -17.08878 -16.88303 -16.83209 -16.19757 -15.33625 -14.98904 -14.67491 -14.56461 -14.31249 -14.10124 -13.71511 -13.63310 -13.38973 -13.22230 -13.09091 -12.92473 -12.69467 -12.61602 -12.16869 -12.13017 -11.90828 -11.65054 -11.32866 -11.04075 -10.96541 -10.86250 -10.77805 -10.52798 -10.36347 -10.20786 -10.02954 -9.89457 -9.74351 -9.59311 -9.17405 -8.80178 -8.59941 -6.84853 -5.70131 -2.98267 1.16834 1.50091 1.55173 2.30306 2.90474 3.21665 3.49021 3.53828 3.55475 3.90331 4.19060 4.29201 4.46793 4.47481 4.61364 4.67485 4.75949 4.77492 4.81905 5.00294 5.25855 5.32206 5.40870 5.44819 5.56859 5.60365 5.62894 5.71851 5.82699 5.87251 5.95922 6.08009 6.08663 6.10226 6.22241 6.27534 6.39075 6.45749 6.48412 6.92164 6.96491 7.28443 7.47150 7.76849 8.11138 8.49281 9.60105 10.18991 10.53414 11.53025 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.002276 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.149290 B =12297.962062 C =13708.783287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 H 0.086 0.914 4 C 0.107 3.893 5 N -0.605 5.605 6 C 0.609 3.391 7 O -0.515 6.515 8 C 0.007 3.993 9 N -0.244 5.244 10 N -0.283 5.283 11 C 0.088 3.912 12 C -0.003 4.003 13 C -0.103 4.103 14 Cl -0.007 7.007 15 C 0.113 3.887 16 C -0.089 4.089 17 H 0.086 0.914 18 C -0.115 4.115 19 C 0.151 3.849 20 N -0.734 5.734 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.192 0.808 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.558 -4.948 -33.758 34.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.104 0.896 4 C -0.016 4.016 5 N -0.338 5.338 6 C 0.394 3.606 7 O -0.389 6.389 8 C -0.154 4.154 9 N -0.080 5.080 10 N -0.071 5.071 11 C -0.052 4.052 12 C -0.147 4.147 13 C -0.140 4.140 14 Cl 0.022 6.978 15 C -0.009 4.009 16 C -0.109 4.109 17 H 0.104 0.896 18 C -0.153 4.153 19 C 0.023 3.977 20 N -0.378 5.378 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.209 0.791 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.905 -4.957 -33.324 34.046 hybrid contribution 1.149 -0.341 0.617 1.348 sum -3.757 -5.298 -32.707 33.346 Atomic orbital electron populations 1.21670 0.93656 1.02005 1.02250 1.22491 0.96248 0.99559 0.93948 0.89602 1.22591 0.82563 0.98475 0.97941 1.48267 1.12406 1.65795 1.07351 1.16380 0.83163 0.78324 0.82713 1.90871 1.25419 1.47204 1.75377 1.21855 0.90532 1.08006 0.94994 1.73749 1.24217 1.19311 0.90737 1.45451 1.10321 1.46631 1.04726 1.22264 0.90742 1.03469 0.88713 1.22629 0.86131 1.06024 0.99871 1.20842 0.90419 1.10235 0.92552 1.98378 1.14645 1.88287 1.96495 1.22164 0.98502 1.02314 0.77879 1.22291 0.94971 0.98832 0.94769 0.89557 1.21734 1.01979 0.98078 0.93483 1.20691 0.97167 0.93222 0.86576 1.42370 1.80828 1.08399 1.06224 1.19247 1.36250 0.93690 0.87570 0.91199 1.24742 1.02642 0.95671 0.98160 1.69665 1.55407 1.03854 1.29500 0.86183 0.78370 0.77957 0.83674 1.21723 1.21819 1.20777 0.91619 0.92621 0.92460 0.89328 0.91494 0.89298 0.88084 0.88278 0.79117 0.90457 0.90996 0.91319 0.91673 0.96442 0.96248 0.78348 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.32 37.16 0.35 -0.87 16 2 C -0.10 -1.10 3.10 -88.35 -0.27 -1.37 16 3 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 4 C 0.11 1.16 5.63 -2.41 -0.01 1.14 16 5 N -0.60 -8.34 3.33 -171.56 -0.57 -8.91 16 6 C 0.61 9.36 7.85 -12.41 -0.10 9.26 16 7 O -0.52 -9.48 16.20 5.30 0.09 -9.40 16 8 C 0.01 0.09 6.96 -82.76 -0.58 -0.48 16 9 N -0.24 -2.48 9.09 33.42 0.30 -2.18 16 10 N -0.28 -1.95 3.72 -67.94 -0.25 -2.20 16 11 C 0.09 0.14 11.32 59.84 0.68 0.82 16 12 C 0.00 -0.02 11.49 -16.86 -0.19 -0.21 16 13 C -0.10 -1.15 6.80 -39.32 -0.27 -1.42 16 14 Cl -0.01 -0.08 28.18 -51.86 -1.46 -1.54 16 15 C 0.11 1.64 5.73 -3.07 -0.02 1.62 16 16 C -0.09 -1.15 2.42 -88.79 -0.21 -1.36 16 17 H 0.09 1.07 8.04 -51.93 -0.42 0.65 16 18 C -0.11 -1.83 4.72 -26.73 -0.13 -1.95 16 19 C 0.15 3.10 6.13 -4.04 -0.02 3.08 16 20 N -0.73 -19.26 5.60 -59.91 -0.34 -19.60 16 21 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 22 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 23 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 24 N -0.94 -29.02 13.06 55.49 0.72 -28.29 16 25 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.09 0.92 6.20 -51.93 -0.32 0.59 16 33 H 0.07 0.68 7.99 -51.93 -0.41 0.26 16 34 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 35 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 36 H 0.10 -0.09 8.13 -51.93 -0.42 -0.51 16 37 H 0.19 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.08 1.25 7.73 -51.93 -0.40 0.85 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.08 8.00 -51.93 -0.42 0.67 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.41 7.58 -51.93 -0.39 0.02 16 44 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16 45 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 385.65 15.07 5.81 5.81 Total: -1.00 -36.51 385.65 -8.61 -45.12 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.87 Total: 2.49 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.03 Total: 0.65 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.13 Total: -61.19 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.46 Total: -1.54 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.51 -8.61 -45.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104233419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.738 kcal (2) G-P(sol) polarization free energy of solvation -36.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds