Wall clock time and date at job start Sat Apr 11 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.91541 * 2 1 4 4 C 1.55124 * 111.15891 * 236.07413 * 2 1 3 5 5 N 1.47432 * 104.93692 * 205.13156 * 4 2 1 6 6 C 1.34778 * 125.64292 * 203.96487 * 5 4 2 7 7 O 1.21576 * 119.99749 * 180.02562 * 6 5 4 8 8 C 1.47669 * 120.00448 * 0.04566 * 6 5 4 9 9 N 1.31826 * 126.45616 * 359.68411 * 8 6 5 10 10 N 1.28473 * 110.13291 * 179.85937 * 9 8 6 11 11 C 1.46493 * 124.93664 * 180.14847 * 10 9 8 12 12 C 1.35644 * 110.12853 * 0.41730 * 10 9 8 13 13 C 1.35457 * 107.13302 * 359.74785 * 12 10 9 14 14 Cl 1.73606 * 127.23694 * 180.02562 * 13 12 10 15 15 C 1.47017 * 108.70437 * 24.00488 * 5 4 2 16 16 C 1.54318 * 107.27462 * 358.93764 * 15 5 4 17 17 H 1.08998 * 110.72058 * 96.34446 * 16 15 5 18 18 C 1.52999 * 110.72472 * 219.44863 * 16 15 5 19 19 C 1.53006 * 109.46623 * 291.15597 * 18 16 15 20 20 N 1.46500 * 109.46998 * 179.97438 * 19 18 16 21 21 C 1.36931 * 120.00396 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99774 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00545 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99833 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00256 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47136 * 89.99695 * 25 23 21 27 27 H 1.48503 * 109.47098 * 209.99762 * 25 23 21 28 28 H 1.48496 * 109.47087 * 329.99418 * 25 23 21 29 29 H 1.09000 * 109.46825 * 296.09903 * 1 2 3 30 30 H 1.09007 * 109.46961 * 56.09603 * 1 2 3 31 31 H 1.08993 * 109.47349 * 176.09561 * 1 2 3 32 32 H 1.08996 * 110.42102 * 86.20771 * 4 2 1 33 33 H 1.09002 * 110.30029 * 323.99385 * 4 2 1 34 34 H 1.09004 * 109.47189 * 270.31214 * 11 10 9 35 35 H 1.09005 * 109.46837 * 30.30975 * 11 10 9 36 36 H 1.08998 * 109.47318 * 150.30815 * 11 10 9 37 37 H 1.07999 * 126.43111 * 179.78531 * 12 10 9 38 38 H 1.09004 * 109.87932 * 239.52049 * 15 5 4 39 39 H 1.08999 * 109.88179 * 118.35799 * 15 5 4 40 40 H 1.09000 * 109.47486 * 171.15768 * 18 16 15 41 41 H 1.09001 * 109.47362 * 51.15045 * 18 16 15 42 42 H 1.08993 * 109.46955 * 300.00075 * 19 18 16 43 43 H 1.09000 * 109.47050 * 59.99904 * 19 18 16 44 44 H 0.97010 * 119.99909 * 359.97438 * 20 19 18 45 45 H 0.97001 * 119.99731 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0899 -0.8074 -1.2004 5 7 3.4298 -1.2474 -0.7705 6 6 4.4510 -1.5690 -1.5892 7 8 5.5168 -1.9210 -1.1220 8 6 4.2756 -1.4934 -3.0535 9 7 3.1803 -1.1354 -3.6937 10 7 3.3760 -1.1778 -4.9627 11 6 2.3749 -0.8406 -5.9777 12 6 4.6425 -1.5858 -5.2263 13 6 5.2498 -1.7976 -4.0342 14 17 6.8803 -2.3297 -3.7657 15 6 3.4671 -1.2781 0.6988 16 6 2.0862 -0.8079 1.2022 17 1 1.4450 -1.6614 1.4228 18 6 2.2349 0.0876 2.4338 19 6 2.7237 -0.7500 3.6173 20 7 2.8668 0.1076 4.7964 21 6 3.2950 -0.4254 5.9828 22 1 3.5268 -1.4781 6.0494 23 6 3.4300 0.3870 7.1002 24 7 3.1470 1.6699 7.0192 25 14 4.0135 -0.3403 8.7188 26 1 5.4947 -0.2630 8.7909 27 1 3.4224 0.4239 9.8465 28 1 3.5871 -1.7601 8.8058 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5733 -0.8530 31 1 -0.3633 -1.0252 -0.0700 32 1 2.1642 -0.1733 -2.0838 33 1 1.4552 -1.6695 -1.4053 34 1 1.8092 -1.7344 -6.2411 35 1 1.6965 -0.0848 -5.5818 36 1 2.8740 -0.4517 -6.8652 37 1 5.0839 -1.7165 -6.2033 38 1 4.2434 -0.6057 1.0641 39 1 3.6612 -2.2938 1.0436 40 1 1.2706 0.5332 2.6777 41 1 2.9572 0.8766 2.2242 42 1 2.0015 -1.5389 3.8268 43 1 3.6881 -1.1956 3.3733 44 1 2.6589 1.0532 4.7365 45 1 3.2417 2.2376 7.7999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104233419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:30 Heat of formation + Delta-G solvation = 29.116086 kcal Electronic energy + Delta-G solvation = -26961.767182 eV Core-core repulsion = 23041.403218 eV Total energy + Delta-G solvation = -3920.363964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.77278 -41.09565 -39.09001 -37.53137 -36.86543 -34.83934 -34.22835 -33.43914 -31.96041 -31.61122 -29.28686 -27.93476 -27.28637 -25.97622 -24.35561 -23.36021 -22.64076 -21.82483 -21.07885 -20.57090 -19.15407 -18.57926 -17.78207 -17.56814 -17.19594 -16.65506 -16.35385 -15.81776 -15.60830 -15.46536 -15.36659 -15.10404 -14.72769 -14.48021 -14.32138 -13.91836 -13.81077 -13.58473 -13.50055 -13.30547 -13.07428 -12.90564 -12.83506 -12.74056 -12.61129 -12.42309 -12.25025 -12.08330 -11.89681 -11.79741 -11.62567 -11.54789 -11.17288 -11.10290 -10.93208 -10.40703 -9.94991 -9.66449 -9.00946 -7.96351 -5.25298 0.33552 0.81862 0.93781 1.45879 1.48504 1.56757 1.60490 1.98141 2.16619 2.55270 3.18944 3.37017 3.47549 3.53981 3.65066 3.69808 3.87830 4.13410 4.24570 4.30817 4.31656 4.43173 4.45529 4.46322 4.52456 4.59318 4.66138 4.72127 4.75886 4.79672 4.80665 4.88162 4.93692 5.04094 5.18197 5.25167 5.28571 5.35109 5.42284 5.48724 5.54047 5.66468 6.26694 6.36856 6.61198 7.01407 7.32370 8.08688 8.32166 9.27364 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.002276 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.149290 B =12297.962062 C =13708.783287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 H 0.081 0.919 4 C 0.113 3.887 5 N -0.607 5.607 6 C 0.599 3.401 7 O -0.562 6.562 8 C -0.028 4.028 9 N -0.245 5.245 10 N -0.268 5.268 11 C 0.074 3.926 12 C 0.025 3.975 13 C -0.135 4.135 14 Cl -0.026 7.026 15 C 0.113 3.887 16 C -0.078 4.078 17 H 0.099 0.901 18 C -0.099 4.099 19 C 0.149 3.851 20 N -0.748 5.748 21 C -0.247 4.247 22 H 0.073 0.927 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.975 3.025 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.269 1.269 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.236 0.764 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.024 0.976 43 H 0.012 0.988 44 H 0.374 0.626 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.462 -5.338 -36.569 37.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.009 4.009 5 N -0.339 5.339 6 C 0.387 3.613 7 O -0.439 6.439 8 C -0.187 4.187 9 N -0.083 5.083 10 N -0.057 5.057 11 C -0.063 4.063 12 C -0.120 4.120 13 C -0.173 4.173 14 Cl 0.003 6.997 15 C -0.009 4.009 16 C -0.097 4.097 17 H 0.117 0.883 18 C -0.137 4.137 19 C 0.023 3.977 20 N -0.391 5.391 21 C -0.379 4.379 22 H 0.091 0.909 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.803 3.197 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.194 1.194 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.151 0.849 37 H 0.252 0.748 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.030 0.970 44 H 0.206 0.794 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.859 -5.365 -36.175 37.209 hybrid contribution 1.680 -0.219 1.321 2.149 sum -5.179 -5.584 -34.854 35.677 Atomic orbital electron populations 1.21656 0.91582 1.02999 1.02874 1.22463 0.97773 0.98764 0.92294 0.90077 1.22715 0.81018 0.99051 0.98118 1.48375 1.13400 1.65323 1.06787 1.16889 0.82709 0.77526 0.84178 1.90822 1.27145 1.49387 1.76559 1.21520 0.92343 1.11079 0.93757 1.73660 1.23159 1.19164 0.92293 1.46059 1.11107 1.44175 1.04375 1.22814 0.90377 1.04761 0.88342 1.23221 0.85564 1.03016 1.00180 1.21107 0.89901 1.12430 0.93843 1.98360 1.16031 1.88632 1.96717 1.22047 0.98821 1.01095 0.78971 1.22181 0.94291 0.99013 0.94255 0.88272 1.21560 1.01658 0.97587 0.92910 1.20859 0.97009 0.93380 0.86452 1.42602 1.80704 1.08579 1.07183 1.19641 1.35564 0.93958 0.88764 0.90904 1.25602 1.03470 0.96160 1.01716 1.69817 1.56854 1.05096 1.30262 0.85119 0.77608 0.77730 0.79194 1.21526 1.21770 1.19387 0.92188 0.90631 0.91496 0.88416 0.90141 0.87432 0.87440 0.84913 0.74753 0.93020 0.92075 0.90575 0.92713 0.95835 0.97009 0.79400 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.32 71.98 0.67 -1.31 16 2 C -0.09 -1.85 3.10 -9.33 -0.03 -1.88 16 3 H 0.08 1.71 8.05 -2.39 -0.02 1.69 16 4 C 0.11 2.27 5.63 86.93 0.49 2.76 16 5 N -0.61 -17.07 3.33 -814.96 -2.71 -19.79 16 6 C 0.60 19.23 7.85 86.73 0.68 19.91 16 7 O -0.56 -22.17 16.20 -3.96 -0.06 -22.23 16 8 C -0.03 -0.72 6.96 42.45 0.30 -0.42 16 9 N -0.24 -4.50 9.09 -48.17 -0.44 -4.94 16 10 N -0.27 -2.79 3.72 -368.87 -1.37 -4.16 16 11 C 0.07 -0.10 11.32 127.77 1.45 1.35 16 12 C 0.02 0.28 11.49 83.46 0.96 1.24 16 13 C -0.14 -2.93 6.80 22.44 0.15 -2.77 16 14 Cl -0.03 -0.63 28.18 -2.72 -0.08 -0.71 16 15 C 0.11 3.42 5.73 86.73 0.50 3.92 16 16 C -0.08 -1.97 2.42 -9.61 -0.02 -2.00 16 17 H 0.10 2.31 8.04 -2.39 -0.02 2.29 16 18 C -0.10 -3.18 4.72 30.60 0.14 -3.04 16 19 C 0.15 6.24 6.13 86.38 0.53 6.77 16 20 N -0.75 -40.05 5.60 -343.46 -1.92 -41.97 16 21 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 22 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 23 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 24 N -0.97 -61.13 13.06 21.65 0.28 -60.84 16 25 Si 0.97 47.83 29.55 68.60 2.03 49.86 16 26 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 27 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 28 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 32 H 0.10 1.83 6.20 -2.39 -0.01 1.82 16 33 H 0.08 1.44 7.99 -2.39 -0.02 1.42 16 34 H 0.11 -0.42 8.14 -2.38 -0.02 -0.44 16 35 H 0.11 -0.19 8.14 -2.38 -0.02 -0.21 16 36 H 0.13 -0.98 8.13 -2.39 -0.02 -1.00 16 37 H 0.24 0.34 8.06 -2.91 -0.02 0.32 16 38 H 0.05 1.80 7.73 -2.38 -0.02 1.78 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 1.87 8.00 -2.39 -0.02 1.85 16 42 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.01 0.52 7.58 -2.39 -0.02 0.50 16 44 H 0.37 21.01 7.67 -92.70 -0.71 20.30 16 45 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -82.88 385.65 3.14 -79.75 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.29 Total: 18.35 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 7.12 Total: 6.68 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -6.16 Total: -131.70 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.06 Total: -22.23 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -82.88 3.14 -79.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104233419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.865 kcal (2) G-P(sol) polarization free energy of solvation -82.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds