Wall clock time and date at job start Sat Apr 11 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.91880 * 2 1 4 4 C 1.54914 * 111.00394 * 236.09260 * 2 1 3 5 5 N 1.47420 * 104.83216 * 204.92102 * 4 2 1 6 6 C 1.34780 * 125.64743 * 204.16816 * 5 4 2 7 7 O 1.21617 * 119.99694 * 355.39949 * 6 5 4 8 8 C 1.47305 * 119.99924 * 175.40374 * 6 5 4 9 9 C 1.41338 * 126.43518 * 5.59068 * 8 6 5 10 10 N 1.30413 * 108.04456 * 179.85417 * 9 8 6 11 11 N 1.39927 * 108.96018 * 0.41633 * 10 9 8 12 12 C 1.46497 * 125.74733 * 179.73599 * 11 10 9 13 13 C 1.34350 * 108.50035 * 359.72749 * 11 10 9 14 14 Cl 1.73602 * 126.31665 * 179.97438 * 13 11 10 15 15 C 1.47022 * 108.70602 * 24.12851 * 5 4 2 16 16 C 1.54321 * 107.26894 * 358.94130 * 15 5 4 17 17 H 1.09003 * 110.72118 * 96.35036 * 16 15 5 18 18 C 1.53001 * 110.72219 * 219.44058 * 16 15 5 19 19 C 1.52999 * 109.47069 * 293.54965 * 18 16 15 20 20 N 1.46506 * 109.46950 * 179.97438 * 19 18 16 21 21 C 1.36929 * 119.99849 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00355 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00087 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99852 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00159 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46971 * 179.97438 * 25 23 21 27 27 H 1.48491 * 109.47326 * 59.99589 * 25 23 21 28 28 H 1.48505 * 109.47016 * 299.99449 * 25 23 21 29 29 H 1.09003 * 109.47361 * 296.10540 * 1 2 3 30 30 H 1.09004 * 109.47165 * 56.10080 * 1 2 3 31 31 H 1.09005 * 109.47660 * 176.09780 * 1 2 3 32 32 H 1.09000 * 110.36228 * 86.08138 * 4 2 1 33 33 H 1.09001 * 110.46005 * 323.80540 * 4 2 1 34 34 H 1.07999 * 125.97784 * 0.03021 * 9 8 6 35 35 H 1.09000 * 109.46920 * 269.99638 * 12 11 10 36 36 H 1.09001 * 109.47677 * 29.99765 * 12 11 10 37 37 H 1.08997 * 109.46974 * 149.99746 * 12 11 10 38 38 H 1.08992 * 109.88227 * 239.52648 * 15 5 4 39 39 H 1.08998 * 109.88331 * 118.35855 * 15 5 4 40 40 H 1.08998 * 109.47401 * 173.54566 * 18 16 15 41 41 H 1.09006 * 109.46741 * 53.55085 * 18 16 15 42 42 H 1.08998 * 109.46849 * 59.99770 * 19 18 16 43 43 H 1.08998 * 109.47100 * 299.99759 * 19 18 16 44 44 H 0.96996 * 119.99734 * 359.97438 * 20 19 18 45 45 H 0.96999 * 119.99937 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8068 -1.2003 5 7 3.4270 -1.2433 -0.7732 6 6 4.4480 -1.5605 -1.5939 7 8 4.2772 -1.5788 -2.7979 8 6 5.7706 -1.8852 -1.0325 9 6 6.0924 -2.0135 0.3378 10 7 7.3591 -2.3099 0.4293 11 7 7.9047 -2.3755 -0.8576 12 6 9.3015 -2.6768 -1.1806 13 6 6.9318 -2.1157 -1.7469 14 17 7.1015 -2.0760 -3.4742 15 6 3.4673 -1.2743 0.6961 16 6 2.0861 -0.8079 1.2023 17 1 1.4477 -1.6632 1.4240 18 6 2.2349 0.0876 2.4338 19 6 2.7847 -0.7362 3.6000 20 7 2.9277 0.1215 4.7791 21 6 3.4061 -0.4003 5.9512 22 1 3.6777 -1.4441 6.0067 23 6 3.5412 0.4122 7.0686 24 7 3.2098 1.6843 7.0013 25 14 4.1932 -0.2997 8.6678 26 1 4.2416 0.7662 9.7007 27 1 5.5593 -0.8388 8.4491 28 1 3.2972 -1.3922 9.1250 29 1 -0.3634 0.4522 0.9228 30 1 -0.3634 0.5732 -0.8530 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1560 -0.1721 -2.0836 33 1 1.4524 -1.6705 -1.4042 34 1 5.4083 -1.8907 1.1644 35 1 9.8743 -1.7501 -1.2158 36 1 9.7180 -3.3326 -0.4160 37 1 9.3515 -3.1719 -2.1503 38 1 4.2424 -0.5999 1.0600 39 1 3.6649 -2.2895 1.0402 40 1 1.2618 0.4970 2.7051 41 1 2.9223 0.9032 2.2091 42 1 3.7578 -1.1455 3.3286 43 1 2.0973 -1.5517 3.8247 44 1 2.6842 1.0591 4.7292 45 1 2.8709 2.0538 6.1710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104355212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:33 Heat of formation + Delta-G solvation = 53.230147 kcal Electronic energy + Delta-G solvation = -27354.916389 eV Core-core repulsion = 23435.598089 eV Total energy + Delta-G solvation = -3919.318300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.78795 -40.02495 -37.95507 -37.23126 -35.31190 -34.09230 -33.23449 -32.27440 -30.50479 -30.04317 -28.01184 -27.02881 -26.20149 -24.27189 -22.99655 -22.16506 -21.59715 -20.69302 -20.14601 -19.77694 -17.77512 -17.26762 -16.60233 -16.50446 -16.20283 -15.48046 -14.90423 -14.80236 -14.55227 -14.45792 -13.99889 -13.72120 -13.55896 -13.46059 -13.32374 -13.21558 -13.03824 -12.62557 -12.58551 -12.35982 -12.26857 -12.06920 -11.75887 -11.47907 -11.23762 -11.09806 -10.79069 -10.76345 -10.53245 -10.49196 -10.29132 -9.97130 -9.93662 -9.82025 -9.15029 -9.08850 -8.87208 -8.66522 -6.99866 -6.09568 -3.09237 0.95808 0.98936 1.85261 2.15980 2.86313 3.22450 3.52554 3.56142 3.73502 3.98092 4.30235 4.41321 4.55691 4.60063 4.67791 4.69768 4.73564 4.88605 4.97920 5.05704 5.08388 5.23160 5.31921 5.35782 5.49977 5.53952 5.58295 5.65275 5.70427 5.74560 5.91300 5.93686 5.97786 6.04013 6.10525 6.13014 6.19661 6.23754 6.34066 6.72049 6.77425 7.06647 7.41237 7.81537 8.11504 8.76975 9.24298 10.10621 10.25202 11.39200 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010378 B = 0.003027 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.299162 B = 9249.250621 C =11675.899549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.087 0.913 4 C 0.116 3.884 5 N -0.613 5.613 6 C 0.609 3.391 7 O -0.539 6.539 8 C -0.268 4.268 9 C 0.081 3.919 10 N -0.268 5.268 11 N -0.355 5.355 12 C 0.090 3.910 13 C 0.182 3.818 14 Cl 0.026 6.974 15 C 0.094 3.906 16 C -0.089 4.089 17 H 0.089 0.911 18 C -0.118 4.118 19 C 0.157 3.843 20 N -0.745 5.745 21 C -0.331 4.331 22 H 0.064 0.936 23 C -0.046 4.046 24 N -0.945 5.945 25 Si 1.079 2.921 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.295 1.295 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.210 0.790 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.366 0.634 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.085 -8.031 -21.884 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.105 0.895 4 C -0.007 4.007 5 N -0.346 5.346 6 C 0.399 3.601 7 O -0.417 6.417 8 C -0.284 4.284 9 C -0.105 4.105 10 N -0.089 5.089 11 N -0.136 5.136 12 C -0.051 4.051 13 C 0.023 3.977 14 Cl 0.055 6.945 15 C -0.029 4.029 16 C -0.108 4.108 17 H 0.107 0.893 18 C -0.156 4.156 19 C 0.030 3.970 20 N -0.391 5.391 21 C -0.462 4.462 22 H 0.082 0.918 23 C -0.243 4.243 24 N -0.590 5.590 25 Si 0.910 3.090 26 H -0.210 1.210 27 H -0.222 1.222 28 H -0.223 1.223 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.226 0.774 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.199 0.801 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.674 -8.250 -20.373 22.971 hybrid contribution -0.892 -0.005 -2.204 2.378 sum 5.782 -8.255 -22.577 24.725 Atomic orbital electron populations 1.21687 0.93547 1.02175 1.02343 1.22448 0.96389 0.99541 0.93737 0.89492 1.22294 0.82377 0.98258 0.97736 1.48156 1.12138 1.67321 1.06987 1.16617 0.81808 0.76557 0.85153 1.90800 1.83439 1.53619 1.13797 1.19783 0.94101 1.21654 0.92885 1.24845 0.93283 0.95854 0.96545 1.77481 1.10837 1.24009 0.96536 1.48660 1.09057 1.52464 1.03454 1.22119 0.76195 1.03423 1.03335 1.22012 0.89915 1.00359 0.85448 1.98446 1.97491 1.96277 1.02332 1.22571 0.99247 1.01579 0.79478 1.22280 0.94842 0.98969 0.94723 0.89279 1.21776 1.01983 0.98165 0.93681 1.20621 0.96907 0.93183 0.86324 1.42372 1.79628 1.08800 1.08260 1.20027 1.39933 0.96045 0.90241 0.91770 1.25769 1.01294 0.95548 1.01701 1.70885 1.46838 1.12647 1.28672 0.83256 0.75625 0.74596 0.75542 1.21042 1.22235 1.22260 0.91671 0.92433 0.92329 0.90467 0.91295 0.77358 0.89556 0.87954 0.88967 0.90297 0.90737 0.91280 0.91705 0.96412 0.96263 0.80056 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.31 37.16 0.35 -0.84 16 2 C -0.10 -1.01 3.09 -88.47 -0.27 -1.28 16 3 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 4 C 0.12 1.24 6.36 -2.53 -0.02 1.22 16 5 N -0.61 -7.51 3.33 -171.83 -0.57 -8.08 16 6 C 0.61 8.61 7.83 -12.57 -0.10 8.52 16 7 O -0.54 -8.78 15.96 5.26 0.08 -8.70 16 8 C -0.27 -3.55 6.09 -105.02 -0.64 -4.19 16 9 C 0.08 1.03 10.44 -16.98 -0.18 0.85 16 10 N -0.27 -3.51 12.49 30.87 0.39 -3.13 16 11 N -0.35 -3.89 3.98 -64.32 -0.26 -4.15 16 12 C 0.09 0.56 11.28 59.85 0.67 1.23 16 13 C 0.18 2.19 7.53 -16.44 -0.12 2.07 16 14 Cl 0.03 0.28 27.36 -51.86 -1.42 -1.14 16 15 C 0.09 1.06 3.73 -3.07 -0.01 1.05 16 16 C -0.09 -0.99 2.45 -88.79 -0.22 -1.20 16 17 H 0.09 0.96 8.04 -51.93 -0.42 0.54 16 18 C -0.12 -1.67 4.72 -26.73 -0.13 -1.80 16 19 C 0.16 2.95 6.11 -4.04 -0.02 2.92 16 20 N -0.75 -18.42 5.60 -59.91 -0.34 -18.76 16 21 C -0.33 -9.32 9.99 -15.06 -0.15 -9.47 16 22 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 23 C -0.05 -1.33 5.50 -17.43 -0.10 -1.42 16 24 N -0.94 -29.18 13.70 55.49 0.76 -28.42 16 25 Si 1.08 25.87 29.92 -169.99 -5.09 20.78 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.30 -6.75 7.11 56.52 0.40 -6.34 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 33 H 0.07 0.70 7.99 -51.93 -0.41 0.28 16 34 H 0.21 2.36 4.52 -52.49 -0.24 2.12 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.40 7.77 -51.93 -0.40 0.00 16 38 H 0.08 0.93 6.36 -51.93 -0.33 0.60 16 39 H 0.07 0.78 7.09 -51.93 -0.37 0.42 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 42 H 0.02 0.33 7.49 -51.93 -0.39 -0.06 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.37 9.26 6.50 -40.82 -0.27 9.00 16 45 H 0.25 7.71 6.77 -40.82 -0.28 7.43 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -35.30 379.56 -8.17 -43.47 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.52 Total: 4.75 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -0.93 Total: -2.34 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.02 Total: -62.54 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.09 Total: 20.78 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.42 Total: -1.14 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.30 -8.17 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104355212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.699 kcal (2) G-P(sol) polarization free energy of solvation -35.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds