Wall clock time and date at job start Sat Apr 11 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.91880 * 2 1 4 4 C 1.54914 * 111.00394 * 236.09260 * 2 1 3 5 5 N 1.47420 * 104.83216 * 204.92102 * 4 2 1 6 6 C 1.34780 * 125.64743 * 204.16816 * 5 4 2 7 7 O 1.21617 * 119.99694 * 355.39949 * 6 5 4 8 8 C 1.47305 * 119.99924 * 175.40374 * 6 5 4 9 9 C 1.41338 * 126.43518 * 5.59068 * 8 6 5 10 10 N 1.30413 * 108.04456 * 179.85417 * 9 8 6 11 11 N 1.39927 * 108.96018 * 0.41633 * 10 9 8 12 12 C 1.46497 * 125.74733 * 179.73599 * 11 10 9 13 13 C 1.34350 * 108.50035 * 359.72749 * 11 10 9 14 14 Cl 1.73602 * 126.31665 * 179.97438 * 13 11 10 15 15 C 1.47022 * 108.70602 * 24.12851 * 5 4 2 16 16 C 1.54321 * 107.26894 * 358.94130 * 15 5 4 17 17 H 1.09003 * 110.72118 * 96.35036 * 16 15 5 18 18 C 1.53001 * 110.72219 * 219.44058 * 16 15 5 19 19 C 1.52999 * 109.47069 * 293.54965 * 18 16 15 20 20 N 1.46506 * 109.46950 * 179.97438 * 19 18 16 21 21 C 1.36929 * 119.99849 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00355 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00087 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99852 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00159 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46971 * 179.97438 * 25 23 21 27 27 H 1.48491 * 109.47326 * 59.99589 * 25 23 21 28 28 H 1.48505 * 109.47016 * 299.99449 * 25 23 21 29 29 H 1.09003 * 109.47361 * 296.10540 * 1 2 3 30 30 H 1.09004 * 109.47165 * 56.10080 * 1 2 3 31 31 H 1.09005 * 109.47660 * 176.09780 * 1 2 3 32 32 H 1.09000 * 110.36228 * 86.08138 * 4 2 1 33 33 H 1.09001 * 110.46005 * 323.80540 * 4 2 1 34 34 H 1.07999 * 125.97784 * 0.03021 * 9 8 6 35 35 H 1.09000 * 109.46920 * 269.99638 * 12 11 10 36 36 H 1.09001 * 109.47677 * 29.99765 * 12 11 10 37 37 H 1.08997 * 109.46974 * 149.99746 * 12 11 10 38 38 H 1.08992 * 109.88227 * 239.52648 * 15 5 4 39 39 H 1.08998 * 109.88331 * 118.35855 * 15 5 4 40 40 H 1.08998 * 109.47401 * 173.54566 * 18 16 15 41 41 H 1.09006 * 109.46741 * 53.55085 * 18 16 15 42 42 H 1.08998 * 109.46849 * 59.99770 * 19 18 16 43 43 H 1.08998 * 109.47100 * 299.99759 * 19 18 16 44 44 H 0.96996 * 119.99734 * 359.97438 * 20 19 18 45 45 H 0.96999 * 119.99937 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8068 -1.2003 5 7 3.4270 -1.2433 -0.7732 6 6 4.4480 -1.5605 -1.5939 7 8 4.2772 -1.5788 -2.7979 8 6 5.7706 -1.8852 -1.0325 9 6 6.0924 -2.0135 0.3378 10 7 7.3591 -2.3099 0.4293 11 7 7.9047 -2.3755 -0.8576 12 6 9.3015 -2.6768 -1.1806 13 6 6.9318 -2.1157 -1.7469 14 17 7.1015 -2.0760 -3.4742 15 6 3.4673 -1.2743 0.6961 16 6 2.0861 -0.8079 1.2023 17 1 1.4477 -1.6632 1.4240 18 6 2.2349 0.0876 2.4338 19 6 2.7847 -0.7362 3.6000 20 7 2.9277 0.1215 4.7791 21 6 3.4061 -0.4003 5.9512 22 1 3.6777 -1.4441 6.0067 23 6 3.5412 0.4122 7.0686 24 7 3.2098 1.6843 7.0013 25 14 4.1932 -0.2997 8.6678 26 1 4.2416 0.7662 9.7007 27 1 5.5593 -0.8388 8.4491 28 1 3.2972 -1.3922 9.1250 29 1 -0.3634 0.4522 0.9228 30 1 -0.3634 0.5732 -0.8530 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1560 -0.1721 -2.0836 33 1 1.4524 -1.6705 -1.4042 34 1 5.4083 -1.8907 1.1644 35 1 9.8743 -1.7501 -1.2158 36 1 9.7180 -3.3326 -0.4160 37 1 9.3515 -3.1719 -2.1503 38 1 4.2424 -0.5999 1.0600 39 1 3.6649 -2.2895 1.0402 40 1 1.2618 0.4970 2.7051 41 1 2.9223 0.9032 2.2091 42 1 3.7578 -1.1455 3.3286 43 1 2.0973 -1.5517 3.8247 44 1 2.6842 1.0591 4.7292 45 1 2.8709 2.0538 6.1710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104355212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:32 Heat of formation + Delta-G solvation = 30.277193 kcal Electronic energy + Delta-G solvation = -27355.911704 eV Core-core repulsion = 23435.598089 eV Total energy + Delta-G solvation = -3920.313614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.69916 -40.99143 -39.02472 -38.10768 -37.04808 -34.99052 -34.47860 -33.51855 -31.64070 -31.41369 -28.74264 -28.39473 -26.97880 -25.82938 -24.51472 -23.36432 -22.46774 -21.82776 -21.08768 -20.75134 -19.32469 -18.64222 -17.55743 -17.45645 -17.07358 -16.61777 -16.45374 -15.86529 -15.79544 -15.62224 -15.36537 -15.04507 -14.88951 -14.51518 -14.28920 -13.90180 -13.88237 -13.62783 -13.48172 -13.26936 -13.20973 -12.94367 -12.81111 -12.72247 -12.67384 -12.41041 -12.20929 -12.00522 -11.88781 -11.67803 -11.63997 -11.41673 -11.07463 -11.01484 -10.86717 -10.67113 -10.05444 -9.61989 -9.06085 -8.36192 -5.29645 0.03345 0.10569 0.87787 1.40384 1.60861 1.70658 1.86802 1.91848 2.19669 2.74315 3.15039 3.41509 3.43553 3.50421 3.63331 3.70729 3.79344 4.03296 4.08360 4.21450 4.23997 4.27415 4.31515 4.41955 4.46515 4.54073 4.54491 4.63565 4.74957 4.77440 4.82710 4.90505 4.98872 5.02843 5.13641 5.24613 5.28316 5.32902 5.34864 5.40417 5.52887 5.63111 6.15009 6.40914 6.53974 7.07769 7.14573 8.05538 8.15341 9.16344 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010378 B = 0.003027 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.299162 B = 9249.250621 C =11675.899549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 H 0.082 0.918 4 C 0.114 3.886 5 N -0.611 5.611 6 C 0.605 3.395 7 O -0.567 6.567 8 C -0.289 4.289 9 C 0.080 3.920 10 N -0.291 5.291 11 N -0.347 5.347 12 C 0.076 3.924 13 C 0.179 3.821 14 Cl 0.038 6.962 15 C 0.094 3.906 16 C -0.080 4.080 17 H 0.101 0.899 18 C -0.102 4.102 19 C 0.153 3.847 20 N -0.760 5.760 21 C -0.333 4.333 22 H 0.067 0.933 23 C -0.106 4.106 24 N -0.978 5.978 25 Si 1.125 2.875 26 H -0.294 1.294 27 H -0.278 1.278 28 H -0.277 1.277 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.216 0.784 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.025 0.975 43 H 0.021 0.979 44 H 0.360 0.640 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.372 -9.254 -22.477 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.101 0.899 4 C -0.007 4.007 5 N -0.343 5.343 6 C 0.395 3.605 7 O -0.448 6.448 8 C -0.306 4.306 9 C -0.105 4.105 10 N -0.113 5.113 11 N -0.129 5.129 12 C -0.062 4.062 13 C 0.018 3.982 14 Cl 0.066 6.934 15 C -0.029 4.029 16 C -0.099 4.099 17 H 0.119 0.881 18 C -0.140 4.140 19 C 0.027 3.973 20 N -0.405 5.405 21 C -0.464 4.464 22 H 0.085 0.915 23 C -0.297 4.297 24 N -0.626 5.626 25 Si 0.950 3.050 26 H -0.220 1.220 27 H -0.204 1.204 28 H -0.203 1.203 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.232 0.768 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.192 0.808 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.959 -9.509 -20.993 24.074 hybrid contribution -0.930 0.337 -2.121 2.340 sum 6.028 -9.172 -23.114 25.588 Atomic orbital electron populations 1.21677 0.92168 1.02953 1.02654 1.22376 0.97389 0.98877 0.92444 0.89928 1.22403 0.81796 0.98693 0.97852 1.48197 1.12372 1.66553 1.07208 1.16787 0.82371 0.76349 0.84959 1.90771 1.83964 1.55207 1.14838 1.19855 0.94269 1.23076 0.93351 1.24930 0.93369 0.95682 0.96568 1.77415 1.11130 1.24798 0.97912 1.48992 1.10230 1.51084 1.02555 1.22561 0.74034 1.04790 1.04821 1.22139 0.90045 0.99901 0.86132 1.98447 1.97449 1.96181 1.01315 1.22593 0.99150 1.02085 0.79030 1.22182 0.95101 0.98906 0.93711 0.88123 1.21589 1.01399 0.97828 0.93179 1.20842 0.97455 0.93096 0.85876 1.42636 1.79454 1.09200 1.09209 1.20405 1.38436 0.96174 0.91406 0.91465 1.27162 1.01935 0.95380 1.05206 1.70991 1.49228 1.13955 1.28426 0.82661 0.76224 0.74220 0.71890 1.22033 1.20401 1.20302 0.92078 0.91304 0.91465 0.90847 0.90244 0.76753 0.87977 0.86739 0.86963 0.90890 0.89726 0.91320 0.92226 0.95669 0.96118 0.80827 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.31 71.98 0.67 -1.35 16 2 C -0.09 -1.65 3.09 -9.40 -0.03 -1.68 16 3 H 0.08 1.59 8.05 -2.39 -0.02 1.57 16 4 C 0.11 2.28 6.36 86.86 0.55 2.83 16 5 N -0.61 -14.39 3.33 -815.81 -2.71 -17.11 16 6 C 0.61 16.85 7.83 86.63 0.68 17.53 16 7 O -0.57 -18.35 15.96 -4.09 -0.07 -18.41 16 8 C -0.29 -7.53 6.09 -20.12 -0.12 -7.65 16 9 C 0.08 1.99 10.44 85.67 0.89 2.88 16 10 N -0.29 -7.41 12.49 -56.26 -0.70 -8.12 16 11 N -0.35 -7.21 3.98 -357.42 -1.42 -8.63 16 12 C 0.08 0.81 11.28 127.77 1.44 2.25 16 13 C 0.18 4.17 7.53 84.32 0.63 4.80 16 14 Cl 0.04 0.77 27.36 -2.72 -0.07 0.69 16 15 C 0.09 2.01 3.73 86.73 0.32 2.33 16 16 C -0.08 -1.63 2.45 -9.61 -0.02 -1.66 16 17 H 0.10 1.90 8.04 -2.39 -0.02 1.88 16 18 C -0.10 -2.78 4.72 30.59 0.14 -2.64 16 19 C 0.15 5.60 6.11 86.38 0.53 6.13 16 20 N -0.76 -37.55 5.60 -343.45 -1.92 -39.47 16 21 C -0.33 -18.58 9.99 84.04 0.84 -17.74 16 22 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 23 C -0.11 -6.13 5.50 84.86 0.47 -5.66 16 24 N -0.98 -61.10 13.70 21.65 0.30 -60.81 16 25 Si 1.13 51.67 29.92 68.60 2.05 53.72 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 27 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.89 8.08 -2.38 -0.02 0.87 16 32 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 33 H 0.08 1.44 7.99 -2.39 -0.02 1.42 16 34 H 0.22 4.75 4.52 -2.91 -0.01 4.73 16 35 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.11 0.73 7.77 -2.39 -0.02 0.72 16 38 H 0.07 1.67 6.36 -2.39 -0.02 1.66 16 39 H 0.08 1.66 7.09 -2.39 -0.02 1.64 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 41 H 0.06 1.70 8.06 -2.38 -0.02 1.69 16 42 H 0.03 0.90 7.49 -2.39 -0.02 0.88 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.36 18.45 6.50 -92.71 -0.60 17.85 16 45 H 0.24 15.16 6.77 -92.71 -0.63 14.53 16 Total: -1.00 -75.38 379.56 3.00 -72.38 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.55 Total: 25.37 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 7.00 Total: 0.37 kcal Atomic # 7 Polarization: -127.66 SS G_CDS: -6.47 Total: -134.13 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.07 Total: -18.41 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.05 Total: 53.72 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -0.07 Total: 0.69 kcal Total: -75.38 3.00 -72.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104355212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.660 kcal (2) G-P(sol) polarization free energy of solvation -75.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds