Wall clock time and date at job start Sat Apr 11 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.28831 * 2 1 4 4 C 1.54000 * 110.32444 * 237.86507 * 2 1 3 5 5 N 1.47483 * 107.08851 * 242.30892 * 4 2 1 6 6 C 1.34772 * 127.03685 * 154.51359 * 5 4 2 7 7 O 1.21575 * 120.00112 * 180.02562 * 6 5 4 8 8 C 1.47714 * 120.00000 * 0.03586 * 6 5 4 9 9 C 1.41501 * 126.51097 * 179.97438 * 8 6 5 10 10 C 1.35515 * 105.48248 * 179.97438 * 9 8 6 11 11 Cl 1.73599 * 126.40193 * 179.73225 * 10 9 8 12 12 N 1.35069 * 107.19760 * 0.02562 * 10 9 8 13 13 C 1.46504 * 124.88518 * 179.97438 * 12 10 9 14 14 N 1.28463 * 110.23043 * 359.97438 * 12 10 9 15 15 C 1.48115 * 105.92854 * 334.78247 * 5 4 2 16 16 C 1.54598 * 103.42340 * 39.02381 * 15 5 4 17 17 H 1.08997 * 110.73159 * 81.24173 * 16 15 5 18 18 C 1.53002 * 110.82971 * 204.44403 * 16 15 5 19 19 C 1.52995 * 109.47323 * 288.55893 * 18 16 15 20 20 N 1.46504 * 109.47046 * 180.02562 * 19 18 16 21 21 C 1.36937 * 119.99683 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00371 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00028 * 179.97438 * 21 20 19 24 24 N 1.31625 * 119.99628 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00367 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.46793 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47100 * 120.00239 * 25 23 21 28 28 H 1.48505 * 109.47221 * 240.00079 * 25 23 21 29 29 H 1.09005 * 109.47130 * 180.67938 * 1 2 3 30 30 H 1.08996 * 109.47474 * 300.67533 * 1 2 3 31 31 H 1.09002 * 109.47255 * 60.68138 * 1 2 3 32 32 H 1.09002 * 109.91346 * 122.94838 * 4 2 1 33 33 H 1.08999 * 110.07660 * 1.76556 * 4 2 1 34 34 H 1.07995 * 127.26338 * 359.97438 * 9 8 6 35 35 H 1.08992 * 109.47121 * 89.99143 * 13 12 10 36 36 H 1.09001 * 109.46479 * 209.99470 * 13 12 10 37 37 H 1.09007 * 109.46630 * 329.99057 * 13 12 10 38 38 H 1.09006 * 110.66326 * 157.50508 * 15 5 4 39 39 H 1.08994 * 110.66253 * 280.61818 * 15 5 4 40 40 H 1.08998 * 109.47069 * 48.56242 * 18 16 15 41 41 H 1.09006 * 109.46709 * 168.55871 * 18 16 15 42 42 H 1.08998 * 109.47334 * 300.00187 * 19 18 16 43 43 H 1.08998 * 109.47264 * 60.00622 * 19 18 16 44 44 H 0.96995 * 119.99985 * 359.97438 * 20 19 18 45 45 H 0.97003 * 119.99849 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8297 -1.9203 -0.7104 6 6 3.0644 -3.0859 -1.3449 7 8 3.7155 -3.9551 -0.7986 8 6 2.5306 -3.3073 -2.7044 9 6 2.6928 -4.4706 -3.4934 10 6 2.0359 -4.2169 -4.6512 11 17 1.8957 -5.2860 -6.0117 12 7 1.5161 -2.9742 -4.5514 13 6 0.7274 -2.3098 -5.5920 14 7 1.8128 -2.4587 -3.4127 15 6 3.2816 -1.5368 0.6470 16 6 2.0692 -0.7721 1.2262 17 1 1.3198 -1.4670 1.6050 18 6 2.5114 0.1966 2.3249 19 6 2.9217 -0.5951 3.5681 20 7 3.3445 0.3325 4.6203 21 6 3.7589 -0.1505 5.8328 22 1 3.7738 -1.2151 6.0136 23 6 4.1600 0.7284 6.8296 24 7 4.1414 2.0260 6.6094 25 14 4.7247 0.0697 8.4839 26 1 4.6522 -1.4134 8.4770 27 1 6.1252 0.4952 8.7342 28 1 3.8461 0.6038 9.5555 29 1 -0.3634 -1.0276 0.0122 30 1 -0.3634 0.5243 0.8838 31 1 -0.3634 0.5032 -0.8960 32 1 2.7165 -0.1221 -1.8112 33 1 1.2353 -1.1171 -1.8377 34 1 3.2273 -5.3709 -3.2288 35 1 -0.3288 -2.5374 -5.4483 36 1 0.8786 -1.2322 -5.5299 37 1 1.0457 -2.6657 -6.5719 38 1 3.4981 -2.4223 1.2448 39 1 4.1540 -0.8858 0.5924 40 1 3.3590 0.7839 1.9719 41 1 1.6862 0.8635 2.5748 42 1 2.0741 -1.1824 3.9211 43 1 3.7469 -1.2620 3.3182 44 1 3.3315 1.2887 4.4578 45 1 4.4220 2.6401 7.3059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104402740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:35 Heat of formation + Delta-G solvation = 52.913879 kcal Electronic energy + Delta-G solvation = -26819.046503 eV Core-core repulsion = 22899.714489 eV Total energy + Delta-G solvation = -3919.332014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.18453 -40.05750 -38.00417 -37.43606 -35.10562 -34.07729 -33.16846 -32.00797 -31.04486 -30.15794 -28.39168 -26.84789 -26.48649 -24.50484 -23.06252 -22.30290 -21.88448 -20.65269 -19.99018 -19.71806 -17.96035 -17.10147 -17.03745 -16.90399 -15.97673 -15.48838 -14.90841 -14.62592 -14.57176 -14.44892 -14.26702 -13.73046 -13.47457 -13.32720 -13.25427 -13.20473 -13.07960 -12.93332 -12.63940 -12.38777 -12.28888 -12.04585 -11.66469 -11.32617 -11.23974 -11.08460 -10.92659 -10.79872 -10.51612 -10.39400 -10.22040 -10.20496 -9.90169 -9.66581 -9.61963 -9.48125 -8.82111 -8.71851 -6.86270 -5.71823 -2.99903 0.96408 1.08088 1.49953 1.98254 2.85603 3.17242 3.47310 3.53107 3.55465 3.74898 4.25500 4.46045 4.51962 4.57561 4.64388 4.70540 4.75653 4.79385 4.91929 5.13506 5.19997 5.34083 5.43173 5.50324 5.57038 5.60302 5.70030 5.75471 5.81879 5.84185 5.91368 5.94931 6.02628 6.07971 6.15175 6.24699 6.34483 6.42774 6.51910 6.91145 6.94836 7.23657 7.44212 7.76276 8.02474 8.47626 9.58609 10.17360 10.51836 11.51320 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025761 B = 0.001949 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.649411 B =14363.700322 C =15216.045557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.088 0.912 4 C 0.105 3.895 5 N -0.607 5.607 6 C 0.619 3.381 7 O -0.528 6.528 8 C 0.002 3.998 9 C -0.150 4.150 10 C 0.048 3.952 11 Cl 0.003 6.997 12 N -0.276 5.276 13 C 0.080 3.920 14 N -0.236 5.236 15 C 0.110 3.890 16 C -0.091 4.091 17 H 0.084 0.916 18 C -0.114 4.114 19 C 0.151 3.849 20 N -0.734 5.734 21 C -0.236 4.236 22 H 0.071 0.929 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.174 0.826 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 -8.581 -31.700 34.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.106 0.894 4 C -0.018 4.018 5 N -0.340 5.340 6 C 0.405 3.595 7 O -0.403 6.403 8 C -0.157 4.157 9 C -0.179 4.179 10 C -0.102 4.102 11 Cl 0.031 6.969 12 N -0.067 5.067 13 C -0.060 4.060 14 N -0.073 5.073 15 C -0.012 4.012 16 C -0.111 4.111 17 H 0.102 0.898 18 C -0.152 4.152 19 C 0.023 3.977 20 N -0.378 5.378 21 C -0.367 4.367 22 H 0.089 0.911 23 C -0.213 4.213 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.192 0.808 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.216 0.784 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.021 -8.244 -31.518 34.085 hybrid contribution 0.544 -0.760 0.517 1.068 sum -9.477 -9.004 -31.002 33.645 Atomic orbital electron populations 1.21817 0.94188 1.01852 1.01924 1.22186 0.96414 0.99797 0.93929 0.89399 1.22375 0.96123 0.86888 0.96384 1.48580 1.52881 1.14437 1.18069 1.16317 0.79836 0.80949 0.82415 1.90839 1.40455 1.42903 1.66120 1.21784 1.03747 0.93404 0.96814 1.21475 1.04287 1.00978 0.91154 1.21914 1.06434 0.87819 0.94073 1.98410 1.97196 1.60279 1.41003 1.45574 1.38337 1.10117 1.12648 1.22314 0.95629 1.00041 0.88021 1.73808 1.16001 1.24101 0.93350 1.22641 0.97130 1.00112 0.81268 1.22289 0.96925 0.97368 0.94517 0.89784 1.21722 1.01299 0.97626 0.94578 1.20689 0.96446 0.92824 0.87705 1.42377 1.79069 1.05155 1.11231 1.19304 1.35299 0.92189 0.89921 0.91122 1.24747 1.02610 0.95346 0.98556 1.69676 1.54496 1.00685 1.33543 0.86111 0.77995 0.77901 0.84200 1.20532 1.21898 1.21923 0.92737 0.91909 0.92714 0.91672 0.89192 0.80827 0.89042 0.87691 0.88424 0.89231 0.90293 0.91600 0.91378 0.96448 0.96243 0.78351 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.90 37.16 0.33 -0.96 16 2 C -0.10 -1.08 3.17 -89.25 -0.28 -1.36 16 3 H 0.09 0.87 7.85 -51.93 -0.41 0.46 16 4 C 0.11 1.10 5.94 -2.98 -0.02 1.08 16 5 N -0.61 -7.94 3.29 -171.14 -0.56 -8.50 16 6 C 0.62 8.96 7.90 -12.39 -0.10 8.86 16 7 O -0.53 -9.27 17.13 5.30 0.09 -9.18 16 8 C 0.00 0.02 6.99 -82.77 -0.58 -0.55 16 9 C -0.15 -1.57 10.79 -39.31 -0.42 -1.99 16 10 C 0.05 0.40 7.44 -17.10 -0.13 0.27 16 11 Cl 0.00 0.02 28.67 -51.86 -1.49 -1.47 16 12 N -0.28 -2.16 3.70 -64.87 -0.24 -2.40 16 13 C 0.08 0.25 11.14 59.85 0.67 0.92 16 14 N -0.24 -2.39 9.19 33.42 0.31 -2.08 16 15 C 0.11 1.50 5.92 -2.31 -0.01 1.49 16 16 C -0.09 -1.16 2.58 -88.93 -0.23 -1.39 16 17 H 0.08 1.12 7.86 -51.93 -0.41 0.71 16 18 C -0.11 -1.77 4.70 -26.73 -0.13 -1.89 16 19 C 0.15 3.06 6.15 -4.04 -0.02 3.04 16 20 N -0.73 -19.01 5.60 -59.91 -0.34 -19.34 16 21 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 22 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 23 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 24 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 25 Si 0.91 22.92 29.55 -169.99 -5.02 17.89 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.90 5.74 -51.93 -0.30 0.60 16 34 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.10 0.15 7.71 -51.93 -0.40 -0.25 16 38 H 0.09 1.36 7.83 -51.93 -0.41 0.95 16 39 H 0.08 1.07 7.93 -51.93 -0.41 0.65 16 40 H 0.07 1.02 7.99 -51.93 -0.41 0.61 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.40 7.67 -51.93 -0.40 0.01 16 44 H 0.38 10.31 7.67 -40.82 -0.31 10.00 16 45 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -34.71 386.22 -8.69 -43.40 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.81 Total: 3.90 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.17 Total: -0.02 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.11 Total: -60.34 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -1.49 Total: -1.47 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.71 -8.69 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104402740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.312 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds