Wall clock time and date at job start Sat Apr 11 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.28831 * 2 1 4 4 C 1.54000 * 110.32444 * 237.86507 * 2 1 3 5 5 N 1.47483 * 107.08851 * 242.30892 * 4 2 1 6 6 C 1.34772 * 127.03685 * 154.51359 * 5 4 2 7 7 O 1.21575 * 120.00112 * 180.02562 * 6 5 4 8 8 C 1.47714 * 120.00000 * 0.03586 * 6 5 4 9 9 C 1.41501 * 126.51097 * 179.97438 * 8 6 5 10 10 C 1.35515 * 105.48248 * 179.97438 * 9 8 6 11 11 Cl 1.73599 * 126.40193 * 179.73225 * 10 9 8 12 12 N 1.35069 * 107.19760 * 0.02562 * 10 9 8 13 13 C 1.46504 * 124.88518 * 179.97438 * 12 10 9 14 14 N 1.28463 * 110.23043 * 359.97438 * 12 10 9 15 15 C 1.48115 * 105.92854 * 334.78247 * 5 4 2 16 16 C 1.54598 * 103.42340 * 39.02381 * 15 5 4 17 17 H 1.08997 * 110.73159 * 81.24173 * 16 15 5 18 18 C 1.53002 * 110.82971 * 204.44403 * 16 15 5 19 19 C 1.52995 * 109.47323 * 288.55893 * 18 16 15 20 20 N 1.46504 * 109.47046 * 180.02562 * 19 18 16 21 21 C 1.36937 * 119.99683 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00371 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00028 * 179.97438 * 21 20 19 24 24 N 1.31625 * 119.99628 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00367 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.46793 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47100 * 120.00239 * 25 23 21 28 28 H 1.48505 * 109.47221 * 240.00079 * 25 23 21 29 29 H 1.09005 * 109.47130 * 180.67938 * 1 2 3 30 30 H 1.08996 * 109.47474 * 300.67533 * 1 2 3 31 31 H 1.09002 * 109.47255 * 60.68138 * 1 2 3 32 32 H 1.09002 * 109.91346 * 122.94838 * 4 2 1 33 33 H 1.08999 * 110.07660 * 1.76556 * 4 2 1 34 34 H 1.07995 * 127.26338 * 359.97438 * 9 8 6 35 35 H 1.08992 * 109.47121 * 89.99143 * 13 12 10 36 36 H 1.09001 * 109.46479 * 209.99470 * 13 12 10 37 37 H 1.09007 * 109.46630 * 329.99057 * 13 12 10 38 38 H 1.09006 * 110.66326 * 157.50508 * 15 5 4 39 39 H 1.08994 * 110.66253 * 280.61818 * 15 5 4 40 40 H 1.08998 * 109.47069 * 48.56242 * 18 16 15 41 41 H 1.09006 * 109.46709 * 168.55871 * 18 16 15 42 42 H 1.08998 * 109.47334 * 300.00187 * 19 18 16 43 43 H 1.08998 * 109.47264 * 60.00622 * 19 18 16 44 44 H 0.96995 * 119.99985 * 359.97438 * 20 19 18 45 45 H 0.97003 * 119.99849 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8297 -1.9203 -0.7104 6 6 3.0644 -3.0859 -1.3449 7 8 3.7155 -3.9551 -0.7986 8 6 2.5306 -3.3073 -2.7044 9 6 2.6928 -4.4706 -3.4934 10 6 2.0359 -4.2169 -4.6512 11 17 1.8957 -5.2860 -6.0117 12 7 1.5161 -2.9742 -4.5514 13 6 0.7274 -2.3098 -5.5920 14 7 1.8128 -2.4587 -3.4127 15 6 3.2816 -1.5368 0.6470 16 6 2.0692 -0.7721 1.2262 17 1 1.3198 -1.4670 1.6050 18 6 2.5114 0.1966 2.3249 19 6 2.9217 -0.5951 3.5681 20 7 3.3445 0.3325 4.6203 21 6 3.7589 -0.1505 5.8328 22 1 3.7738 -1.2151 6.0136 23 6 4.1600 0.7284 6.8296 24 7 4.1414 2.0260 6.6094 25 14 4.7247 0.0697 8.4839 26 1 4.6522 -1.4134 8.4770 27 1 6.1252 0.4952 8.7342 28 1 3.8461 0.6038 9.5555 29 1 -0.3634 -1.0276 0.0122 30 1 -0.3634 0.5243 0.8838 31 1 -0.3634 0.5032 -0.8960 32 1 2.7165 -0.1221 -1.8112 33 1 1.2353 -1.1171 -1.8377 34 1 3.2273 -5.3709 -3.2288 35 1 -0.3288 -2.5374 -5.4483 36 1 0.8786 -1.2322 -5.5299 37 1 1.0457 -2.6657 -6.5719 38 1 3.4981 -2.4223 1.2448 39 1 4.1540 -0.8858 0.5924 40 1 3.3590 0.7839 1.9719 41 1 1.6862 0.8635 2.5748 42 1 2.0741 -1.1824 3.9211 43 1 3.7469 -1.2620 3.3182 44 1 3.3315 1.2887 4.4578 45 1 4.4220 2.6401 7.3059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104402740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:35 Heat of formation + Delta-G solvation = 30.639437 kcal Electronic energy + Delta-G solvation = -26820.012395 eV Core-core repulsion = 22899.714489 eV Total energy + Delta-G solvation = -3920.297906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.89180 -41.10412 -39.12384 -38.01241 -36.86749 -34.86889 -34.40616 -33.43008 -31.95831 -31.58168 -29.32817 -27.99576 -27.32459 -26.01630 -24.44660 -23.45009 -22.68013 -21.94137 -21.00793 -20.60416 -19.16649 -18.74559 -17.81015 -17.68261 -17.04951 -16.65321 -16.49444 -15.94923 -15.42120 -15.37065 -15.22572 -15.16958 -15.02581 -14.51020 -14.33426 -14.02397 -13.84770 -13.56150 -13.54649 -13.27348 -13.17936 -13.09085 -12.89308 -12.72977 -12.67052 -12.42094 -12.27309 -12.08976 -11.98074 -11.85517 -11.56928 -11.54229 -11.28465 -11.23517 -10.92812 -10.38332 -10.16677 -9.75489 -8.99520 -7.95785 -5.24301 0.28371 0.34442 0.71079 1.39508 1.46993 1.47839 1.58273 1.93648 2.16500 2.55806 3.01420 3.37655 3.44467 3.57171 3.74213 3.80021 4.07874 4.12093 4.25538 4.27179 4.30760 4.31673 4.39653 4.49278 4.51727 4.61456 4.61941 4.69344 4.73630 4.81686 4.91090 4.93267 4.93939 5.07381 5.13994 5.19206 5.29139 5.36115 5.40381 5.43470 5.50104 5.56928 6.27649 6.36919 6.53686 6.96642 7.33566 8.09900 8.33811 9.27880 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025761 B = 0.001949 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.649411 B =14363.700322 C =15216.045557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 H 0.100 0.900 4 C 0.109 3.891 5 N -0.607 5.607 6 C 0.613 3.387 7 O -0.573 6.573 8 C -0.026 4.026 9 C -0.168 4.168 10 C 0.054 3.946 11 Cl 0.027 6.973 12 N -0.264 5.264 13 C 0.066 3.934 14 N -0.232 5.232 15 C 0.108 3.892 16 C -0.081 4.081 17 H 0.079 0.921 18 C -0.097 4.097 19 C 0.148 3.852 20 N -0.747 5.747 21 C -0.247 4.247 22 H 0.072 0.928 23 C -0.077 4.077 24 N -0.968 5.968 25 Si 0.974 3.026 26 H -0.269 1.269 27 H -0.292 1.292 28 H -0.290 1.290 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.172 0.828 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.375 0.625 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.270 -8.363 -33.900 36.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.118 0.882 4 C -0.013 4.013 5 N -0.339 5.339 6 C 0.401 3.599 7 O -0.452 6.452 8 C -0.183 4.183 9 C -0.198 4.198 10 C -0.097 4.097 11 Cl 0.055 6.945 12 N -0.055 5.055 13 C -0.072 4.072 14 N -0.071 5.071 15 C -0.014 4.014 16 C -0.101 4.101 17 H 0.098 0.902 18 C -0.136 4.136 19 C 0.022 3.978 20 N -0.389 5.389 21 C -0.378 4.378 22 H 0.090 0.910 23 C -0.269 4.269 24 N -0.619 5.619 25 Si 0.802 3.198 26 H -0.193 1.193 27 H -0.219 1.219 28 H -0.217 1.217 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.190 0.810 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.207 0.793 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.438 -8.028 -33.758 36.536 hybrid contribution 0.917 -0.867 1.044 1.637 sum -10.521 -8.895 -32.714 35.497 Atomic orbital electron populations 1.21798 0.92935 1.01812 1.02894 1.22169 0.97370 0.99828 0.92099 0.88217 1.22507 0.96325 0.85994 0.96501 1.48654 1.52702 1.14842 1.17668 1.16703 0.79298 0.80636 0.83268 1.90795 1.42574 1.44341 1.67463 1.21447 1.05813 0.94795 0.96286 1.21568 1.05287 1.00854 0.92041 1.21898 1.05427 0.88248 0.94123 1.98422 1.97042 1.59560 1.39496 1.46029 1.37183 1.09879 1.12435 1.22807 0.96122 1.00803 0.87463 1.73720 1.15570 1.23761 0.94029 1.22567 0.97727 0.99286 0.81829 1.22135 0.96376 0.96872 0.94731 0.90238 1.21545 1.01431 0.97494 0.93097 1.20857 0.95948 0.92603 0.88380 1.42587 1.79109 1.05516 1.11725 1.19669 1.34655 0.92363 0.91155 0.91035 1.25578 1.03421 0.95687 1.02191 1.69817 1.55757 1.01757 1.34542 0.85070 0.77158 0.77824 0.79701 1.19337 1.21863 1.21732 0.93259 0.92216 0.90522 0.90483 0.88264 0.81005 0.87132 0.86206 0.86518 0.91513 0.90187 0.91396 0.90944 0.96671 0.96633 0.79263 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.90 71.98 0.64 -1.55 16 2 C -0.10 -1.79 3.17 -9.91 -0.03 -1.82 16 3 H 0.10 1.70 7.85 -2.39 -0.02 1.68 16 4 C 0.11 2.09 5.94 86.53 0.51 2.60 16 5 N -0.61 -15.91 3.29 -813.64 -2.68 -18.59 16 6 C 0.61 18.31 7.90 86.75 0.69 19.00 16 7 O -0.57 -21.32 17.13 -3.95 -0.07 -21.38 16 8 C -0.03 -0.62 6.99 42.46 0.30 -0.33 16 9 C -0.17 -3.51 10.79 22.44 0.24 -3.26 16 10 C 0.05 0.82 7.44 83.56 0.62 1.44 16 11 Cl 0.03 0.28 28.67 -2.72 -0.08 0.20 16 12 N -0.26 -3.51 3.70 -359.15 -1.33 -4.84 16 13 C 0.07 0.19 11.14 127.77 1.42 1.62 16 14 N -0.23 -4.33 9.19 -48.18 -0.44 -4.78 16 15 C 0.11 3.01 5.92 86.61 0.51 3.53 16 16 C -0.08 -2.03 2.58 -9.70 -0.03 -2.06 16 17 H 0.08 2.09 7.86 -2.39 -0.02 2.07 16 18 C -0.10 -2.98 4.70 30.59 0.14 -2.83 16 19 C 0.15 6.09 6.15 86.38 0.53 6.63 16 20 N -0.75 -39.15 5.60 -343.45 -1.92 -41.07 16 21 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 22 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 23 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 24 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 25 Si 0.97 47.38 29.55 68.60 2.03 49.40 16 26 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 27 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 29 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.10 1.76 5.74 -2.39 -0.01 1.75 16 34 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.12 -0.06 7.71 -2.38 -0.02 -0.08 16 38 H 0.07 2.15 7.83 -2.38 -0.02 2.14 16 39 H 0.08 2.20 7.93 -2.39 -0.02 2.18 16 40 H 0.07 2.06 7.99 -2.39 -0.02 2.04 16 41 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.02 0.66 7.67 -2.39 -0.02 0.64 16 44 H 0.38 20.53 7.67 -92.71 -0.71 19.81 16 45 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -76.00 386.22 2.94 -73.05 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.29 Total: 22.40 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 6.86 Total: 5.45 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -6.09 Total: -129.12 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.07 Total: -21.38 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.40 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -0.08 Total: 0.20 kcal Total: -76.00 2.94 -73.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104402740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.691 kcal (2) G-P(sol) polarization free energy of solvation -75.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds