Wall clock time and date at job start Sat Apr 11 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.45710 * 2 1 4 4 C 1.53038 * 109.44913 * 240.02912 * 2 1 3 5 5 C 1.53194 * 109.31288 * 178.61683 * 4 2 1 6 6 N 1.46932 * 108.77379 * 54.63347 * 5 4 2 7 7 C 1.34779 * 120.62528 * 126.66349 * 6 5 4 8 8 O 1.21640 * 119.99468 * 174.44217 * 7 6 5 9 9 C 1.47033 * 120.00293 * 354.44399 * 7 6 5 10 10 C 1.38544 * 126.90030 * 268.95960 * 9 7 6 11 11 Cl 1.73594 * 127.34116 * 0.02562 * 10 9 7 12 12 C 1.39813 * 105.32113 * 179.91631 * 10 9 7 13 13 N 1.30830 * 107.87493 * 0.34967 * 12 10 9 14 14 N 1.28430 * 110.98491 * 359.77731 * 13 12 10 15 15 C 1.46506 * 125.18890 * 179.97438 * 14 13 12 16 16 C 1.46924 * 118.73954 * 306.39344 * 6 5 4 17 17 C 1.53042 * 109.46064 * 119.96524 * 2 1 3 18 18 H 1.08998 * 109.49424 * 61.42527 * 17 2 1 19 19 C 1.53001 * 109.52449 * 301.34247 * 17 2 1 20 20 N 1.46508 * 109.46848 * 175.14927 * 19 17 2 21 21 C 1.36929 * 120.00014 * 180.02562 * 20 19 17 22 22 H 1.08003 * 119.99975 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00411 * 179.97438 * 21 20 19 24 24 N 1.31625 * 119.99458 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00476 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47197 * 59.99803 * 25 23 21 27 27 H 1.48496 * 109.47338 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47007 * 300.00257 * 25 23 21 29 29 H 1.09007 * 109.47006 * 300.02929 * 1 2 3 30 30 H 1.08993 * 109.47116 * 60.03422 * 1 2 3 31 31 H 1.09002 * 109.46924 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.49782 * 298.57083 * 4 2 1 33 33 H 1.09006 * 109.49360 * 58.63890 * 4 2 1 34 34 H 1.09003 * 109.58637 * 294.85195 * 5 4 2 35 35 H 1.08999 * 109.58954 * 174.42405 * 5 4 2 36 36 H 1.07994 * 126.05946 * 180.10707 * 12 10 9 37 37 H 1.08997 * 109.47442 * 274.98106 * 15 14 13 38 38 H 1.08999 * 109.47246 * 34.98065 * 15 14 13 39 39 H 1.09001 * 109.47224 * 154.98135 * 15 14 13 40 40 H 1.09003 * 109.58518 * 173.39278 * 16 6 5 41 41 H 1.09003 * 109.58734 * 293.81921 * 16 6 5 42 42 H 1.09005 * 109.47030 * 295.14017 * 19 17 2 43 43 H 1.08998 * 109.46926 * 55.14693 * 19 17 2 44 44 H 0.97002 * 119.99607 * 359.97438 * 20 19 17 45 45 H 0.96999 * 119.99466 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7209 -1.2501 5 6 3.5711 -0.6889 -1.2645 6 7 4.0677 -1.2491 -0.0002 7 6 4.9656 -2.2543 -0.0003 8 8 5.4451 -2.6415 1.0484 9 6 5.3655 -2.8827 -1.2680 10 6 4.7816 -3.9853 -1.8704 11 17 3.4314 -4.9099 -1.2912 12 6 5.5100 -4.1931 -3.0456 13 7 6.4458 -3.2807 -3.1047 14 7 6.3920 -2.5001 -2.0863 15 6 7.2935 -1.3720 -1.8386 16 6 3.5714 -0.6887 1.2641 17 6 2.0399 -0.7207 1.2501 18 1 1.6977 -1.7555 1.2384 19 6 1.5030 -0.0194 2.4994 20 7 1.8954 -0.7763 3.6909 21 6 1.5247 -0.3371 4.9338 22 1 0.9434 0.5674 5.0358 23 6 1.8960 -1.0544 6.0627 24 7 2.6040 -2.1571 5.9384 25 14 1.3909 -0.4550 7.7583 26 1 -0.0906 -0.3965 7.8416 27 1 1.9086 -1.3907 8.7886 28 1 1.9537 0.8991 7.9925 29 1 -0.3633 0.5143 0.8898 30 1 -0.3633 0.5133 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 1.6974 -1.7556 -1.2382 33 1 1.6564 -0.2211 -2.1398 34 1 3.9142 0.3406 -1.3676 35 1 3.9413 -1.2849 -2.0987 36 1 5.3341 -4.9715 -3.7733 37 1 8.1965 -1.7302 -1.3444 38 1 7.5593 -0.9045 -2.7867 39 1 6.7953 -0.6421 -1.2006 40 1 3.9418 -1.2847 2.0982 41 1 3.9145 0.3408 1.3671 42 1 1.9161 0.9878 2.5565 43 1 0.4158 0.0362 2.4459 44 1 2.4172 -1.5888 3.5992 45 1 2.8637 -2.6581 6.7272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132824193.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:00 Heat of formation + Delta-G solvation = 50.902573 kcal Electronic energy + Delta-G solvation = -28355.626427 eV Core-core repulsion = 24436.207197 eV Total energy + Delta-G solvation = -3919.419231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.89779 -40.12378 -37.98938 -36.70747 -35.05177 -33.79354 -33.64018 -31.97911 -31.11746 -29.81011 -28.24030 -27.46782 -25.78340 -24.08947 -23.24428 -22.37129 -21.88088 -21.25338 -19.98400 -19.30084 -17.99690 -17.03403 -16.91478 -16.16652 -15.91344 -15.48655 -14.86889 -14.72120 -14.51592 -14.41530 -13.91255 -13.81617 -13.58798 -13.44879 -13.19870 -13.11580 -13.05899 -12.72595 -12.53709 -12.05095 -11.93205 -11.82221 -11.76258 -11.56951 -11.00706 -10.90189 -10.82125 -10.70509 -10.64791 -10.35870 -10.23000 -10.14871 -9.90313 -9.60103 -9.51203 -8.95483 -8.84632 -8.66338 -6.87338 -5.70207 -3.00102 1.23482 1.56969 2.16866 2.21940 2.56499 2.93403 3.47040 3.51153 3.52917 4.05858 4.18662 4.58017 4.65663 4.68376 4.71322 4.78597 4.84558 4.98891 5.02588 5.07346 5.11020 5.20163 5.30961 5.56182 5.61008 5.65360 5.67581 5.76719 5.86864 5.89460 5.92232 6.00170 6.11697 6.20028 6.25995 6.31033 6.42065 6.49133 6.53274 6.79334 6.87443 7.23659 7.60477 7.73355 7.95451 8.47389 9.58334 10.16041 10.50072 11.51942 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.003298 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.532390 B = 8486.997614 C = 9056.883290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.127 4.127 5 C 0.107 3.893 6 N -0.594 5.594 7 C 0.584 3.416 8 O -0.502 6.502 9 C 0.001 3.999 10 C -0.119 4.119 11 Cl -0.015 7.015 12 C 0.024 3.976 13 N -0.274 5.274 14 N -0.268 5.268 15 C 0.087 3.913 16 C 0.121 3.879 17 C -0.102 4.102 18 H 0.076 0.924 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.243 4.243 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.195 0.805 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.018 0.982 43 H 0.028 0.972 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.560 2.294 -23.792 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.016 4.016 6 N -0.327 5.327 7 C 0.367 3.633 8 O -0.374 6.374 9 C -0.129 4.129 10 C -0.157 4.157 11 Cl 0.014 6.986 12 C -0.154 4.154 13 N -0.105 5.105 14 N -0.057 5.057 15 C -0.053 4.053 16 C 0.000 4.000 17 C -0.122 4.122 18 H 0.095 0.905 19 C 0.031 3.969 20 N -0.378 5.378 21 C -0.374 4.374 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.212 0.788 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.089 0.911 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.656 2.614 -23.630 24.437 hybrid contribution -0.876 -0.419 1.402 1.705 sum 4.780 2.196 -22.228 22.842 Atomic orbital electron populations 1.21875 0.94795 1.02075 1.01735 1.21093 0.96153 0.99266 0.93768 0.91033 1.21967 0.93978 1.02039 0.98582 1.21762 0.95504 0.98822 0.85483 1.48137 1.42062 1.34002 1.08534 1.16942 0.80307 0.79802 0.86276 1.90947 1.53801 1.61277 1.31406 1.21311 0.95326 1.00144 0.96125 1.21265 0.98186 0.98180 0.98102 1.98380 1.41012 1.71088 1.88118 1.23507 0.93698 1.00309 0.97905 1.73221 1.23074 1.04695 1.09486 1.45495 1.22781 1.23514 1.13878 1.22278 0.93287 0.85227 1.04482 1.21865 0.94078 0.99276 0.84811 1.21732 0.94051 1.01061 0.95320 0.90528 1.20717 0.96907 0.93998 0.85243 1.42408 1.65307 1.29268 1.00783 1.19140 1.28069 1.06454 0.83776 0.91312 1.24748 1.00778 0.97482 0.97779 1.69665 1.42156 1.17239 1.28659 0.86296 0.77982 0.77636 0.84402 1.21330 1.21711 1.21323 0.91569 0.93200 0.92687 0.91084 0.90746 0.91034 0.90574 0.78823 0.88995 0.87884 0.88646 0.87545 0.91062 0.96378 0.95421 0.78137 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.81 37.16 0.33 -1.34 16 2 C -0.08 -0.98 2.23 -90.58 -0.20 -1.18 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.13 -1.26 5.36 -26.61 -0.14 -1.41 16 5 C 0.11 1.07 6.35 -3.71 -0.02 1.05 16 6 N -0.59 -8.06 2.97 -174.17 -0.52 -8.58 16 7 C 0.58 9.10 6.79 -12.69 -0.09 9.01 16 8 O -0.50 -10.13 16.54 5.24 0.09 -10.04 16 9 C 0.00 0.02 4.65 -82.00 -0.38 -0.36 16 10 C -0.12 -1.50 6.89 -38.88 -0.27 -1.77 16 11 Cl -0.01 -0.19 29.24 -51.86 -1.52 -1.70 16 12 C 0.02 0.25 12.04 -17.39 -0.21 0.04 16 13 N -0.27 -3.05 11.89 30.61 0.36 -2.69 16 14 N -0.27 -2.94 3.75 -63.85 -0.24 -3.18 16 15 C 0.09 0.63 11.22 59.85 0.67 1.30 16 16 C 0.12 1.93 5.50 -3.71 -0.02 1.91 16 17 C -0.10 -1.60 1.92 -90.50 -0.17 -1.77 16 18 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 19 C 0.16 3.09 5.41 -4.04 -0.02 3.06 16 20 N -0.73 -18.56 5.38 -59.90 -0.32 -18.88 16 21 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 22 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 25 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H 0.07 0.82 6.30 -51.92 -0.33 0.50 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.74 6.33 -51.93 -0.33 0.41 16 36 H 0.19 1.40 8.06 -52.49 -0.42 0.97 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.65 7.66 -51.93 -0.40 0.25 16 40 H 0.11 2.16 6.24 -51.93 -0.32 1.83 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.03 0.54 6.15 -51.93 -0.32 0.22 16 44 H 0.38 10.47 6.89 -40.82 -0.28 10.19 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -34.53 379.68 -8.09 -42.62 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.60 Total: 6.02 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -0.78 Total: 1.11 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.01 Total: -61.39 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.52 Total: -1.70 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.53 -8.09 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132824193.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.523 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds