Wall clock time and date at job start Sat Apr 11 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.44940 * 2 1 4 4 C 1.53043 * 109.45865 * 240.03752 * 2 1 3 5 5 C 1.53189 * 109.31225 * 178.61467 * 4 2 1 6 6 N 1.46929 * 108.77527 * 54.63580 * 5 4 2 7 7 C 1.34781 * 120.63062 * 126.37076 * 6 5 4 8 8 O 1.21572 * 119.99673 * 174.29708 * 7 6 5 9 9 C 1.47666 * 119.99959 * 354.29484 * 7 6 5 10 10 N 1.31827 * 126.46168 * 354.37485 * 9 7 6 11 11 N 1.28468 * 110.13489 * 179.97438 * 10 9 7 12 12 C 1.46503 * 124.93595 * 179.97438 * 11 10 9 13 13 C 1.35639 * 110.13140 * 0.02562 * 11 10 9 14 14 C 1.35460 * 107.13201 * 359.72077 * 13 11 10 15 15 Cl 1.73606 * 127.24178 * 180.25802 * 14 13 11 16 16 C 1.46925 * 118.73491 * 306.38735 * 6 5 4 17 17 C 1.53037 * 109.45987 * 119.96818 * 2 1 3 18 18 H 1.08999 * 109.52646 * 61.41934 * 17 2 1 19 19 C 1.52991 * 109.49913 * 301.33604 * 17 2 1 20 20 N 1.46504 * 109.47218 * 175.16224 * 19 17 2 21 21 C 1.36937 * 119.99893 * 179.97438 * 20 19 17 22 22 H 1.08007 * 120.00072 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00213 * 179.97438 * 21 20 19 24 24 N 1.31623 * 119.99719 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 120.00248 * 179.72696 * 23 21 20 26 26 H 1.48509 * 109.47307 * 60.00425 * 25 23 21 27 27 H 1.48502 * 109.47048 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47491 * 300.00486 * 25 23 21 29 29 H 1.08997 * 109.47149 * 300.03619 * 1 2 3 30 30 H 1.08999 * 109.47450 * 60.03145 * 1 2 3 31 31 H 1.09002 * 109.47301 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.49758 * 58.66329 * 4 2 1 33 33 H 1.09005 * 109.52400 * 298.58275 * 4 2 1 34 34 H 1.08994 * 109.58762 * 294.84610 * 5 4 2 35 35 H 1.09000 * 109.70457 * 174.48996 * 5 4 2 36 36 H 1.09001 * 109.46655 * 90.03122 * 12 11 10 37 37 H 1.08996 * 109.47204 * 210.03035 * 12 11 10 38 38 H 1.08998 * 109.46967 * 330.03297 * 12 11 10 39 39 H 1.08003 * 126.43807 * 179.97438 * 13 11 10 40 40 H 1.08994 * 109.58963 * 293.82337 * 16 6 5 41 41 H 1.09008 * 109.58338 * 173.39628 * 16 6 5 42 42 H 1.08998 * 109.47436 * 55.16010 * 19 17 2 43 43 H 1.09001 * 109.47249 * 295.16051 * 19 17 2 44 44 H 0.96989 * 119.99803 * 0.02562 * 20 19 17 45 45 H 0.96996 * 119.99827 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2502 5 6 3.5713 -0.6885 -1.2643 6 7 4.0678 -1.2489 -0.0001 7 6 4.9614 -2.2579 -0.0002 8 8 5.4428 -2.6435 1.0474 9 6 5.3555 -2.8950 -1.2727 10 7 4.8421 -2.6522 -2.4624 11 7 5.4176 -3.3816 -3.3496 12 6 5.0976 -3.3727 -4.7793 13 6 6.3639 -4.1618 -2.7704 14 6 6.3599 -3.8771 -1.4460 15 17 7.3713 -4.5733 -0.2187 16 6 3.5713 -0.6886 1.2641 17 6 2.0398 -0.7208 1.2500 18 1 1.6978 -1.7557 1.2388 19 6 1.5028 -0.0190 2.4989 20 7 1.8950 -0.7752 3.6908 21 6 1.5250 -0.3349 4.9335 22 1 0.9436 0.5696 5.0350 23 6 1.8962 -1.0517 6.0628 24 7 2.6042 -2.1543 5.9392 25 14 1.3979 -0.4470 7.7585 26 1 -0.0832 -0.3823 7.8455 27 1 1.9143 -1.3830 8.7893 28 1 1.9668 0.9052 7.9888 29 1 -0.3633 0.5144 0.8896 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3634 -1.0277 0.0005 32 1 1.6572 -0.2206 -2.1398 33 1 1.6977 -1.7556 -1.2390 34 1 3.9142 0.3409 -1.3674 35 1 3.9437 -1.2829 -2.0987 36 1 5.7184 -2.6337 -5.2859 37 1 5.2901 -4.3593 -5.2008 38 1 4.0464 -3.1185 -4.9147 39 1 7.0036 -4.8732 -3.2715 40 1 3.9143 0.3408 1.3673 41 1 3.9417 -1.2847 2.0983 42 1 0.4155 0.0365 2.4454 43 1 1.9156 0.9882 2.5556 44 1 2.4174 -1.5873 3.5997 45 1 2.8633 -2.6554 6.7282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132851574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:09 Heat of formation + Delta-G solvation = 65.066109 kcal Electronic energy + Delta-G solvation = -27967.707104 eV Core-core repulsion = 24048.902050 eV Total energy + Delta-G solvation = -3918.805054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.01460 -39.85634 -37.75677 -36.55476 -34.90244 -33.82417 -33.44967 -31.78025 -31.00765 -29.68756 -28.52326 -27.50630 -25.47434 -23.87288 -23.10595 -22.20752 -21.79304 -21.09109 -19.99419 -19.15041 -17.61631 -17.04412 -16.76810 -16.61842 -15.67500 -14.96277 -14.87629 -14.75029 -14.37674 -14.15427 -13.86917 -13.66208 -13.59361 -13.47748 -13.25986 -13.05791 -12.91315 -12.59622 -12.35963 -12.01857 -11.97723 -11.70323 -11.49298 -11.13486 -10.89181 -10.82839 -10.69723 -10.63826 -10.39195 -10.11960 -10.03237 -9.90306 -9.65728 -9.55787 -9.43069 -9.01675 -8.75420 -8.31944 -6.78825 -5.62679 -2.92152 1.27691 1.65184 1.69090 2.43388 3.17327 3.43060 3.52253 3.56032 3.57875 4.02721 4.31369 4.48186 4.55502 4.68303 4.83303 4.87424 4.94314 5.03070 5.03776 5.12555 5.32175 5.44803 5.50207 5.69313 5.76477 5.78065 5.80353 5.92083 5.98589 6.06599 6.09070 6.14780 6.28675 6.34083 6.40839 6.43201 6.56592 6.67948 6.83554 6.92604 7.00642 7.43330 7.67094 7.80238 8.38068 8.55112 9.65781 10.24727 10.59015 11.59574 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.003242 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.718887 B = 8635.075945 C =10575.503859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.122 4.122 5 C 0.075 3.925 6 N -0.596 5.596 7 C 0.591 3.409 8 O -0.506 6.506 9 C 0.014 3.986 10 N -0.249 5.249 11 N -0.287 5.287 12 C 0.087 3.913 13 C -0.001 4.001 14 C -0.103 4.103 15 Cl -0.005 7.005 16 C 0.122 3.878 17 C -0.101 4.101 18 H 0.073 0.927 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.068 0.932 23 C -0.013 4.013 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.131 0.869 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.191 0.809 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.027 0.973 43 H 0.018 0.982 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.758 -2.031 -28.888 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.160 4.160 5 C -0.049 4.049 6 N -0.329 5.329 7 C 0.375 3.625 8 O -0.378 6.378 9 C -0.147 4.147 10 N -0.084 5.084 11 N -0.074 5.074 12 C -0.053 4.053 13 C -0.145 4.145 14 C -0.141 4.141 15 Cl 0.024 6.976 16 C 0.000 4.000 17 C -0.120 4.120 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.377 5.377 21 C -0.372 4.372 22 H 0.086 0.914 23 C -0.209 4.209 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.148 0.852 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.208 0.792 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.044 0.956 43 H 0.036 0.964 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.235 -1.580 -28.749 29.264 hybrid contribution 0.497 -0.472 1.266 1.440 sum 5.732 -2.052 -27.483 28.149 Atomic orbital electron populations 1.21877 0.95133 1.01854 1.01558 1.21116 0.95800 0.99354 0.94216 0.91202 1.21902 0.95015 1.01183 0.97911 1.22629 0.94670 0.99825 0.87778 1.47954 1.42363 1.34348 1.08275 1.16918 0.79827 0.79807 0.85942 1.90906 1.53364 1.62765 1.30788 1.22082 0.98996 1.01009 0.92578 1.73297 1.21064 1.16527 0.97549 1.45598 1.25584 1.27599 1.08590 1.22252 1.04481 1.04842 0.73691 1.22615 0.98075 1.01385 0.92427 1.20857 1.00251 1.02166 0.90786 1.98386 1.65247 1.82280 1.51679 1.21769 0.93625 0.99196 0.85366 1.21707 0.94457 1.00731 0.95143 0.90827 1.20719 0.96759 0.94041 0.85369 1.42414 1.65249 1.29310 1.00771 1.19150 1.27907 1.06347 0.83832 0.91354 1.24749 1.00899 0.97547 0.97734 1.69668 1.42216 1.17287 1.28563 0.86295 0.77884 0.77650 0.84486 1.21398 1.21746 1.21349 0.91707 0.93346 0.92858 0.91281 0.91770 0.92252 0.85198 0.89359 0.88360 0.88150 0.79177 0.91543 0.87756 0.95569 0.96422 0.78097 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.81 37.16 0.33 -1.52 16 2 C -0.09 -1.15 2.23 -90.58 -0.20 -1.35 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.12 -1.41 5.36 -26.61 -0.14 -1.56 16 5 C 0.07 0.93 6.33 -3.71 -0.02 0.90 16 6 N -0.60 -9.62 2.97 -173.95 -0.52 -10.13 16 7 C 0.59 10.49 7.69 -12.41 -0.10 10.40 16 8 O -0.51 -10.88 15.33 5.30 0.08 -10.80 16 9 C 0.01 0.21 6.88 -82.76 -0.57 -0.36 16 10 N -0.25 -2.82 8.35 33.42 0.28 -2.54 16 11 N -0.29 -2.27 3.72 -67.94 -0.25 -2.52 16 12 C 0.09 0.22 11.32 59.85 0.68 0.89 16 13 C 0.00 -0.01 11.49 -16.86 -0.19 -0.20 16 14 C -0.10 -1.32 6.80 -39.31 -0.27 -1.59 16 15 Cl 0.00 -0.06 28.20 -51.86 -1.46 -1.53 16 16 C 0.12 2.22 5.50 -3.71 -0.02 2.20 16 17 C -0.10 -1.75 1.92 -90.51 -0.17 -1.92 16 18 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 19 C 0.16 3.31 5.41 -4.04 -0.02 3.29 16 20 N -0.73 -19.45 5.38 -59.91 -0.32 -19.77 16 21 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -29.56 13.06 55.49 0.72 -28.84 16 25 Si 0.91 23.29 29.55 -169.99 -5.02 18.27 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H 0.06 0.88 6.30 -51.93 -0.33 0.55 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.13 1.51 3.73 -112.87 -0.42 1.09 16 36 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 37 H 0.10 0.00 8.13 -51.93 -0.42 -0.42 16 38 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.19 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.10 2.32 6.24 -51.92 -0.32 1.99 16 42 H 0.03 0.55 6.15 -51.93 -0.32 0.23 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 10.96 6.89 -40.82 -0.28 10.67 16 45 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -36.63 374.30 -8.52 -45.14 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.71 Total: 5.57 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.95 Total: 1.52 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -0.09 Total: -63.81 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.27 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.46 Total: -1.53 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.63 -8.52 -45.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132851574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.211 kcal (2) G-P(sol) polarization free energy of solvation -36.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds