Wall clock time and date at job start Sat Apr 11 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.44940 * 2 1 4 4 C 1.53043 * 109.45865 * 240.03752 * 2 1 3 5 5 C 1.53189 * 109.31225 * 178.61467 * 4 2 1 6 6 N 1.46929 * 108.77527 * 54.63580 * 5 4 2 7 7 C 1.34781 * 120.63062 * 126.37076 * 6 5 4 8 8 O 1.21572 * 119.99673 * 174.29708 * 7 6 5 9 9 C 1.47666 * 119.99959 * 354.29484 * 7 6 5 10 10 N 1.31827 * 126.46168 * 354.37485 * 9 7 6 11 11 N 1.28468 * 110.13489 * 179.97438 * 10 9 7 12 12 C 1.46503 * 124.93595 * 179.97438 * 11 10 9 13 13 C 1.35639 * 110.13140 * 0.02562 * 11 10 9 14 14 C 1.35460 * 107.13201 * 359.72077 * 13 11 10 15 15 Cl 1.73606 * 127.24178 * 180.25802 * 14 13 11 16 16 C 1.46925 * 118.73491 * 306.38735 * 6 5 4 17 17 C 1.53037 * 109.45987 * 119.96818 * 2 1 3 18 18 H 1.08999 * 109.52646 * 61.41934 * 17 2 1 19 19 C 1.52991 * 109.49913 * 301.33604 * 17 2 1 20 20 N 1.46504 * 109.47218 * 175.16224 * 19 17 2 21 21 C 1.36937 * 119.99893 * 179.97438 * 20 19 17 22 22 H 1.08007 * 120.00072 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00213 * 179.97438 * 21 20 19 24 24 N 1.31623 * 119.99719 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 120.00248 * 179.72696 * 23 21 20 26 26 H 1.48509 * 109.47307 * 60.00425 * 25 23 21 27 27 H 1.48502 * 109.47048 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47491 * 300.00486 * 25 23 21 29 29 H 1.08997 * 109.47149 * 300.03619 * 1 2 3 30 30 H 1.08999 * 109.47450 * 60.03145 * 1 2 3 31 31 H 1.09002 * 109.47301 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.49758 * 58.66329 * 4 2 1 33 33 H 1.09005 * 109.52400 * 298.58275 * 4 2 1 34 34 H 1.08994 * 109.58762 * 294.84610 * 5 4 2 35 35 H 1.09000 * 109.70457 * 174.48996 * 5 4 2 36 36 H 1.09001 * 109.46655 * 90.03122 * 12 11 10 37 37 H 1.08996 * 109.47204 * 210.03035 * 12 11 10 38 38 H 1.08998 * 109.46967 * 330.03297 * 12 11 10 39 39 H 1.08003 * 126.43807 * 179.97438 * 13 11 10 40 40 H 1.08994 * 109.58963 * 293.82337 * 16 6 5 41 41 H 1.09008 * 109.58338 * 173.39628 * 16 6 5 42 42 H 1.08998 * 109.47436 * 55.16010 * 19 17 2 43 43 H 1.09001 * 109.47249 * 295.16051 * 19 17 2 44 44 H 0.96989 * 119.99803 * 0.02562 * 20 19 17 45 45 H 0.96996 * 119.99827 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2502 5 6 3.5713 -0.6885 -1.2643 6 7 4.0678 -1.2489 -0.0001 7 6 4.9614 -2.2579 -0.0002 8 8 5.4428 -2.6435 1.0474 9 6 5.3555 -2.8950 -1.2727 10 7 4.8421 -2.6522 -2.4624 11 7 5.4176 -3.3816 -3.3496 12 6 5.0976 -3.3727 -4.7793 13 6 6.3639 -4.1618 -2.7704 14 6 6.3599 -3.8771 -1.4460 15 17 7.3713 -4.5733 -0.2187 16 6 3.5713 -0.6886 1.2641 17 6 2.0398 -0.7208 1.2500 18 1 1.6978 -1.7557 1.2388 19 6 1.5028 -0.0190 2.4989 20 7 1.8950 -0.7752 3.6908 21 6 1.5250 -0.3349 4.9335 22 1 0.9436 0.5696 5.0350 23 6 1.8962 -1.0517 6.0628 24 7 2.6042 -2.1543 5.9392 25 14 1.3979 -0.4470 7.7585 26 1 -0.0832 -0.3823 7.8455 27 1 1.9143 -1.3830 8.7893 28 1 1.9668 0.9052 7.9888 29 1 -0.3633 0.5144 0.8896 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3634 -1.0277 0.0005 32 1 1.6572 -0.2206 -2.1398 33 1 1.6977 -1.7556 -1.2390 34 1 3.9142 0.3409 -1.3674 35 1 3.9437 -1.2829 -2.0987 36 1 5.7184 -2.6337 -5.2859 37 1 5.2901 -4.3593 -5.2008 38 1 4.0464 -3.1185 -4.9147 39 1 7.0036 -4.8732 -3.2715 40 1 3.9143 0.3408 1.3673 41 1 3.9417 -1.2847 2.0983 42 1 0.4155 0.0365 2.4454 43 1 1.9156 0.9882 2.5556 44 1 2.4174 -1.5873 3.5997 45 1 2.8633 -2.6554 6.7282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132851574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:08 Heat of formation + Delta-G solvation = 39.616466 kcal Electronic energy + Delta-G solvation = -27968.810683 eV Core-core repulsion = 24048.902050 eV Total energy + Delta-G solvation = -3919.908633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.82170 -41.14314 -39.11680 -37.52355 -36.61931 -35.17473 -34.30245 -33.50907 -31.96407 -31.32175 -29.53263 -28.43284 -27.08874 -25.15179 -24.74137 -23.23452 -22.64871 -22.47162 -21.25301 -20.31076 -19.15257 -18.43293 -17.83809 -17.42940 -16.97794 -16.73651 -16.16024 -15.69445 -15.57491 -15.47034 -15.38474 -15.11506 -14.66237 -14.49737 -14.37298 -14.14032 -14.05962 -13.73462 -13.47496 -13.28393 -13.03712 -12.83078 -12.77278 -12.71214 -12.63542 -12.35561 -12.20689 -11.94912 -11.89810 -11.81984 -11.62257 -11.28260 -11.18327 -10.93782 -10.68354 -10.38334 -9.91178 -9.59677 -8.98855 -7.92791 -5.23483 0.31670 0.82859 0.95272 1.44761 1.49670 1.55846 1.61154 2.03308 2.19495 2.56313 3.22000 3.39535 3.59827 3.69426 3.80743 3.85994 3.89816 4.09270 4.20211 4.29811 4.32434 4.43747 4.47657 4.48532 4.57147 4.61217 4.72088 4.77137 4.77944 4.81090 4.94460 4.96433 5.05474 5.11467 5.13653 5.23943 5.29003 5.44970 5.48842 5.53629 5.58310 5.79642 6.27189 6.33893 6.67986 7.09348 7.32452 8.09300 8.31860 9.30566 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.003242 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.718887 B = 8635.075945 C =10575.503859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 H 0.083 0.917 4 C -0.113 4.113 5 C 0.071 3.929 6 N -0.595 5.595 7 C 0.580 3.420 8 O -0.563 6.563 9 C -0.023 4.023 10 N -0.244 5.244 11 N -0.268 5.268 12 C 0.072 3.928 13 C 0.030 3.970 14 C -0.137 4.137 15 Cl -0.029 7.029 16 C 0.129 3.871 17 C -0.086 4.086 18 H 0.048 0.952 19 C 0.158 3.842 20 N -0.748 5.748 21 C -0.246 4.246 22 H 0.080 0.920 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.978 3.022 26 H -0.274 1.274 27 H -0.297 1.297 28 H -0.276 1.276 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.145 0.855 36 H 0.110 0.890 37 H 0.132 0.868 38 H 0.108 0.892 39 H 0.238 0.762 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.036 0.964 43 H 0.024 0.976 44 H 0.370 0.630 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.763 -0.898 -33.045 33.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 H 0.101 0.899 4 C -0.151 4.151 5 C -0.051 4.051 6 N -0.327 5.327 7 C 0.367 3.633 8 O -0.440 6.440 9 C -0.181 4.181 10 N -0.082 5.082 11 N -0.056 5.056 12 C -0.065 4.065 13 C -0.115 4.115 14 C -0.174 4.174 15 Cl 0.000 7.000 16 C 0.006 3.994 17 C -0.106 4.106 18 H 0.067 0.933 19 C 0.032 3.968 20 N -0.391 5.391 21 C -0.378 4.378 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.806 3.194 26 H -0.200 1.200 27 H -0.224 1.224 28 H -0.202 1.202 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.161 0.839 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.127 0.873 39 H 0.254 0.746 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.201 0.799 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.185 -0.382 -32.988 33.254 hybrid contribution 0.794 -0.808 2.324 2.585 sum 4.979 -1.190 -30.664 31.088 Atomic orbital electron populations 1.21843 0.94058 1.01662 1.02484 1.21114 0.96593 0.99533 0.92625 0.89888 1.21873 0.94107 1.00767 0.98314 1.22940 0.95356 1.00667 0.86161 1.48050 1.41929 1.34026 1.08714 1.17508 0.79317 0.79687 0.86812 1.90858 1.55474 1.64484 1.33155 1.21580 1.01307 1.03004 0.92240 1.73115 1.21026 1.17104 0.96931 1.46212 1.23913 1.25481 1.09957 1.22854 1.05597 1.07781 0.70240 1.23212 0.97180 1.00465 0.90654 1.21128 1.00863 1.03267 0.92174 1.98367 1.65842 1.82564 1.53232 1.21443 0.94247 0.98320 0.85357 1.21550 0.93597 0.99515 0.95959 0.93307 1.20907 0.97198 0.93833 0.84864 1.42681 1.65089 1.29297 1.02025 1.19640 1.26906 1.06274 0.84974 0.90249 1.25679 1.01590 0.97965 1.02002 1.69876 1.44227 1.18986 1.29203 0.85147 0.78003 0.77124 0.79089 1.19981 1.22359 1.20218 0.93062 0.90101 0.93630 0.87260 0.92865 0.90696 0.83887 0.87124 0.84962 0.87325 0.74568 0.91127 0.92859 0.94668 0.95858 0.79890 0.94156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.81 71.98 0.63 -2.63 16 2 C -0.08 -1.99 2.23 -10.77 -0.02 -2.02 16 3 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.11 -2.31 5.36 30.67 0.16 -2.15 16 5 C 0.07 1.64 6.33 86.36 0.55 2.18 16 6 N -0.60 -19.96 2.97 -822.52 -2.44 -22.40 16 7 C 0.58 21.99 7.69 86.73 0.67 22.66 16 8 O -0.56 -26.71 15.33 -3.94 -0.06 -26.77 16 9 C -0.02 -0.67 6.88 42.45 0.29 -0.38 16 10 N -0.24 -5.04 8.35 -48.17 -0.40 -5.44 16 11 N -0.27 -3.26 3.72 -368.86 -1.37 -4.63 16 12 C 0.07 -0.02 11.32 127.77 1.45 1.43 16 13 C 0.03 0.41 11.49 83.46 0.96 1.37 16 14 C -0.14 -3.46 6.80 22.44 0.15 -3.31 16 15 Cl -0.03 -0.83 28.20 -2.72 -0.08 -0.91 16 16 C 0.13 5.02 5.50 86.36 0.48 5.49 16 17 C -0.09 -3.10 1.92 -10.72 -0.02 -3.12 16 18 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 19 C 0.16 6.75 5.41 86.38 0.47 7.22 16 20 N -0.75 -41.59 5.38 -343.45 -1.85 -43.43 16 21 C -0.25 -14.68 9.99 84.03 0.84 -13.84 16 22 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 23 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 24 N -0.97 -64.74 13.06 21.65 0.28 -64.46 16 25 Si 0.98 48.94 29.55 68.60 2.03 50.97 16 26 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 27 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 28 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 29 H 0.05 1.30 6.30 -2.39 -0.02 1.29 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.14 3.01 3.73 -81.22 -0.30 2.70 16 36 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 37 H 0.13 -0.82 8.13 -2.39 -0.02 -0.84 16 38 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.24 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.05 2.63 6.24 -2.38 -0.01 2.61 16 42 H 0.04 1.46 6.15 -2.39 -0.01 1.45 16 43 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.37 22.60 6.89 -92.72 -0.64 21.96 16 45 H 0.25 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -87.77 374.30 3.26 -84.51 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.08 Total: 24.16 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 7.07 Total: 8.41 kcal Atomic # 7 Polarization: -134.59 SS G_CDS: -5.78 Total: -140.38 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.06 Total: -26.77 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.03 Total: 50.97 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -87.77 3.26 -84.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132851574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.126 kcal (2) G-P(sol) polarization free energy of solvation -87.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds