Wall clock time and date at job start Sat Apr 11 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46246 * 2 1 4 4 C 1.53038 * 109.44761 * 240.02879 * 2 1 3 5 5 C 1.53630 * 109.23939 * 178.50205 * 4 2 1 6 6 N 1.46926 * 108.54546 * 54.85711 * 5 4 2 7 7 C 1.34774 * 120.62813 * 126.36893 * 6 5 4 8 8 O 1.21626 * 119.99707 * 185.21689 * 7 6 5 9 9 C 1.47298 * 120.00073 * 5.21093 * 7 6 5 10 10 C 1.41338 * 126.43566 * 40.10587 * 9 7 6 11 11 N 1.30413 * 108.04982 * 180.02562 * 10 9 7 12 12 N 1.39931 * 108.95854 * 359.97438 * 11 10 9 13 13 C 1.46496 * 125.74862 * 179.97438 * 12 11 10 14 14 C 1.34350 * 108.49825 * 0.23444 * 12 11 10 15 15 Cl 1.73605 * 126.31704 * 179.77616 * 14 12 11 16 16 C 1.46921 * 118.73523 * 306.09584 * 6 5 4 17 17 C 1.53046 * 109.45815 * 119.96988 * 2 1 3 18 18 H 1.09005 * 109.49609 * 61.41740 * 17 2 1 19 19 C 1.52998 * 109.52219 * 301.34071 * 17 2 1 20 20 N 1.46504 * 109.46860 * 175.14740 * 19 17 2 21 21 C 1.36934 * 120.00054 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99960 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00088 * 179.97438 * 21 20 19 24 24 N 1.31615 * 120.00041 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00148 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46977 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47426 * 119.99601 * 25 23 21 28 28 H 1.48507 * 109.46942 * 239.99811 * 25 23 21 29 29 H 1.09003 * 109.46959 * 300.03438 * 1 2 3 30 30 H 1.09001 * 109.46664 * 60.02374 * 1 2 3 31 31 H 1.08995 * 109.47372 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.49877 * 298.57321 * 4 2 1 33 33 H 1.08998 * 109.49412 * 58.64273 * 4 2 1 34 34 H 1.09006 * 109.73602 * 295.11724 * 5 4 2 35 35 H 1.08996 * 109.66012 * 174.55509 * 5 4 2 36 36 H 1.07997 * 125.97459 * 359.97438 * 10 9 7 37 37 H 1.09003 * 109.46843 * 90.03328 * 13 12 11 38 38 H 1.09000 * 109.47578 * 330.03445 * 13 12 11 39 39 H 1.09003 * 109.47317 * 210.02706 * 13 12 11 40 40 H 1.09003 * 109.58684 * 173.64694 * 16 6 5 41 41 H 1.09004 * 109.58821 * 294.06970 * 16 6 5 42 42 H 1.08997 * 109.47067 * 295.14381 * 19 17 2 43 43 H 1.08992 * 109.47584 * 55.14776 * 19 17 2 44 44 H 0.97002 * 120.00334 * 359.97438 * 20 19 17 45 45 H 0.97006 * 120.00159 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0396 -0.7209 -1.2501 5 6 3.5754 -0.6854 -1.2643 6 7 4.0676 -1.2495 -0.0001 7 6 4.9616 -2.2580 -0.0003 8 8 5.2897 -2.7799 1.0482 9 6 5.5412 -2.7284 -1.2702 10 6 5.9485 -1.9215 -2.3568 11 7 6.4070 -2.7055 -3.2926 12 7 6.3179 -4.0327 -2.8580 13 6 6.7309 -5.2128 -3.6214 14 6 5.7844 -4.0425 -1.6250 15 17 5.4630 -5.4459 -0.6549 16 6 3.5713 -0.6891 1.2641 17 6 2.0399 -0.7209 1.2501 18 1 1.6975 -1.7557 1.2384 19 6 1.5030 -0.0196 2.4994 20 7 1.8952 -0.7765 3.6909 21 6 1.5245 -0.3374 4.9338 22 1 0.9433 0.5672 5.0358 23 6 1.8957 -1.0548 6.0626 24 7 2.6035 -2.1574 5.9383 25 14 1.3905 -0.4554 7.7583 26 1 0.6063 0.7987 7.6266 27 1 0.5598 -1.4917 8.4225 28 1 2.6044 -0.1964 8.5736 29 1 -0.3633 0.5144 0.8897 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3634 -1.0276 0.0005 32 1 1.6973 -1.7557 -1.2382 33 1 1.6565 -0.2211 -2.1398 34 1 3.9188 0.3444 -1.3633 35 1 3.9482 -1.2788 -2.0991 36 1 5.8895 -0.8442 -2.4041 37 1 7.7758 -5.4370 -3.4067 38 1 6.6131 -5.0159 -4.6869 39 1 6.1112 -6.0638 -3.3384 40 1 3.9415 -1.2851 2.0983 41 1 3.9145 0.3404 1.3672 42 1 1.9160 0.9875 2.5565 43 1 0.4158 0.0361 2.4460 44 1 2.4169 -1.5891 3.5993 45 1 2.8626 -2.6590 6.7272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132916655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:18 Heat of formation + Delta-G solvation = 51.782248 kcal Electronic energy + Delta-G solvation = -27909.013307 eV Core-core repulsion = 23989.632221 eV Total energy + Delta-G solvation = -3919.381085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.78466 -39.79971 -37.70519 -37.15497 -34.94432 -33.93097 -33.46715 -31.81442 -30.56753 -29.72657 -28.32260 -27.39712 -25.44282 -23.87587 -23.15536 -22.05842 -21.55077 -21.13823 -19.94622 -19.21171 -17.69141 -16.97094 -16.61227 -16.18939 -15.79116 -15.16012 -14.82536 -14.77833 -14.32264 -14.10477 -13.96342 -13.77427 -13.39945 -13.34359 -13.16674 -12.98352 -12.86357 -12.59382 -12.43175 -12.28552 -11.95751 -11.81179 -11.66538 -11.41260 -11.12910 -10.93689 -10.84229 -10.74271 -10.53048 -10.21353 -10.08624 -9.88596 -9.79893 -9.62892 -9.50959 -8.92957 -8.78676 -8.36621 -6.81007 -5.65273 -2.94650 1.03686 1.09403 1.89620 2.18570 3.00963 3.32079 3.49760 3.54611 3.57439 3.99670 4.52520 4.64958 4.66614 4.69276 4.79471 4.89523 4.92905 4.96783 4.97394 5.10256 5.25718 5.34311 5.46642 5.66711 5.72589 5.73909 5.78459 5.86862 5.93807 5.99135 6.03616 6.09595 6.13003 6.25911 6.31283 6.39536 6.52166 6.65515 6.75762 6.88753 6.97608 7.03168 7.60452 7.79121 8.41087 8.52414 9.63460 10.22449 10.56534 11.56981 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.003140 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.818669 B = 8915.196840 C =10352.853047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.127 4.127 5 C 0.102 3.898 6 N -0.604 5.604 7 C 0.587 3.413 8 O -0.518 6.518 9 C -0.258 4.258 10 C 0.088 3.912 11 N -0.276 5.276 12 N -0.357 5.357 13 C 0.092 3.908 14 C 0.172 3.828 15 Cl 0.027 6.973 16 C 0.122 3.878 17 C -0.101 4.101 18 H 0.074 0.926 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.928 5.928 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.200 0.800 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.018 0.982 43 H 0.026 0.974 44 H 0.385 0.615 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.344 -2.240 -25.494 26.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.166 4.166 5 C -0.021 4.021 6 N -0.338 5.338 7 C 0.373 3.627 8 O -0.393 6.393 9 C -0.274 4.274 10 C -0.099 4.099 11 N -0.097 5.097 12 N -0.139 5.139 13 C -0.049 4.049 14 C 0.015 3.985 15 Cl 0.055 6.945 16 C 0.001 3.999 17 C -0.121 4.121 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.378 5.378 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.577 5.577 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.217 0.783 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.036 0.964 43 H 0.044 0.956 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.985 -2.748 -25.949 26.772 hybrid contribution -0.457 -0.140 1.718 1.783 sum 5.529 -2.888 -24.232 25.022 Atomic orbital electron populations 1.21881 0.95065 1.01915 1.01634 1.21092 0.95884 0.99344 0.93999 0.91059 1.22047 0.94631 1.01549 0.98341 1.22008 0.94829 0.98896 0.86388 1.47947 1.42762 1.35301 1.07743 1.17120 0.78985 0.79582 0.86997 1.90886 1.60563 1.55625 1.32215 1.19969 1.17213 0.90628 0.99552 1.24061 0.95937 1.00407 0.89461 1.77312 1.24465 0.85330 1.22584 1.48481 1.47309 1.07144 1.10987 1.22087 1.01918 0.83373 0.97527 1.22035 0.98825 0.91006 0.86672 1.98472 1.93086 1.36460 1.66486 1.21739 0.93673 0.98984 0.85513 1.21711 0.94582 1.00757 0.95056 0.90774 1.20717 0.96764 0.94030 0.85396 1.42436 1.65260 1.29289 1.00794 1.19234 1.27703 1.06327 0.83803 0.91250 1.24750 1.00923 0.97569 0.97744 1.69689 1.42376 1.17297 1.28311 0.86159 0.77601 0.77676 0.84994 1.20638 1.21980 1.21931 0.91648 0.93301 0.92829 0.91555 0.91008 0.91284 0.89784 0.78339 0.89703 0.88199 0.88932 0.87679 0.91559 0.96417 0.95606 0.78061 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.81 37.16 0.33 -1.42 16 2 C -0.08 -1.03 2.23 -90.57 -0.20 -1.24 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.13 -1.31 5.38 -26.38 -0.14 -1.45 16 5 C 0.10 1.03 5.50 -3.48 -0.02 1.01 16 6 N -0.60 -8.65 2.97 -173.82 -0.52 -9.17 16 7 C 0.59 9.53 7.47 -12.58 -0.09 9.44 16 8 O -0.52 -10.74 16.07 5.25 0.08 -10.66 16 9 C -0.26 -3.39 5.21 -105.02 -0.55 -3.94 16 10 C 0.09 0.91 9.62 -16.98 -0.16 0.74 16 11 N -0.28 -2.95 12.49 30.87 0.39 -2.56 16 12 N -0.36 -3.59 3.98 -64.32 -0.26 -3.84 16 13 C 0.09 0.51 11.28 59.84 0.68 1.18 16 14 C 0.17 2.11 7.52 -16.44 -0.12 1.99 16 15 Cl 0.03 0.33 28.16 -51.86 -1.46 -1.13 16 16 C 0.12 2.07 5.52 -3.72 -0.02 2.05 16 17 C -0.10 -1.66 1.92 -90.50 -0.17 -1.84 16 18 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 19 C 0.16 3.19 5.41 -4.04 -0.02 3.17 16 20 N -0.73 -19.02 5.38 -59.91 -0.32 -19.34 16 21 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -29.17 13.06 55.49 0.72 -28.45 16 25 Si 0.90 23.00 29.55 -169.99 -5.02 17.98 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 29 H 0.06 0.85 6.30 -51.93 -0.33 0.52 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.75 4.75 -51.93 -0.25 0.51 16 36 H 0.20 1.43 7.33 -52.49 -0.38 1.04 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.39 7.77 -51.93 -0.40 -0.01 16 40 H 0.10 2.24 6.20 -51.93 -0.32 1.91 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.03 0.52 6.15 -51.93 -0.32 0.20 16 44 H 0.39 10.75 6.89 -40.82 -0.28 10.47 16 45 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -35.68 375.43 -7.96 -43.64 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.48 Total: 5.69 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.75 Total: 2.20 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: 0.02 Total: -63.37 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.46 Total: -1.13 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.68 -7.96 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132916655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.418 kcal (2) G-P(sol) polarization free energy of solvation -35.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds