Wall clock time and date at job start Sat Apr 11 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46246 * 2 1 4 4 C 1.53038 * 109.44761 * 240.02879 * 2 1 3 5 5 C 1.53630 * 109.23939 * 178.50205 * 4 2 1 6 6 N 1.46926 * 108.54546 * 54.85711 * 5 4 2 7 7 C 1.34774 * 120.62813 * 126.36893 * 6 5 4 8 8 O 1.21626 * 119.99707 * 185.21689 * 7 6 5 9 9 C 1.47298 * 120.00073 * 5.21093 * 7 6 5 10 10 C 1.41338 * 126.43566 * 40.10587 * 9 7 6 11 11 N 1.30413 * 108.04982 * 180.02562 * 10 9 7 12 12 N 1.39931 * 108.95854 * 359.97438 * 11 10 9 13 13 C 1.46496 * 125.74862 * 179.97438 * 12 11 10 14 14 C 1.34350 * 108.49825 * 0.23444 * 12 11 10 15 15 Cl 1.73605 * 126.31704 * 179.77616 * 14 12 11 16 16 C 1.46921 * 118.73523 * 306.09584 * 6 5 4 17 17 C 1.53046 * 109.45815 * 119.96988 * 2 1 3 18 18 H 1.09005 * 109.49609 * 61.41740 * 17 2 1 19 19 C 1.52998 * 109.52219 * 301.34071 * 17 2 1 20 20 N 1.46504 * 109.46860 * 175.14740 * 19 17 2 21 21 C 1.36934 * 120.00054 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99960 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00088 * 179.97438 * 21 20 19 24 24 N 1.31615 * 120.00041 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00148 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46977 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47426 * 119.99601 * 25 23 21 28 28 H 1.48507 * 109.46942 * 239.99811 * 25 23 21 29 29 H 1.09003 * 109.46959 * 300.03438 * 1 2 3 30 30 H 1.09001 * 109.46664 * 60.02374 * 1 2 3 31 31 H 1.08995 * 109.47372 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.49877 * 298.57321 * 4 2 1 33 33 H 1.08998 * 109.49412 * 58.64273 * 4 2 1 34 34 H 1.09006 * 109.73602 * 295.11724 * 5 4 2 35 35 H 1.08996 * 109.66012 * 174.55509 * 5 4 2 36 36 H 1.07997 * 125.97459 * 359.97438 * 10 9 7 37 37 H 1.09003 * 109.46843 * 90.03328 * 13 12 11 38 38 H 1.09000 * 109.47578 * 330.03445 * 13 12 11 39 39 H 1.09003 * 109.47317 * 210.02706 * 13 12 11 40 40 H 1.09003 * 109.58684 * 173.64694 * 16 6 5 41 41 H 1.09004 * 109.58821 * 294.06970 * 16 6 5 42 42 H 1.08997 * 109.47067 * 295.14381 * 19 17 2 43 43 H 1.08992 * 109.47584 * 55.14776 * 19 17 2 44 44 H 0.97002 * 120.00334 * 359.97438 * 20 19 17 45 45 H 0.97006 * 120.00159 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0396 -0.7209 -1.2501 5 6 3.5754 -0.6854 -1.2643 6 7 4.0676 -1.2495 -0.0001 7 6 4.9616 -2.2580 -0.0003 8 8 5.2897 -2.7799 1.0482 9 6 5.5412 -2.7284 -1.2702 10 6 5.9485 -1.9215 -2.3568 11 7 6.4070 -2.7055 -3.2926 12 7 6.3179 -4.0327 -2.8580 13 6 6.7309 -5.2128 -3.6214 14 6 5.7844 -4.0425 -1.6250 15 17 5.4630 -5.4459 -0.6549 16 6 3.5713 -0.6891 1.2641 17 6 2.0399 -0.7209 1.2501 18 1 1.6975 -1.7557 1.2384 19 6 1.5030 -0.0196 2.4994 20 7 1.8952 -0.7765 3.6909 21 6 1.5245 -0.3374 4.9338 22 1 0.9433 0.5672 5.0358 23 6 1.8957 -1.0548 6.0626 24 7 2.6035 -2.1574 5.9383 25 14 1.3905 -0.4554 7.7583 26 1 0.6063 0.7987 7.6266 27 1 0.5598 -1.4917 8.4225 28 1 2.6044 -0.1964 8.5736 29 1 -0.3633 0.5144 0.8897 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3634 -1.0276 0.0005 32 1 1.6973 -1.7557 -1.2382 33 1 1.6565 -0.2211 -2.1398 34 1 3.9188 0.3444 -1.3633 35 1 3.9482 -1.2788 -2.0991 36 1 5.8895 -0.8442 -2.4041 37 1 7.7758 -5.4370 -3.4067 38 1 6.6131 -5.0159 -4.6869 39 1 6.1112 -6.0638 -3.3384 40 1 3.9415 -1.2851 2.0983 41 1 3.9145 0.3404 1.3672 42 1 1.9160 0.9875 2.5565 43 1 0.4158 0.0361 2.4460 44 1 2.4169 -1.5891 3.5993 45 1 2.8626 -2.6590 6.7272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132916655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:17 Heat of formation + Delta-G solvation = 27.041270 kcal Electronic energy + Delta-G solvation = -27910.086156 eV Core-core repulsion = 23989.632221 eV Total energy + Delta-G solvation = -3920.453934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.65894 -40.95911 -38.98700 -38.10011 -36.58072 -35.16759 -34.41764 -33.47660 -31.71933 -31.17745 -29.29613 -28.32575 -27.00720 -25.08081 -24.75846 -23.03458 -22.58855 -22.30214 -21.16179 -20.28756 -19.12939 -18.56341 -17.62868 -17.10753 -16.87937 -16.71840 -16.20019 -15.73977 -15.53744 -15.45584 -15.18954 -15.09649 -14.78240 -14.27884 -14.20912 -14.05152 -14.03099 -13.76974 -13.59370 -13.24304 -13.02169 -13.00202 -12.86992 -12.77162 -12.61642 -12.54611 -12.11307 -12.04252 -11.95039 -11.87375 -11.71892 -11.28246 -11.13740 -10.96161 -10.85445 -10.53669 -9.89966 -9.52784 -8.96346 -7.91694 -5.21685 0.11732 0.19484 1.01290 1.44793 1.46124 1.48212 1.58211 1.88600 2.19473 2.57172 3.24758 3.41216 3.66004 3.75429 3.82092 3.87340 3.94288 4.09082 4.16995 4.28258 4.32586 4.34758 4.37897 4.48585 4.58566 4.60793 4.64591 4.81389 4.83856 4.90059 4.99151 5.02526 5.11591 5.12397 5.17513 5.28765 5.34094 5.40101 5.49000 5.51546 5.61144 5.63268 6.21447 6.28886 6.46462 7.20637 7.34265 8.12070 8.33734 9.31933 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.003140 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.818669 B = 8915.196840 C =10352.853047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 H 0.089 0.911 4 C -0.121 4.121 5 C 0.097 3.903 6 N -0.599 5.599 7 C 0.582 3.418 8 O -0.579 6.579 9 C -0.280 4.280 10 C 0.101 3.899 11 N -0.279 5.279 12 N -0.348 5.348 13 C 0.079 3.921 14 C 0.164 3.836 15 Cl 0.017 6.983 16 C 0.130 3.870 17 C -0.088 4.088 18 H 0.045 0.955 19 C 0.157 3.843 20 N -0.749 5.749 21 C -0.241 4.241 22 H 0.080 0.920 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.975 3.025 26 H -0.261 1.261 27 H -0.294 1.294 28 H -0.295 1.295 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.232 0.768 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.026 0.974 43 H 0.032 0.968 44 H 0.370 0.630 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 -0.184 -28.644 29.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.108 0.892 4 C -0.159 4.159 5 C -0.025 4.025 6 N -0.331 5.331 7 C 0.370 3.630 8 O -0.459 6.459 9 C -0.297 4.297 10 C -0.085 4.085 11 N -0.100 5.100 12 N -0.130 5.130 13 C -0.060 4.060 14 C 0.005 3.995 15 Cl 0.045 6.955 16 C 0.007 3.993 17 C -0.108 4.108 18 H 0.064 0.936 19 C 0.031 3.969 20 N -0.391 5.391 21 C -0.373 4.373 22 H 0.097 0.903 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.804 3.196 26 H -0.186 1.186 27 H -0.222 1.222 28 H -0.222 1.222 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.248 0.752 37 H 0.117 0.883 38 H 0.139 0.861 39 H 0.122 0.878 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.202 0.798 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.443 -0.641 -29.194 29.704 hybrid contribution -0.300 -0.786 2.586 2.719 sum 5.142 -1.427 -26.608 27.138 Atomic orbital electron populations 1.21858 0.94521 1.01472 1.02414 1.21089 0.96265 0.99822 0.92446 0.89224 1.22040 0.94519 1.00837 0.98552 1.22398 0.94830 1.00724 0.84505 1.48000 1.41968 1.34727 1.08365 1.17622 0.78751 0.79219 0.87379 1.90852 1.62755 1.57704 1.34590 1.19796 1.19021 0.91706 0.99129 1.24470 0.94637 1.01618 0.87814 1.77310 1.24481 0.85549 1.22667 1.48838 1.45858 1.08055 1.10235 1.22514 1.02956 0.82278 0.98248 1.22101 0.99199 0.90643 0.87556 1.98466 1.93181 1.36839 1.66989 1.21410 0.93924 0.98454 0.85505 1.21558 0.94102 0.99324 0.95801 0.93630 1.20920 0.97081 0.93957 0.84946 1.42709 1.65061 1.29290 1.02044 1.19697 1.26492 1.06118 0.84976 0.90255 1.25647 1.01737 0.98039 1.01887 1.69884 1.44441 1.18997 1.28951 0.85044 0.77043 0.77680 0.79822 1.18558 1.22164 1.22232 0.93154 0.90183 0.93927 0.93097 0.87068 0.88030 0.88025 0.75185 0.88289 0.86099 0.87806 0.93043 0.90429 0.95584 0.95012 0.79847 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.81 71.98 0.63 -2.46 16 2 C -0.08 -1.71 2.23 -10.76 -0.02 -1.73 16 3 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 4 C -0.12 -2.07 5.38 30.82 0.17 -1.91 16 5 C 0.10 1.64 5.50 86.51 0.48 2.12 16 6 N -0.60 -17.01 2.97 -822.08 -2.44 -19.45 16 7 C 0.58 19.48 7.47 86.63 0.65 20.12 16 8 O -0.58 -25.87 16.07 -4.11 -0.07 -25.94 16 9 C -0.28 -7.20 5.21 -20.12 -0.10 -7.31 16 10 C 0.10 1.82 9.62 85.67 0.82 2.64 16 11 N -0.28 -5.21 12.49 -56.26 -0.70 -5.92 16 12 N -0.35 -6.37 3.98 -357.41 -1.42 -7.79 16 13 C 0.08 0.70 11.28 127.77 1.44 2.14 16 14 C 0.16 3.96 7.52 84.32 0.63 4.60 16 15 Cl 0.02 0.43 28.16 -2.72 -0.08 0.36 16 16 C 0.13 4.54 5.52 86.36 0.48 5.02 16 17 C -0.09 -2.93 1.92 -10.72 -0.02 -2.95 16 18 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 19 C 0.16 6.39 5.41 86.38 0.47 6.86 16 20 N -0.75 -40.38 5.38 -343.46 -1.85 -42.22 16 21 C -0.24 -14.05 9.99 84.03 0.84 -13.21 16 22 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 23 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 24 N -0.97 -63.71 13.06 21.65 0.28 -63.43 16 25 Si 0.98 48.22 29.55 68.60 2.03 50.25 16 26 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 28 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 29 H 0.05 1.22 6.30 -2.39 -0.02 1.20 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 1.16 8.14 -2.38 -0.02 1.15 16 35 H 0.10 1.44 4.75 -2.39 -0.01 1.43 16 36 H 0.23 2.37 7.33 -2.91 -0.02 2.34 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.10 0.71 7.77 -2.39 -0.02 0.69 16 40 H 0.05 2.38 6.20 -2.39 -0.01 2.36 16 41 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.03 1.28 6.15 -2.39 -0.01 1.26 16 44 H 0.37 22.04 6.89 -92.71 -0.64 21.40 16 45 H 0.25 15.80 8.31 -92.70 -0.77 15.03 16 Total: -1.00 -82.98 375.43 3.06 -79.92 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.38 Total: 24.74 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 6.92 Total: 9.47 kcal Atomic # 7 Polarization: -132.68 SS G_CDS: -6.13 Total: -138.80 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.07 Total: -25.94 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -0.08 Total: 0.36 kcal Total: -82.98 3.06 -79.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132916655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.960 kcal (2) G-P(sol) polarization free energy of solvation -82.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds