Wall clock time and date at job start Sat Apr 11 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.44557 * 2 1 4 4 C 1.53036 * 109.45803 * 119.96551 * 2 1 3 5 5 C 1.53195 * 109.30919 * 181.38803 * 4 2 1 6 6 N 1.46930 * 108.89388 * 305.29001 * 5 4 2 7 7 C 1.34769 * 120.63305 * 233.67757 * 6 5 4 8 8 O 1.21571 * 119.99946 * 173.00459 * 7 6 5 9 9 C 1.47711 * 120.00205 * 353.00013 * 7 6 5 10 10 C 1.41504 * 126.51473 * 172.87973 * 9 7 6 11 11 C 1.35515 * 105.48538 * 180.02562 * 10 9 7 12 12 Cl 1.73599 * 126.40247 * 179.97438 * 11 10 9 13 13 N 1.35068 * 107.19842 * 0.02562 * 11 10 9 14 14 C 1.46492 * 124.88706 * 179.97438 * 13 11 10 15 15 N 1.28467 * 110.22865 * 359.72102 * 13 11 10 16 16 C 1.47208 * 118.55079 * 53.54661 * 6 5 4 17 17 C 1.53036 * 109.46152 * 240.03706 * 2 1 3 18 18 H 1.09004 * 109.49849 * 298.56520 * 17 2 1 19 19 C 1.52998 * 109.49873 * 58.66040 * 17 2 1 20 20 N 1.46507 * 109.47237 * 185.00144 * 19 17 2 21 21 C 1.36933 * 120.00078 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00160 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99830 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99861 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00360 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46939 * 89.99840 * 25 23 21 27 27 H 1.48496 * 109.47290 * 210.00044 * 25 23 21 28 28 H 1.48497 * 109.46728 * 330.00568 * 25 23 21 29 29 H 1.08995 * 109.47371 * 300.03429 * 1 2 3 30 30 H 1.09003 * 109.47176 * 60.03198 * 1 2 3 31 31 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.49908 * 61.43650 * 4 2 1 33 33 H 1.08998 * 109.50255 * 301.33550 * 4 2 1 34 34 H 1.08998 * 109.58672 * 65.15389 * 5 4 2 35 35 H 1.09009 * 109.58426 * 185.43381 * 5 4 2 36 36 H 1.08003 * 127.25421 * 359.97438 * 10 9 7 37 37 H 1.09000 * 109.46949 * 89.99540 * 14 13 11 38 38 H 1.08996 * 109.47739 * 210.00141 * 14 13 11 39 39 H 1.09000 * 109.46822 * 330.00307 * 14 13 11 40 40 H 1.08997 * 109.53168 * 186.67425 * 16 6 5 41 41 H 1.08993 * 109.67869 * 66.36326 * 16 6 5 42 42 H 1.09000 * 109.47369 * 304.99645 * 19 17 2 43 43 H 1.09000 * 109.47441 * 65.00509 * 19 17 2 44 44 H 0.97003 * 119.99674 * 359.97438 * 20 19 17 45 45 H 0.97002 * 119.99939 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6885 1.2642 6 7 4.0708 -1.2499 0.0016 7 6 4.9644 -2.2587 0.0045 8 8 5.2740 -2.7995 -1.0393 9 6 5.5679 -2.7071 1.2760 10 6 6.4051 -3.8330 1.4597 11 6 6.7105 -3.8452 2.7799 12 17 7.7127 -5.0050 3.5948 13 7 6.0886 -2.7870 3.3435 14 6 6.1571 -2.4335 4.7635 15 7 5.4325 -2.1320 2.4542 16 6 3.5714 -0.6884 -1.2643 17 6 2.0399 -0.7207 -1.2501 18 1 1.6979 -1.7556 -1.2384 19 6 1.5028 -0.0188 -2.4990 20 7 1.8917 -0.7770 -3.6907 21 6 1.5211 -0.3371 -4.9333 22 1 0.9416 0.5687 -5.0349 23 6 1.8892 -1.0558 -6.0623 24 7 1.5333 -0.6327 -7.2568 25 14 2.8908 -2.6228 -5.8867 26 1 1.9744 -3.7834 -5.7509 27 1 3.7430 -2.8030 -7.0894 28 1 3.7510 -2.5276 -4.6800 29 1 -0.3634 0.5143 0.8896 30 1 -0.3634 0.5133 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6978 -1.7556 1.2383 33 1 1.6572 -0.2207 2.1398 34 1 3.9142 0.3410 1.3674 35 1 3.9416 -1.2824 2.1000 36 1 6.7311 -4.5352 0.7066 37 1 6.9995 -1.7623 4.9306 38 1 5.2329 -1.9374 5.0596 39 1 6.2902 -3.3380 5.3570 40 1 3.9417 -1.2844 -2.0984 41 1 3.9143 0.3408 -1.3698 42 1 0.4157 0.0391 -2.4441 43 1 1.9178 0.9874 -2.5571 44 1 2.4125 -1.5903 -3.5995 45 1 1.7909 -1.1347 -8.0458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132966966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:32 Heat of formation + Delta-G solvation = 64.469689 kcal Electronic energy + Delta-G solvation = -27836.990509 eV Core-core repulsion = 23918.159592 eV Total energy + Delta-G solvation = -3918.830916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.18129 -40.04921 -37.95078 -37.39404 -35.12783 -34.05479 -33.67959 -31.88877 -31.03301 -30.14492 -28.68519 -27.70395 -25.80625 -24.04716 -22.94533 -22.45853 -21.79788 -21.05378 -20.19583 -19.36089 -17.87572 -17.43304 -17.04866 -16.82801 -15.91125 -15.17591 -14.86138 -14.73134 -14.55598 -14.31047 -14.01830 -13.95461 -13.62135 -13.45486 -13.28115 -13.21911 -13.00963 -12.76264 -12.53638 -12.49653 -12.23470 -11.88968 -11.73784 -11.62477 -11.26502 -11.10628 -10.82031 -10.76347 -10.56168 -10.26863 -10.11890 -10.02763 -9.80227 -9.58692 -9.48160 -9.39739 -8.80749 -8.52938 -7.13284 -5.68332 -3.03479 1.00020 1.09911 1.56787 2.02157 2.98654 3.24682 3.50053 3.56923 3.59721 3.79071 4.34640 4.48409 4.66560 4.70371 4.74958 4.77512 4.87928 4.89129 4.93367 5.13595 5.18931 5.33302 5.50943 5.57720 5.61522 5.65036 5.70030 5.79449 5.84183 5.86977 5.91512 5.97263 6.07485 6.13288 6.17784 6.31275 6.40176 6.44404 6.62370 6.77826 6.84075 7.26152 7.46910 8.07548 8.15431 8.50754 9.30271 10.03268 10.22745 11.49936 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.003018 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.555793 B = 9275.563878 C =10965.523430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.073 0.927 4 C -0.127 4.127 5 C 0.088 3.912 6 N -0.597 5.597 7 C 0.598 3.402 8 O -0.523 6.523 9 C 0.006 3.994 10 C -0.150 4.150 11 C 0.050 3.950 12 Cl 0.003 6.997 13 N -0.279 5.279 14 C 0.079 3.921 15 N -0.239 5.239 16 C 0.118 3.882 17 C -0.106 4.106 18 H 0.074 0.926 19 C 0.163 3.837 20 N -0.757 5.757 21 C -0.243 4.243 22 H 0.090 0.910 23 C 0.005 3.995 24 N -0.936 5.936 25 Si 0.879 3.121 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.271 1.271 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.174 0.826 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.027 0.973 44 H 0.362 0.638 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.272 -3.607 31.928 33.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.165 4.165 5 C -0.035 4.035 6 N -0.329 5.329 7 C 0.383 3.617 8 O -0.396 6.396 9 C -0.153 4.153 10 C -0.179 4.179 11 C -0.100 4.100 12 Cl 0.031 6.969 13 N -0.069 5.069 14 C -0.060 4.060 15 N -0.076 5.076 16 C -0.003 4.003 17 C -0.125 4.125 18 H 0.093 0.907 19 C 0.035 3.965 20 N -0.403 5.403 21 C -0.372 4.372 22 H 0.107 0.893 23 C -0.190 4.190 24 N -0.584 5.584 25 Si 0.709 3.291 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.197 1.197 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.192 0.808 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.195 0.805 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.949 -2.935 31.917 33.277 hybrid contribution 1.193 -1.851 -0.140 2.207 sum 10.142 -4.786 31.777 33.697 Atomic orbital electron populations 1.21890 0.94883 1.01952 1.01838 1.21094 0.96009 0.99437 0.93798 0.90898 1.21985 0.94953 1.01317 0.98275 1.22397 0.94203 1.00094 0.86849 1.48041 1.41963 1.34467 1.08423 1.16888 0.79259 0.79700 0.85877 1.90861 1.62063 1.55208 1.31516 1.21918 1.03643 0.97400 0.92386 1.21500 1.01901 1.00841 0.93643 1.21918 1.02900 0.92772 0.92437 1.98409 1.65515 1.54213 1.78794 1.45693 1.33801 1.17939 1.09430 1.22304 1.05764 1.03643 0.74331 1.73620 1.15478 1.20396 0.98121 1.21854 0.93941 0.99277 0.85220 1.21767 0.94300 1.00897 0.95551 0.90738 1.20710 0.97405 0.94073 0.84271 1.42787 1.66094 1.28835 1.02579 1.19033 1.28414 1.07896 0.81907 0.89263 1.24649 1.00591 0.98700 0.95106 1.69708 1.51034 1.40632 0.97019 0.86621 0.80644 0.84574 0.77302 1.21141 1.21733 1.19653 0.93165 0.91500 0.92818 0.91755 0.90897 0.91589 0.86422 0.80812 0.89079 0.87733 0.88455 0.88332 0.90918 0.94615 0.95509 0.80493 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.82 37.16 0.33 -1.39 16 2 C -0.08 -1.02 2.23 -90.58 -0.20 -1.22 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.32 5.36 -26.61 -0.14 -1.46 16 5 C 0.09 0.97 6.10 -3.71 -0.02 0.95 16 6 N -0.60 -8.70 2.98 -173.70 -0.52 -9.22 16 7 C 0.60 9.64 7.69 -12.39 -0.10 9.55 16 8 O -0.52 -10.42 16.38 5.30 0.09 -10.33 16 9 C 0.01 0.07 6.82 -82.77 -0.56 -0.49 16 10 C -0.15 -1.73 10.80 -39.31 -0.42 -2.16 16 11 C 0.05 0.46 7.44 -17.10 -0.13 0.33 16 12 Cl 0.00 0.02 28.67 -51.86 -1.49 -1.47 16 13 N -0.28 -2.31 3.70 -64.88 -0.24 -2.55 16 14 C 0.08 0.27 11.14 59.84 0.67 0.94 16 15 N -0.24 -2.55 8.47 33.42 0.28 -2.26 16 16 C 0.12 1.96 5.54 -3.55 -0.02 1.94 16 17 C -0.11 -1.67 1.92 -90.50 -0.17 -1.85 16 18 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 19 C 0.16 3.16 5.41 -4.04 -0.02 3.14 16 20 N -0.76 -18.64 5.18 -59.91 -0.31 -18.95 16 21 C -0.24 -7.08 10.47 -15.06 -0.16 -7.23 16 22 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 24 N -0.94 -30.28 13.97 55.49 0.78 -29.51 16 25 Si 0.88 23.49 27.74 -169.99 -4.71 18.77 16 26 H -0.28 -7.55 7.11 56.52 0.40 -7.15 16 27 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 28 H -0.27 -7.06 6.52 56.52 0.37 -6.69 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.85 6.29 -51.93 -0.33 0.52 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.12 1.23 4.19 -68.11 -0.29 0.95 16 36 H 0.17 1.90 8.06 -52.48 -0.42 1.48 16 37 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 38 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.10 0.18 7.71 -51.93 -0.40 -0.22 16 40 H 0.10 1.97 6.23 -51.93 -0.32 1.65 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.04 0.70 6.14 -51.93 -0.32 0.38 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.36 8.98 4.76 -40.82 -0.19 8.79 16 45 H 0.26 7.98 8.31 -40.82 -0.34 7.65 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -35.78 372.36 -8.08 -43.86 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.51 Total: 4.94 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.05 Total: 1.11 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.01 Total: -62.49 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -4.71 Total: 18.77 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -1.49 Total: -1.47 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.78 -8.08 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132966966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.329 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds