Wall clock time and date at job start Sat Apr 11 2020 06:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.44557 * 2 1 4 4 C 1.53036 * 109.45803 * 119.96551 * 2 1 3 5 5 C 1.53195 * 109.30919 * 181.38803 * 4 2 1 6 6 N 1.46930 * 108.89388 * 305.29001 * 5 4 2 7 7 C 1.34769 * 120.63305 * 233.67757 * 6 5 4 8 8 O 1.21571 * 119.99946 * 173.00459 * 7 6 5 9 9 C 1.47711 * 120.00205 * 353.00013 * 7 6 5 10 10 C 1.41504 * 126.51473 * 172.87973 * 9 7 6 11 11 C 1.35515 * 105.48538 * 180.02562 * 10 9 7 12 12 Cl 1.73599 * 126.40247 * 179.97438 * 11 10 9 13 13 N 1.35068 * 107.19842 * 0.02562 * 11 10 9 14 14 C 1.46492 * 124.88706 * 179.97438 * 13 11 10 15 15 N 1.28467 * 110.22865 * 359.72102 * 13 11 10 16 16 C 1.47208 * 118.55079 * 53.54661 * 6 5 4 17 17 C 1.53036 * 109.46152 * 240.03706 * 2 1 3 18 18 H 1.09004 * 109.49849 * 298.56520 * 17 2 1 19 19 C 1.52998 * 109.49873 * 58.66040 * 17 2 1 20 20 N 1.46507 * 109.47237 * 185.00144 * 19 17 2 21 21 C 1.36933 * 120.00078 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00160 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99830 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99861 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00360 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46939 * 89.99840 * 25 23 21 27 27 H 1.48496 * 109.47290 * 210.00044 * 25 23 21 28 28 H 1.48497 * 109.46728 * 330.00568 * 25 23 21 29 29 H 1.08995 * 109.47371 * 300.03429 * 1 2 3 30 30 H 1.09003 * 109.47176 * 60.03198 * 1 2 3 31 31 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.49908 * 61.43650 * 4 2 1 33 33 H 1.08998 * 109.50255 * 301.33550 * 4 2 1 34 34 H 1.08998 * 109.58672 * 65.15389 * 5 4 2 35 35 H 1.09009 * 109.58426 * 185.43381 * 5 4 2 36 36 H 1.08003 * 127.25421 * 359.97438 * 10 9 7 37 37 H 1.09000 * 109.46949 * 89.99540 * 14 13 11 38 38 H 1.08996 * 109.47739 * 210.00141 * 14 13 11 39 39 H 1.09000 * 109.46822 * 330.00307 * 14 13 11 40 40 H 1.08997 * 109.53168 * 186.67425 * 16 6 5 41 41 H 1.08993 * 109.67869 * 66.36326 * 16 6 5 42 42 H 1.09000 * 109.47369 * 304.99645 * 19 17 2 43 43 H 1.09000 * 109.47441 * 65.00509 * 19 17 2 44 44 H 0.97003 * 119.99674 * 359.97438 * 20 19 17 45 45 H 0.97002 * 119.99939 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6885 1.2642 6 7 4.0708 -1.2499 0.0016 7 6 4.9644 -2.2587 0.0045 8 8 5.2740 -2.7995 -1.0393 9 6 5.5679 -2.7071 1.2760 10 6 6.4051 -3.8330 1.4597 11 6 6.7105 -3.8452 2.7799 12 17 7.7127 -5.0050 3.5948 13 7 6.0886 -2.7870 3.3435 14 6 6.1571 -2.4335 4.7635 15 7 5.4325 -2.1320 2.4542 16 6 3.5714 -0.6884 -1.2643 17 6 2.0399 -0.7207 -1.2501 18 1 1.6979 -1.7556 -1.2384 19 6 1.5028 -0.0188 -2.4990 20 7 1.8917 -0.7770 -3.6907 21 6 1.5211 -0.3371 -4.9333 22 1 0.9416 0.5687 -5.0349 23 6 1.8892 -1.0558 -6.0623 24 7 1.5333 -0.6327 -7.2568 25 14 2.8908 -2.6228 -5.8867 26 1 1.9744 -3.7834 -5.7509 27 1 3.7430 -2.8030 -7.0894 28 1 3.7510 -2.5276 -4.6800 29 1 -0.3634 0.5143 0.8896 30 1 -0.3634 0.5133 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6978 -1.7556 1.2383 33 1 1.6572 -0.2207 2.1398 34 1 3.9142 0.3410 1.3674 35 1 3.9416 -1.2824 2.1000 36 1 6.7311 -4.5352 0.7066 37 1 6.9995 -1.7623 4.9306 38 1 5.2329 -1.9374 5.0596 39 1 6.2902 -3.3380 5.3570 40 1 3.9417 -1.2844 -2.0984 41 1 3.9143 0.3408 -1.3698 42 1 0.4157 0.0391 -2.4441 43 1 1.9178 0.9874 -2.5571 44 1 2.4125 -1.5903 -3.5995 45 1 1.7909 -1.1347 -8.0458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132966966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:31 Heat of formation + Delta-G solvation = 40.321518 kcal Electronic energy + Delta-G solvation = -27838.037652 eV Core-core repulsion = 23918.159592 eV Total energy + Delta-G solvation = -3919.878060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.95631 -41.21671 -39.20045 -38.02833 -36.78121 -35.23677 -34.56748 -33.69325 -32.09774 -31.55537 -29.60369 -28.60394 -27.26767 -25.09298 -24.58429 -23.43850 -22.64384 -22.46675 -21.37980 -20.39342 -19.63530 -18.62283 -17.91448 -17.65411 -17.07513 -16.72168 -16.30075 -15.92122 -15.68811 -15.42075 -15.23068 -15.02555 -14.93096 -14.64837 -14.33774 -14.22595 -14.18026 -13.82795 -13.54376 -13.40271 -13.29658 -13.16722 -12.92413 -12.74278 -12.66141 -12.53421 -12.24764 -12.11947 -11.93895 -11.87135 -11.68508 -11.45805 -11.25344 -11.03151 -10.84945 -10.38306 -10.15786 -9.69783 -9.28807 -8.05579 -5.36879 0.23705 0.32199 0.69590 1.34102 1.37294 1.38535 1.44791 1.94949 2.13740 2.44416 2.99443 3.26638 3.49163 3.60863 3.80606 3.82699 3.97699 4.04874 4.08401 4.26345 4.28633 4.30672 4.32944 4.46479 4.56802 4.58434 4.62487 4.74872 4.78989 4.85586 4.92506 4.93394 5.03393 5.07849 5.12101 5.21082 5.23602 5.35441 5.46326 5.56828 5.60341 5.74745 6.19653 6.25088 6.55093 6.98637 7.05623 7.83411 8.00078 9.16056 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.003018 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.555793 B = 9275.563878 C =10965.523430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.085 0.915 4 C -0.119 4.119 5 C 0.085 3.915 6 N -0.594 5.594 7 C 0.591 3.409 8 O -0.576 6.576 9 C -0.023 4.023 10 C -0.171 4.171 11 C 0.058 3.942 12 Cl 0.027 6.973 13 N -0.263 5.263 14 C 0.064 3.936 15 N -0.229 5.229 16 C 0.122 3.878 17 C -0.093 4.093 18 H 0.058 0.942 19 C 0.160 3.840 20 N -0.762 5.762 21 C -0.227 4.227 22 H 0.065 0.935 23 C -0.057 4.057 24 N -0.980 5.980 25 Si 0.942 3.058 26 H -0.278 1.278 27 H -0.292 1.292 28 H -0.267 1.267 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.168 0.832 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.031 0.969 44 H 0.361 0.639 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.756 -3.567 36.558 38.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.104 0.896 4 C -0.157 4.157 5 C -0.036 4.036 6 N -0.325 5.325 7 C 0.378 3.622 8 O -0.455 6.455 9 C -0.180 4.180 10 C -0.200 4.200 11 C -0.093 4.093 12 Cl 0.055 6.945 13 N -0.054 5.054 14 C -0.073 4.073 15 N -0.068 5.068 16 C -0.001 4.001 17 C -0.112 4.112 18 H 0.077 0.923 19 C 0.034 3.966 20 N -0.408 5.408 21 C -0.358 4.358 22 H 0.083 0.917 23 C -0.248 4.248 24 N -0.631 5.631 25 Si 0.770 3.230 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.192 1.192 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.146 0.854 36 H 0.186 0.814 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.194 0.806 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.414 -2.868 36.640 37.938 hybrid contribution 1.053 -1.792 -1.391 2.501 sum 10.467 -4.660 35.249 37.064 Atomic orbital electron populations 1.21863 0.94172 1.01801 1.02465 1.21092 0.96502 0.99711 0.92448 0.89640 1.21962 0.94147 1.00998 0.98547 1.22672 0.94755 1.00940 0.85266 1.48124 1.41438 1.34016 1.08914 1.17345 0.79032 0.79362 0.86437 1.90814 1.63906 1.57081 1.33659 1.21442 1.05538 0.98904 0.92071 1.21559 1.02593 1.00901 0.94980 1.21862 1.02500 0.93098 0.91889 1.98423 1.64692 1.53276 1.78078 1.46156 1.31802 1.16781 1.10654 1.22840 1.07678 1.05336 0.71466 1.73495 1.15580 1.20189 0.97550 1.21631 0.94313 0.98856 0.85291 1.21631 0.93719 1.00083 0.95810 0.92306 1.20919 0.97770 0.93980 0.83960 1.42887 1.65930 1.29249 1.02704 1.19069 1.26543 1.06491 0.83734 0.91706 1.25329 1.02552 1.02034 0.94919 1.69848 1.53145 1.42330 0.97794 0.85605 0.79222 0.81034 0.77117 1.20452 1.21796 1.19201 0.90312 0.93089 0.93383 0.92623 0.87238 0.89907 0.85397 0.81403 0.87157 0.85844 0.86523 0.92416 0.90154 0.94093 0.95145 0.80612 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.82 71.98 0.63 -2.36 16 2 C -0.08 -1.71 2.23 -10.77 -0.02 -1.73 16 3 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 4 C -0.12 -2.06 5.36 30.67 0.16 -1.89 16 5 C 0.09 1.66 6.10 86.36 0.53 2.19 16 6 N -0.59 -17.11 2.98 -821.73 -2.45 -19.56 16 7 C 0.59 19.54 7.69 86.75 0.67 20.21 16 8 O -0.58 -24.33 16.38 -3.94 -0.06 -24.39 16 9 C -0.02 -0.58 6.82 42.46 0.29 -0.29 16 10 C -0.17 -3.92 10.80 22.44 0.24 -3.68 16 11 C 0.06 0.94 7.44 83.56 0.62 1.57 16 12 Cl 0.03 0.31 28.67 -2.72 -0.08 0.23 16 13 N -0.26 -3.59 3.70 -359.18 -1.33 -4.92 16 14 C 0.06 0.18 11.14 127.77 1.42 1.60 16 15 N -0.23 -4.37 8.47 -48.18 -0.41 -4.78 16 16 C 0.12 4.06 5.54 86.31 0.48 4.54 16 17 C -0.09 -2.90 1.92 -10.72 -0.02 -2.92 16 18 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 19 C 0.16 6.22 5.41 86.38 0.47 6.68 16 20 N -0.76 -38.22 5.18 -343.44 -1.78 -40.00 16 21 C -0.23 -13.59 10.47 84.03 0.88 -12.71 16 22 H 0.06 4.13 8.06 -2.91 -0.02 4.11 16 23 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 24 N -0.98 -65.17 13.97 21.65 0.30 -64.87 16 25 Si 0.94 50.08 27.74 68.60 1.90 51.98 16 26 H -0.28 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.29 -15.43 7.11 99.48 0.71 -14.72 16 28 H -0.27 -13.85 6.52 99.48 0.65 -13.21 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.21 6.29 -2.39 -0.02 1.19 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.13 2.30 4.19 -23.32 -0.10 2.20 16 36 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.12 -0.07 7.71 -2.39 -0.02 -0.09 16 40 H 0.06 2.42 6.23 -2.39 -0.01 2.40 16 41 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.04 1.58 6.14 -2.39 -0.01 1.57 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.36 18.28 4.76 -92.71 -0.44 17.84 16 45 H 0.26 16.37 8.31 -92.71 -0.77 15.59 16 Total: -1.00 -81.39 372.36 3.34 -78.05 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.43 Total: 20.10 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 6.82 Total: 8.15 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -5.67 Total: -134.12 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.06 Total: -24.39 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 1.90 Total: 51.98 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -0.08 Total: 0.23 kcal Total: -81.39 3.34 -78.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132966966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.368 kcal (2) G-P(sol) polarization free energy of solvation -81.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds