Wall clock time and date at job start Sat Apr 11 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.44526 * 2 1 4 4 C 1.53101 * 109.50912 * 240.01798 * 2 1 3 5 5 C 1.53191 * 109.33444 * 178.62736 * 4 2 1 6 6 N 1.46931 * 108.77184 * 54.63396 * 5 4 2 7 7 C 1.34779 * 120.62924 * 126.37135 * 6 5 4 8 8 O 1.21694 * 120.00056 * 180.93558 * 7 6 5 9 9 C 1.46664 * 119.99773 * 0.93266 * 7 6 5 10 10 C 1.36673 * 126.84387 * 25.77921 * 9 7 6 11 11 N 1.33302 * 107.83116 * 179.89038 * 10 9 7 12 12 C 1.31020 * 109.70539 * 0.38350 * 11 10 9 13 13 Cl 1.73600 * 125.43552 * 179.78287 * 12 11 10 14 14 N 1.34606 * 109.12813 * 359.75946 * 12 11 10 15 15 C 1.46496 * 126.48863 * 179.97438 * 14 12 11 16 16 C 1.46926 * 118.74078 * 306.39112 * 6 5 4 17 17 C 1.53041 * 109.46149 * 119.96112 * 2 1 3 18 18 H 1.08999 * 109.49762 * 61.43643 * 17 2 1 19 19 C 1.53005 * 109.49826 * 301.37273 * 17 2 1 20 20 N 1.46500 * 109.46875 * 175.05969 * 19 17 2 21 21 C 1.36940 * 119.99628 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00155 * 0.02562 * 21 20 19 23 23 C 1.38807 * 119.99819 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00254 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00071 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46867 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47471 * 119.99982 * 25 23 21 28 28 H 1.48506 * 109.47151 * 240.00103 * 25 23 21 29 29 H 1.08996 * 109.47885 * 300.03596 * 1 2 3 30 30 H 1.09003 * 109.47558 * 60.03803 * 1 2 3 31 31 H 1.09008 * 109.47043 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.48655 * 58.67058 * 4 2 1 33 33 H 1.09003 * 109.51361 * 298.60559 * 4 2 1 34 34 H 1.09001 * 109.58719 * 294.84590 * 5 4 2 35 35 H 1.09002 * 109.70216 * 174.48923 * 5 4 2 36 36 H 1.08005 * 126.08614 * 359.97438 * 10 9 7 37 37 H 1.09000 * 109.46917 * 264.51728 * 15 14 12 38 38 H 1.08999 * 109.47639 * 24.52561 * 15 14 12 39 39 H 1.09002 * 109.47210 * 144.52385 * 15 14 12 40 40 H 1.09002 * 109.58295 * 293.82408 * 16 6 5 41 41 H 1.08997 * 109.58354 * 173.39746 * 16 6 5 42 42 H 1.09000 * 109.47053 * 295.06265 * 19 17 2 43 43 H 1.09005 * 109.46971 * 55.06153 * 19 17 2 44 44 H 0.97000 * 120.00472 * 0.02562 * 20 19 17 45 45 H 0.96992 * 120.00452 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 6 2.0412 -0.7212 -1.2500 5 6 3.5727 -0.6889 -1.2634 6 7 4.0685 -1.2489 0.0013 7 6 4.9622 -2.2578 0.0021 8 8 5.3523 -2.7244 1.0561 9 6 5.4644 -2.7935 -1.2676 10 6 5.5417 -2.1337 -2.4620 11 7 6.0562 -2.9740 -3.3599 12 6 6.2989 -4.1306 -2.7942 13 17 6.9665 -5.5207 -3.5916 14 7 5.9486 -4.0689 -1.4960 15 6 6.0586 -5.1483 -0.5117 16 6 3.5713 -0.6884 1.2652 17 6 2.0398 -0.7206 1.2501 18 1 1.6978 -1.7555 1.2384 19 6 1.5020 -0.0192 2.4990 20 7 1.8923 -0.7767 3.6907 21 6 1.5213 -0.3369 4.9334 22 1 0.9406 0.5681 5.0349 23 6 1.8915 -1.0543 6.0626 24 7 2.5995 -2.1569 5.9390 25 14 1.3848 -0.4549 7.7577 26 1 0.6006 0.7992 7.6252 27 1 0.5536 -1.4912 8.4213 28 1 2.5979 -0.1957 8.5742 29 1 -0.3635 0.5143 0.8896 30 1 -0.3634 0.5132 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6591 -0.2213 -2.1401 33 1 1.6992 -1.7561 -1.2388 34 1 3.9157 0.3406 -1.3665 35 1 3.9456 -1.2836 -2.0974 36 1 5.2409 -1.1128 -2.6455 37 1 5.1053 -5.6716 -0.4383 38 1 6.8339 -5.8477 -0.8245 39 1 6.3185 -4.7288 0.4602 40 1 3.9142 0.3412 1.3682 41 1 3.9412 -1.2841 2.0996 42 1 1.9157 0.9876 2.5568 43 1 0.4148 0.0373 2.4443 44 1 2.4141 -1.5893 3.5997 45 1 2.8579 -2.6584 6.7280 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132982435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:41 Heat of formation + Delta-G solvation = 48.310226 kcal Electronic energy + Delta-G solvation = -27981.113824 eV Core-core repulsion = 24061.582181 eV Total energy + Delta-G solvation = -3919.531643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.68237 -40.05036 -37.94463 -37.37748 -35.30460 -34.44442 -33.71138 -32.01481 -30.64172 -29.62040 -28.13588 -27.50607 -25.63282 -24.31455 -23.29158 -22.17856 -21.94693 -21.25257 -19.98389 -19.32451 -17.67189 -17.13161 -16.96040 -16.47403 -16.11045 -15.25108 -14.97136 -14.87159 -14.66632 -14.21244 -14.16376 -13.87533 -13.51590 -13.47433 -13.22282 -13.10185 -12.87209 -12.65093 -12.55555 -12.19971 -11.98449 -11.84849 -11.75395 -11.42768 -11.01496 -10.89459 -10.82243 -10.77586 -10.61738 -10.27926 -10.20814 -10.15486 -10.00703 -9.81544 -9.60389 -8.89477 -8.84973 -8.57319 -6.89033 -5.72955 -3.02410 0.82949 0.95571 2.24894 2.33993 2.97515 3.08867 3.44806 3.50069 3.52601 4.14571 4.36497 4.47099 4.58897 4.70360 4.80032 4.87130 4.88938 4.92350 5.10669 5.23753 5.26457 5.35746 5.54080 5.59882 5.63441 5.66873 5.71002 5.77751 5.90423 5.92515 5.96493 6.01073 6.13017 6.20433 6.29486 6.32016 6.42947 6.51055 6.55891 6.78909 6.87005 7.26834 7.33100 7.72588 8.05412 8.44901 9.56103 10.13906 10.47881 11.49438 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.002854 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.662256 B = 9808.962409 C =11326.458919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.127 4.127 5 C 0.074 3.926 6 N -0.591 5.591 7 C 0.588 3.412 8 O -0.528 6.528 9 C -0.053 4.053 10 C 0.028 3.972 11 N -0.467 5.467 12 C 0.255 3.745 13 Cl 0.040 6.960 14 N -0.411 5.411 15 C 0.056 3.944 16 C 0.122 3.878 17 C -0.101 4.101 18 H 0.074 0.926 19 C 0.158 3.842 20 N -0.733 5.733 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.202 0.798 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.019 0.981 43 H 0.028 0.972 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 -2.160 -22.365 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.165 4.165 5 C -0.048 4.048 6 N -0.324 5.324 7 C 0.374 3.626 8 O -0.404 6.404 9 C -0.171 4.171 10 C -0.125 4.125 11 N -0.189 5.189 12 C -0.031 4.031 13 Cl 0.068 6.932 14 N -0.095 5.095 15 C -0.085 4.085 16 C 0.001 3.999 17 C -0.121 4.121 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.378 5.378 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.578 5.578 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.219 0.781 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.124 0.876 42 H 0.037 0.963 43 H 0.046 0.954 44 H 0.218 0.782 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.247 -2.421 -22.403 23.136 hybrid contribution -0.171 -0.425 1.666 1.728 sum 5.076 -2.845 -20.737 21.538 Atomic orbital electron populations 1.21879 0.94912 1.01962 1.01758 1.21120 0.96039 0.99412 0.93858 0.90924 1.21980 0.94338 1.01651 0.98571 1.22620 0.95465 0.99929 0.86831 1.47829 1.41562 1.34490 1.08471 1.16687 0.79577 0.80143 0.86188 1.90888 1.58077 1.59440 1.32037 1.20912 1.11655 0.86490 0.98004 1.23082 1.01772 1.00492 0.87200 1.70083 1.17740 0.98904 1.32152 1.23203 1.05535 0.92643 0.81742 1.98430 1.82694 1.34972 1.77129 1.45065 1.44362 1.11279 1.08763 1.22483 1.04401 0.88483 0.93118 1.21832 0.93862 0.99275 0.84890 1.21721 0.94180 1.00852 0.95335 0.90776 1.20730 0.96909 0.94057 0.85254 1.42427 1.65330 1.29205 1.00838 1.19241 1.27765 1.06345 0.83754 0.91180 1.24750 1.00852 0.97541 0.97812 1.69679 1.42428 1.17344 1.28376 0.86145 0.77636 0.77722 0.84846 1.20592 1.21931 1.21896 0.91607 0.93159 0.92818 0.90595 0.91528 0.90636 0.87654 0.78149 0.89348 0.88881 0.86757 0.91085 0.87585 0.96296 0.95424 0.78170 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.82 37.16 0.33 -1.33 16 2 C -0.09 -0.98 2.23 -90.55 -0.20 -1.18 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.20 5.36 -26.58 -0.14 -1.35 16 5 C 0.07 0.69 5.40 -3.71 -0.02 0.67 16 6 N -0.59 -7.87 2.97 -174.31 -0.52 -8.39 16 7 C 0.59 8.83 7.57 -12.86 -0.10 8.74 16 8 O -0.53 -9.93 14.70 5.19 0.08 -9.85 16 9 C -0.05 -0.67 6.54 -82.10 -0.54 -1.21 16 10 C 0.03 0.30 9.59 -17.48 -0.17 0.14 16 11 N -0.47 -5.71 11.21 -11.48 -0.13 -5.84 16 12 C 0.26 2.92 8.48 -90.34 -0.77 2.16 16 13 Cl 0.04 0.36 28.63 -51.86 -1.48 -1.13 16 14 N -0.41 -4.86 3.18 -118.36 -0.38 -5.24 16 15 C 0.06 0.55 10.73 59.84 0.64 1.19 16 16 C 0.12 1.94 5.52 -3.71 -0.02 1.92 16 17 C -0.10 -1.57 1.92 -90.50 -0.17 -1.74 16 18 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 19 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 20 N -0.73 -18.42 5.38 -59.90 -0.32 -18.74 16 21 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 25 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H 0.06 0.81 6.30 -51.93 -0.33 0.49 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 0.87 3.40 -51.93 -0.18 0.69 16 36 H 0.20 1.58 5.76 -52.48 -0.30 1.28 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.66 7.62 -51.93 -0.40 0.26 16 39 H 0.11 1.32 6.63 -51.93 -0.34 0.98 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.11 2.12 6.20 -51.93 -0.32 1.80 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.03 0.54 6.14 -51.93 -0.32 0.22 16 44 H 0.38 10.35 6.89 -40.82 -0.28 10.06 16 45 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -33.75 369.57 -9.15 -42.90 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.24 Total: 7.29 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.43 Total: 3.70 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -0.62 Total: -66.02 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.48 Total: -1.13 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.75 -9.15 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132982435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.208 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds