Wall clock time and date at job start Sat Apr 11 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47064 * 2 1 4 4 C 1.53000 * 109.46903 * 240.00423 * 2 1 3 5 5 C 1.53003 * 109.47045 * 175.16076 * 4 2 1 6 6 H 1.09000 * 109.46699 * 305.80876 * 5 4 2 7 7 C 1.52997 * 109.47302 * 185.81712 * 5 4 2 8 8 N 1.46499 * 109.47605 * 65.81302 * 5 4 2 9 9 C 1.36938 * 119.99923 * 206.91235 * 8 5 4 10 10 H 1.08000 * 120.00240 * 6.55911 * 9 8 5 11 11 C 1.38810 * 119.99726 * 186.56287 * 9 8 5 12 12 N 1.31618 * 120.00188 * 186.17503 * 11 9 8 13 13 Si 1.86801 * 119.99944 * 6.44596 * 11 9 8 14 14 H 1.48497 * 109.47416 * 265.32701 * 13 11 9 15 15 H 1.48495 * 109.47094 * 25.33144 * 13 11 9 16 16 H 1.48507 * 109.46731 * 145.32689 * 13 11 9 17 17 N 1.46498 * 109.47422 * 120.00312 * 2 1 3 18 18 C 1.34779 * 120.00049 * 273.11500 * 17 2 1 19 19 O 1.21278 * 119.99952 * 4.95511 * 18 17 2 20 20 C 1.50701 * 120.00002 * 184.96296 * 18 17 2 21 21 N 1.46503 * 109.47211 * 185.25649 * 20 18 17 22 22 C 1.35065 * 125.56572 * 90.02084 * 21 20 18 23 23 O 1.21291 * 127.28508 * 359.94644 * 22 21 20 24 24 C 1.49978 * 105.42828 * 179.97438 * 22 21 20 25 25 O 1.21304 * 127.28209 * 179.97438 * 24 22 21 26 26 N 1.35059 * 105.43550 * 0.02562 * 24 22 21 27 27 C 1.46501 * 125.56859 * 179.97438 * 26 24 22 28 28 C 1.34272 * 125.56583 * 269.72083 * 21 20 18 29 29 O 1.21483 * 124.29866 * 0.02562 * 28 21 20 30 30 H 1.09008 * 109.46763 * 299.99320 * 1 2 3 31 31 H 1.08996 * 109.47515 * 59.99422 * 1 2 3 32 32 H 1.08995 * 109.47064 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47473 * 55.15601 * 4 2 1 34 34 H 1.09000 * 109.47224 * 295.15210 * 4 2 1 35 35 H 1.09002 * 109.47359 * 59.98815 * 7 5 4 36 36 H 1.08991 * 109.47435 * 179.97438 * 7 5 4 37 37 H 1.09005 * 109.47074 * 299.99729 * 7 5 4 38 38 H 0.96999 * 119.99899 * 26.90663 * 8 5 4 39 39 H 0.97000 * 120.00436 * 180.27344 * 12 11 9 40 40 H 0.97002 * 120.00258 * 93.11072 * 17 2 1 41 41 H 1.08996 * 109.46838 * 305.25572 * 20 18 17 42 42 H 1.09004 * 109.46982 * 65.25626 * 20 18 17 43 43 H 1.09000 * 109.46954 * 0.02562 * 27 26 24 44 44 H 1.09006 * 109.47017 * 120.02317 * 27 26 24 45 45 H 1.08998 * 109.47040 * 240.02179 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5651 -0.6167 -1.3117 6 1 3.8603 0.4308 -1.2499 7 6 4.0635 -1.2098 -2.6310 8 7 4.1516 -1.3563 -0.1913 9 6 5.3761 -0.9932 0.3027 10 1 5.8616 -0.0996 -0.0607 11 6 5.9932 -1.7738 1.2705 12 7 7.1101 -1.3635 1.8331 13 14 5.2427 -3.4102 1.7688 14 1 4.3865 -3.2178 2.9668 15 1 4.4192 -3.9379 0.6514 16 1 6.3258 -4.3759 2.0845 17 7 2.0184 -0.6907 1.1961 18 6 2.1833 -0.0096 2.3474 19 8 1.8431 1.1523 2.4187 20 6 2.7904 -0.6919 3.5461 21 7 2.7463 0.2130 4.6975 22 6 1.7357 0.3010 5.5892 23 8 0.7049 -0.3383 5.5970 24 6 2.1573 1.3569 6.5672 25 8 1.5397 1.7522 7.5335 26 7 3.3697 1.7753 6.1440 27 6 4.1867 2.8081 6.7859 28 6 3.7064 1.0862 5.0418 29 8 4.7460 1.2363 4.4315 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6075 -0.2599 -2.1372 34 1 1.7492 -1.7708 -1.2070 35 1 3.6271 -0.6596 -3.4646 36 1 5.1499 -1.1349 -2.6756 37 1 3.7683 -2.2573 -2.6929 38 1 3.6725 -2.1031 0.2006 39 1 7.5435 -1.9108 2.5065 40 1 2.2231 -1.6381 1.1595 41 1 2.2268 -1.5967 3.7733 42 1 3.8261 -0.9537 3.3293 43 1 3.6652 3.1906 7.6633 44 1 5.1419 2.3794 7.0892 45 1 4.3609 3.6227 6.0829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135598057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:41 Heat of formation + Delta-G solvation = -88.688461 kcal Electronic energy + Delta-G solvation = -31746.709109 eV Core-core repulsion = 27380.527592 eV Total energy + Delta-G solvation = -4366.181517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.58796 -41.09268 -40.51158 -39.99839 -38.48968 -37.73877 -36.46575 -35.86721 -34.14501 -32.77646 -31.35385 -30.55501 -28.03004 -27.56857 -26.84731 -25.26526 -23.72605 -23.17395 -22.34242 -21.97096 -21.25850 -19.54027 -19.31363 -19.14325 -18.39895 -18.02990 -17.84159 -17.37481 -16.72982 -16.56423 -16.39134 -16.25665 -15.96750 -15.88593 -15.80443 -15.01159 -14.89277 -14.48383 -14.26718 -14.23075 -14.13209 -14.03649 -13.67597 -13.57190 -13.41147 -13.17182 -12.85865 -12.75290 -12.51348 -12.30287 -12.30164 -12.05703 -11.96487 -11.77565 -11.66173 -11.48204 -11.43728 -11.20487 -10.88839 -10.74182 -10.05045 -9.14963 -7.88560 -5.21485 -0.99291 0.47412 0.81597 1.23619 1.31537 1.33311 1.45012 1.50088 1.54278 2.22425 2.55012 2.59988 3.35719 3.42312 3.50138 3.73850 3.81086 3.86581 3.94151 4.07727 4.13194 4.18549 4.33253 4.40019 4.54318 4.56471 4.64739 4.72965 4.81722 4.86462 4.89877 5.05479 5.10214 5.13854 5.28854 5.36300 5.39060 5.43037 5.57743 5.62914 5.87873 5.91342 6.29931 6.31654 6.45575 7.11812 7.20359 7.92887 8.15217 9.33297 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.004711 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.083986 B = 5942.138500 C = 7158.621292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.057 0.943 4 C -0.121 4.121 5 C 0.166 3.834 6 H 0.029 0.971 7 C -0.157 4.157 8 N -0.736 5.736 9 C -0.217 4.217 10 H 0.038 0.962 11 C -0.057 4.057 12 N -0.980 5.980 13 Si 0.922 3.078 14 H -0.249 1.249 15 H -0.242 1.242 16 H -0.311 1.311 17 N -0.689 5.689 18 C 0.510 3.490 19 O -0.576 6.576 20 C 0.092 3.908 21 N -0.557 5.557 22 C 0.516 3.484 23 O -0.427 6.427 24 C 0.528 3.472 25 O -0.424 6.424 26 N -0.563 5.563 27 C 0.081 3.919 28 C 0.707 3.293 29 O -0.496 6.496 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.024 0.976 37 H 0.056 0.944 38 H 0.362 0.638 39 H 0.252 0.748 40 H 0.405 0.595 41 H 0.158 0.842 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.098 0.902 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.735 0.960 3.252 14.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.076 0.924 4 C -0.159 4.159 5 C 0.058 3.942 6 H 0.048 0.952 7 C -0.216 4.216 8 N -0.381 5.381 9 C -0.348 4.348 10 H 0.056 0.944 11 C -0.249 4.249 12 N -0.631 5.631 13 Si 0.748 3.252 14 H -0.174 1.174 15 H -0.166 1.166 16 H -0.239 1.239 17 N -0.341 5.341 18 C 0.295 3.705 19 O -0.456 6.456 20 C -0.032 4.032 21 N -0.305 5.305 22 C 0.297 3.703 23 O -0.293 6.293 24 C 0.309 3.691 25 O -0.291 6.291 26 N -0.312 5.312 27 C -0.057 4.057 28 C 0.410 3.590 29 O -0.364 6.364 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.197 0.803 39 H 0.061 0.939 40 H 0.241 0.759 41 H 0.176 0.824 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.116 0.884 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.086 1.885 3.473 14.630 hybrid contribution 0.902 -1.171 0.324 1.513 sum -13.184 0.714 3.797 13.738 Atomic orbital electron populations 1.22095 0.93424 1.03097 1.02306 1.21025 0.94553 0.96341 0.83787 0.92431 1.22185 0.94146 1.02261 0.97332 1.20471 0.92349 0.94356 0.86977 0.95246 1.22273 1.00025 1.01269 0.98070 1.42668 1.19436 1.37695 1.38345 1.18789 0.95049 1.05010 1.15972 0.94401 1.25420 0.97637 1.02052 0.99783 1.69927 1.21932 1.39836 1.31359 0.85931 0.78561 0.80706 0.79987 1.17405 1.16581 1.23870 1.45850 1.65525 1.13278 1.09409 1.20564 0.77714 0.86884 0.85350 1.90646 1.52431 1.18013 1.84528 1.21862 1.06425 0.92606 0.82287 1.46138 1.19234 1.37982 1.27103 1.21010 0.83101 0.83752 0.82393 1.90801 1.22383 1.44105 1.72011 1.20430 0.81355 0.82437 0.84879 1.90827 1.56796 1.56849 1.24581 1.46601 1.20024 1.38311 1.26303 1.22355 0.95618 0.88375 0.99393 1.16052 0.83326 0.78844 0.80824 1.91182 1.24293 1.66134 1.54752 0.94421 0.89614 0.90685 0.86894 0.89356 0.91058 0.95658 0.92505 0.80318 0.93898 0.75853 0.82411 0.85750 0.85826 0.88379 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.50 71.98 0.68 -2.43 16 2 C 0.15 3.86 2.57 44.99 0.12 3.98 16 3 H 0.06 1.89 7.59 -2.39 -0.02 1.87 16 4 C -0.12 -2.70 4.43 30.60 0.14 -2.57 16 5 C 0.17 5.41 2.89 44.99 0.13 5.54 16 6 H 0.03 1.12 8.06 -2.39 -0.02 1.11 16 7 C -0.16 -4.63 9.51 71.98 0.68 -3.94 16 8 N -0.74 -29.30 3.53 -322.94 -1.14 -30.44 16 9 C -0.22 -11.45 10.41 84.03 0.87 -10.57 16 10 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 11 C -0.06 -3.14 5.50 84.86 0.47 -2.68 16 12 N -0.98 -60.87 13.97 21.65 0.30 -60.57 16 13 Si 0.92 39.10 27.36 68.60 1.88 40.98 16 14 H -0.25 -9.09 6.96 99.48 0.69 -8.40 16 15 H -0.24 -8.92 6.68 99.48 0.66 -8.26 16 16 H -0.31 -14.38 7.11 99.48 0.71 -13.67 16 17 N -0.69 -20.28 3.76 -442.54 -1.66 -21.94 16 18 C 0.51 17.85 7.87 87.66 0.69 18.54 16 19 O -0.58 -23.61 16.12 -3.02 -0.05 -23.66 16 20 C 0.09 2.96 6.34 85.63 0.54 3.50 16 21 N -0.56 -17.86 2.15 -778.32 -1.68 -19.53 16 22 C 0.52 15.18 8.31 87.39 0.73 15.90 16 23 O -0.43 -13.43 17.88 -3.06 -0.05 -13.48 16 24 C 0.53 13.96 8.31 87.39 0.73 14.69 16 25 O -0.42 -11.72 17.65 -3.10 -0.05 -11.78 16 26 N -0.56 -14.48 3.06 -797.76 -2.44 -16.92 16 27 C 0.08 1.39 10.95 127.77 1.40 2.78 16 28 C 0.71 23.76 8.32 179.37 1.49 25.26 16 29 O -0.50 -21.10 17.38 -3.66 -0.06 -21.17 16 30 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.36 12.97 4.00 -92.71 -0.37 12.60 16 39 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.40 10.53 6.70 -92.71 -0.62 9.91 16 41 H 0.16 3.78 8.10 -2.39 -0.02 3.76 16 42 H 0.12 4.67 7.52 -2.39 -0.02 4.65 16 43 H 0.12 1.50 7.76 -2.39 -0.02 1.48 16 44 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -78.45 386.03 3.69 -74.76 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: -0.01 Total: 35.74 kcal Atomic # 6 Polarization: 59.35 SS G_CDS: 8.67 Total: 68.01 kcal Atomic # 7 Polarization: -142.78 SS G_CDS: -6.62 Total: -149.40 kcal Atomic # 8 Polarization: -69.87 SS G_CDS: -0.22 Total: -70.09 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.88 Total: 40.98 kcal Total: -78.45 3.69 -74.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135598057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.933 kcal (2) G-P(sol) polarization free energy of solvation -78.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds