Wall clock time and date at job start Sat Apr 11 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47035 * 119.99739 * 2 1 3 5 5 C 1.52997 * 109.47049 * 185.00124 * 4 2 1 6 6 H 1.09001 * 109.47289 * 305.00191 * 5 4 2 7 7 C 1.53006 * 109.47127 * 185.00237 * 5 4 2 8 8 N 1.46500 * 109.47473 * 64.99864 * 5 4 2 9 9 C 1.34770 * 120.00256 * 205.00145 * 8 5 4 10 10 O 1.21283 * 120.00026 * 359.97438 * 9 8 5 11 11 C 1.50701 * 119.99922 * 180.02562 * 9 8 5 12 12 N 1.46509 * 109.47017 * 179.97438 * 11 9 8 13 13 C 1.35058 * 125.56489 * 90.02416 * 12 11 9 14 14 O 1.21299 * 127.28608 * 359.93987 * 13 12 11 15 15 C 1.49981 * 105.43035 * 179.97438 * 13 12 11 16 16 O 1.21299 * 127.28442 * 179.97438 * 15 13 12 17 17 N 1.35057 * 105.43027 * 359.97438 * 15 13 12 18 18 C 1.46503 * 125.56558 * 179.97438 * 17 15 13 19 19 C 1.34274 * 125.56475 * 269.71539 * 12 11 9 20 20 O 1.21487 * 124.30095 * 0.02562 * 19 12 11 21 21 N 1.46501 * 109.47050 * 239.99623 * 2 1 3 22 22 C 1.36935 * 119.99647 * 85.00479 * 21 2 1 23 23 H 1.08001 * 120.00212 * 359.97438 * 22 21 2 24 24 C 1.38816 * 119.99839 * 180.02562 * 22 21 2 25 25 N 1.31623 * 119.99958 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00036 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46666 * 89.99847 * 26 24 22 28 28 H 1.48496 * 109.47256 * 209.99621 * 26 24 22 29 29 H 1.48496 * 109.47455 * 330.00276 * 26 24 22 30 30 H 1.09001 * 109.47061 * 300.00404 * 1 2 3 31 31 H 1.09000 * 109.46883 * 59.99999 * 1 2 3 32 32 H 1.08997 * 109.46835 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47250 * 65.00006 * 4 2 1 34 34 H 1.08998 * 109.47252 * 304.99929 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 7 5 4 36 36 H 1.08993 * 109.46955 * 60.00011 * 7 5 4 37 37 H 1.09000 * 109.47050 * 179.97438 * 7 5 4 38 38 H 0.97005 * 119.99374 * 25.00210 * 8 5 4 39 39 H 1.08991 * 109.47241 * 299.99575 * 11 9 8 40 40 H 1.09000 * 109.47273 * 60.00364 * 11 9 8 41 41 H 1.09001 * 109.47222 * 0.02792 * 18 17 15 42 42 H 1.09001 * 109.47138 * 120.03338 * 18 17 15 43 43 H 1.09004 * 109.47576 * 240.02884 * 18 17 15 44 44 H 0.97001 * 119.99978 * 264.99691 * 21 2 1 45 45 H 0.96999 * 120.00193 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 1 3.9954 -0.9922 0.3869 7 6 4.0851 -1.4382 2.4926 8 7 3.9480 0.7895 1.4924 9 6 5.1611 1.2136 1.0867 10 8 5.9359 0.4339 0.5740 11 6 5.5555 2.6564 1.2710 12 7 6.9106 2.8622 0.7536 13 6 7.2231 3.2125 -0.5128 14 8 6.4555 3.4145 -1.4300 15 6 8.7201 3.2982 -0.5453 16 8 9.4193 3.5843 -1.4943 17 7 9.1249 2.9895 0.7057 18 6 10.5157 2.9400 1.1634 19 6 8.0443 2.7390 1.4624 20 8 8.0871 2.4366 2.6383 21 7 2.0183 -0.6907 -1.1961 22 6 2.1492 -0.0076 -2.3757 23 1 1.8920 1.0403 -2.4243 24 6 2.6114 -0.6621 -3.5092 25 7 2.9243 -1.9392 -3.4501 26 14 2.7892 0.2696 -5.1185 27 1 4.1515 0.8545 -5.2038 28 1 2.5784 -0.6619 -6.2556 29 1 1.7793 1.3568 -5.1753 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7516 -1.7714 1.2057 34 1 1.6054 -0.2617 2.1370 35 1 3.6546 -1.0592 3.4195 36 1 3.8001 -2.4818 2.3596 37 1 5.1715 -1.3617 2.5382 38 1 3.3284 1.4129 1.9028 39 1 4.8584 3.2956 0.7294 40 1 5.5299 2.9074 2.3314 41 1 11.1796 3.1922 0.3364 42 1 10.6571 3.6550 1.9739 43 1 10.7453 1.9360 1.5204 44 1 2.2491 -1.6319 -1.1525 45 1 3.2476 -2.3965 -4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135598061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:36 Heat of formation + Delta-G solvation = -75.894013 kcal Electronic energy + Delta-G solvation = -30816.794184 eV Core-core repulsion = 26451.167476 eV Total energy + Delta-G solvation = -4365.626708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.58155 -39.87983 -39.42938 -38.87023 -36.95686 -36.66459 -35.43466 -34.48843 -32.25840 -31.34808 -30.02584 -28.58523 -27.17095 -26.32348 -25.85169 -23.60414 -22.65187 -22.20405 -21.20441 -20.43851 -19.74581 -18.32486 -18.16561 -17.29857 -17.26978 -16.85832 -16.82373 -16.23501 -15.54652 -15.49091 -15.09053 -14.93082 -14.77255 -14.54716 -13.95176 -13.71740 -13.67428 -13.49914 -13.15667 -13.10633 -12.91113 -12.78014 -12.45870 -12.12461 -12.01605 -11.73841 -11.62599 -11.31250 -11.05006 -10.81983 -10.77540 -10.59858 -10.44779 -10.39271 -10.35509 -10.20836 -9.89092 -9.59444 -9.56619 -8.85508 -8.82660 -6.89487 -5.69797 -2.97981 0.09628 1.43625 1.75642 2.26474 2.34346 2.68912 3.28320 3.50653 3.55740 3.57686 3.63516 4.24815 4.60914 4.66698 4.67590 4.83522 4.86875 4.90650 4.98602 5.11221 5.18193 5.33670 5.38328 5.46731 5.64015 5.66874 5.86629 5.91541 6.00365 6.11396 6.27755 6.31116 6.33088 6.38016 6.42131 6.55117 6.65172 6.75556 6.89590 6.94490 7.07084 7.23579 7.60864 7.76074 8.32064 8.48473 9.60221 10.16568 10.50321 11.52814 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.004022 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.853938 B = 6960.747657 C = 8845.597350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.144 3.856 6 H 0.106 0.894 7 C -0.160 4.160 8 N -0.709 5.709 9 C 0.500 3.500 10 O -0.522 6.522 11 C 0.102 3.898 12 N -0.558 5.558 13 C 0.509 3.491 14 O -0.391 6.391 15 C 0.514 3.486 16 O -0.412 6.412 17 N -0.576 5.576 18 C 0.090 3.910 19 C 0.719 3.281 20 O -0.489 6.489 21 N -0.721 5.721 22 C -0.236 4.236 23 H 0.067 0.933 24 C -0.010 4.010 25 N -0.931 5.931 26 Si 0.900 3.100 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.397 0.603 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.382 0.618 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.538 11.111 17.335 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.040 3.960 6 H 0.124 0.876 7 C -0.219 4.219 8 N -0.360 5.360 9 C 0.283 3.717 10 O -0.397 6.397 11 C -0.023 4.023 12 N -0.307 5.307 13 C 0.288 3.712 14 O -0.253 6.253 15 C 0.295 3.705 16 O -0.276 6.276 17 N -0.325 5.325 18 C -0.050 4.050 19 C 0.422 3.578 20 O -0.358 6.358 21 N -0.362 5.362 22 C -0.367 4.367 23 H 0.085 0.915 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.732 3.268 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.230 0.770 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.216 0.784 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.109 10.750 16.406 21.627 hybrid contribution -0.227 0.321 -0.747 0.844 sum 8.882 11.072 15.659 21.135 Atomic orbital electron populations 1.22460 0.99526 1.00816 0.99772 1.20222 0.91606 0.95482 0.86542 0.93682 1.22175 0.93479 1.02375 0.98904 1.21084 0.95286 0.79579 1.00002 0.87580 1.22175 1.01498 1.00248 0.97951 1.45838 1.15837 1.12093 1.62241 1.20460 0.82874 0.89583 0.78803 1.90773 1.50978 1.55848 1.42137 1.21622 0.80313 0.96930 1.03390 1.46083 1.07997 1.64521 1.12102 1.20823 0.90202 0.77548 0.82602 1.90931 1.56130 1.40337 1.37897 1.20861 0.89867 0.76956 0.82836 1.90848 1.61449 1.39713 1.35573 1.46527 1.09429 1.64887 1.11674 1.21969 0.76400 1.04590 1.01999 1.15751 0.80003 0.76997 0.85066 1.91011 1.84842 1.47657 1.12298 1.42399 1.78001 1.10545 1.05296 1.19139 1.36582 0.93650 0.87314 0.91492 1.24680 1.02068 0.95889 0.97957 1.69647 1.50899 1.08613 1.28816 0.86288 0.77977 0.78634 0.83929 1.21613 1.21848 1.20835 0.94721 0.92887 0.93545 0.90522 0.91930 0.93005 0.91646 0.92570 0.76957 0.84970 0.85119 0.88199 0.89677 0.89609 0.78371 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 9.49 37.16 0.35 -2.45 16 2 C 0.17 3.13 2.84 -67.93 -0.19 2.94 16 3 H 0.05 0.83 7.56 -51.93 -0.39 0.44 16 4 C -0.13 -1.88 4.29 -26.73 -0.11 -1.99 16 5 C 0.14 2.21 2.52 -67.93 -0.17 2.04 16 6 H 0.11 2.21 7.06 -51.93 -0.37 1.84 16 7 C -0.16 -2.10 9.48 37.16 0.35 -1.75 16 8 N -0.71 -9.22 4.45 -53.80 -0.24 -9.46 16 9 C 0.50 7.48 7.86 -10.99 -0.09 7.39 16 10 O -0.52 -10.47 16.09 5.55 0.09 -10.38 16 11 C 0.10 1.06 6.34 -5.19 -0.03 1.03 16 12 N -0.56 -6.89 2.15 -122.51 -0.26 -7.16 16 13 C 0.51 7.19 8.31 -11.21 -0.09 7.09 16 14 O -0.39 -6.81 17.89 5.54 0.10 -6.72 16 15 C 0.51 6.45 8.31 -11.21 -0.09 6.35 16 16 O -0.41 -5.89 17.65 5.54 0.10 -5.79 16 17 N -0.58 -5.93 3.06 -128.65 -0.39 -6.32 16 18 C 0.09 0.57 10.95 59.85 0.66 1.22 16 19 C 0.72 8.51 8.32 -87.81 -0.73 7.78 16 20 O -0.49 -6.43 17.38 5.38 0.09 -6.34 16 21 N -0.72 -17.52 4.49 -53.42 -0.24 -17.76 16 22 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 26 Si 0.90 23.45 29.55 -169.99 -5.02 18.43 16 27 H -0.29 -7.71 7.11 56.52 0.40 -7.30 16 28 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 29 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.40 3.66 8.60 -40.82 -0.35 3.31 16 39 H 0.13 1.12 8.10 -51.93 -0.42 0.70 16 40 H 0.13 0.89 7.97 -51.93 -0.41 0.48 16 41 H 0.10 0.52 7.76 -51.93 -0.40 0.12 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.38 10.02 7.80 -40.82 -0.32 9.71 16 45 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 393.64 15.07 5.93 5.93 Total: -1.00 -38.00 393.64 -5.96 -43.96 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.44 Total: 7.07 kcal Atomic # 6 Polarization: 22.95 SS G_CDS: -0.40 Total: 22.55 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -0.41 Total: -68.71 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: 0.38 Total: -29.23 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.00 -5.96 -43.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135598061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.936 kcal (2) G-P(sol) polarization free energy of solvation -37.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds