Wall clock time and date at job start Sat Apr 11 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35787 * 117.00165 * 2 1 4 4 C 1.40341 * 120.91069 * 269.98071 * 3 2 1 5 5 O 1.35565 * 120.48479 * 0.04158 * 4 3 2 6 6 N 1.32399 * 119.02825 * 180.02562 * 4 3 2 7 7 C 1.32494 * 120.97675 * 359.97438 * 6 4 3 8 8 O 1.35542 * 118.99029 * 180.02562 * 7 6 4 9 9 N 1.31854 * 122.01028 * 359.71844 * 7 6 4 10 10 C 1.33530 * 120.87470 * 0.56969 * 9 7 6 11 11 C 1.48060 * 120.54026 * 179.71546 * 10 9 7 12 12 O 1.21528 * 120.00308 * 185.09398 * 11 10 9 13 13 N 1.34777 * 120.00138 * 5.10166 * 11 10 9 14 14 C 1.46499 * 120.00138 * 185.00612 * 13 11 10 15 15 H 1.08999 * 109.47077 * 37.50121 * 14 13 11 16 16 C 1.52996 * 109.47276 * 277.49415 * 14 13 11 17 17 C 1.53002 * 109.47061 * 157.49175 * 14 13 11 18 18 C 1.52997 * 109.47390 * 294.25364 * 17 14 13 19 19 H 1.09000 * 109.47068 * 54.10692 * 18 17 14 20 20 C 1.53001 * 109.47022 * 294.10525 * 18 17 14 21 21 N 1.46506 * 109.47181 * 174.10312 * 18 17 14 22 22 C 1.36937 * 119.99687 * 207.82472 * 21 18 17 23 23 H 1.08000 * 120.00191 * 354.61832 * 22 21 18 24 24 C 1.38812 * 119.99280 * 174.62234 * 22 21 18 25 25 N 1.31622 * 119.99496 * 184.37712 * 24 22 21 26 26 Si 1.86794 * 120.00496 * 4.37494 * 24 22 21 27 27 H 1.48505 * 109.47240 * 94.03452 * 26 24 22 28 28 H 1.48500 * 109.47150 * 214.03367 * 26 24 22 29 29 H 1.48501 * 109.46974 * 334.03370 * 26 24 22 30 30 H 1.08994 * 109.47505 * 299.99841 * 1 2 3 31 31 H 1.09005 * 109.46949 * 59.99928 * 1 2 3 32 32 H 1.09000 * 109.47234 * 179.97438 * 1 2 3 33 33 H 0.96696 * 114.00227 * 89.99580 * 5 4 3 34 34 H 0.96697 * 114.00039 * 90.00631 * 8 7 6 35 35 H 0.97004 * 119.99833 * 5.00348 * 13 11 10 36 36 H 1.08996 * 109.47170 * 300.00192 * 16 14 13 37 37 H 1.09004 * 109.47109 * 60.00052 * 16 14 13 38 38 H 1.08997 * 109.46904 * 179.97438 * 16 14 13 39 39 H 1.08999 * 109.46988 * 174.24915 * 17 14 13 40 40 H 1.09003 * 109.46751 * 54.25542 * 17 14 13 41 41 H 1.09002 * 109.47025 * 60.00030 * 20 18 17 42 42 H 1.09002 * 109.46689 * 180.02562 * 20 18 17 43 43 H 1.08995 * 109.46899 * 299.99878 * 20 18 17 44 44 H 0.96991 * 119.99623 * 27.82784 * 21 18 17 45 45 H 0.97003 * 119.99745 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 2.3732 1.8520 -1.2041 5 8 2.0781 1.2739 -2.3943 6 7 2.9744 3.0308 -1.1606 7 6 3.2666 3.6050 -0.0028 8 8 3.8820 4.8127 -0.0053 9 7 2.9716 3.0402 1.1515 10 6 2.3702 1.8490 1.1977 11 6 2.0480 1.2187 2.4982 12 8 1.5856 0.0953 2.5310 13 7 2.2674 1.8909 3.6456 14 6 2.0527 1.2291 4.9348 15 1 2.3720 0.1891 4.8670 16 6 0.5667 1.2840 5.2950 17 6 2.8663 1.9428 6.0162 18 6 4.3591 1.7650 5.7320 19 1 4.5777 2.0961 4.7168 20 6 4.7340 0.2889 5.8789 21 7 5.1359 2.5632 6.6838 22 6 6.3726 3.0349 6.3328 23 1 6.8125 2.7470 5.3893 24 6 7.0608 3.8828 7.1896 25 7 8.2099 4.4049 6.8161 26 14 6.3561 4.2832 8.8726 27 1 6.9215 3.3507 9.8806 28 1 6.7080 5.6791 9.2373 29 1 4.8786 4.1381 8.8378 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.2057 1.5077 -2.7395 34 1 3.2734 5.5642 -0.0062 35 1 2.5676 2.8129 3.6177 36 1 0.2475 2.3239 5.3628 37 1 -0.0129 0.7755 4.5245 38 1 0.4069 0.7912 6.2540 39 1 2.6286 1.5161 6.9907 40 1 2.6201 3.0046 6.0147 41 1 4.1560 -0.3049 5.1707 42 1 5.7976 0.1623 5.6769 43 1 4.5154 -0.0421 6.8941 44 1 4.7742 2.7574 7.5625 45 1 8.6910 4.9972 7.4150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135919534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:44 Heat of formation + Delta-G solvation = -108.984160 kcal Electronic energy + Delta-G solvation = -30448.460436 eV Core-core repulsion = 26081.398832 eV Total energy + Delta-G solvation = -4367.061604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.89573 -40.91894 -39.97095 -38.86639 -38.36798 -37.83843 -36.28828 -34.82918 -34.02244 -32.29144 -31.47586 -30.70566 -28.10049 -27.63976 -26.80406 -25.50634 -24.92820 -23.18893 -22.12032 -21.27814 -20.80773 -20.23370 -19.66662 -19.40382 -18.86565 -18.36241 -17.66949 -17.23409 -16.70290 -16.47575 -16.21801 -15.94369 -15.80731 -15.34940 -15.28939 -15.18570 -14.64789 -14.44698 -14.30920 -13.95182 -13.91403 -13.48595 -13.42107 -13.33856 -13.00828 -12.93184 -12.83906 -12.72551 -12.34269 -12.29498 -12.06900 -11.98963 -11.82884 -11.77589 -11.63541 -11.49853 -11.46805 -10.94641 -10.43360 -10.31050 -10.11203 -9.29611 -7.99177 -5.32985 -1.02125 -0.68917 1.25976 1.39466 1.44731 1.52154 1.54940 1.85911 2.09117 2.21852 2.40594 2.51629 2.99334 3.30071 3.40796 3.47190 3.62478 3.96279 3.98679 4.13553 4.21743 4.30097 4.42878 4.44006 4.56660 4.57622 4.64472 4.76818 4.81713 4.91791 4.95781 5.04988 5.08248 5.11691 5.33961 5.39062 5.41601 5.58039 5.81079 6.00330 6.24773 6.26032 6.35965 6.43440 6.52482 6.95576 7.12085 7.87737 8.09269 9.22650 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.003191 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.100221 B = 8773.919120 C =10231.479128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.313 6.313 3 C 0.028 3.972 4 C 0.381 3.619 5 O -0.458 6.458 6 N -0.528 5.528 7 C 0.513 3.487 8 O -0.455 6.455 9 N -0.501 5.501 10 C 0.130 3.870 11 C 0.568 3.432 12 O -0.525 6.525 13 N -0.691 5.691 14 C 0.146 3.854 15 H 0.084 0.916 16 C -0.152 4.152 17 C -0.123 4.123 18 C 0.170 3.830 19 H 0.036 0.964 20 C -0.160 4.160 21 N -0.749 5.749 22 C -0.228 4.228 23 H 0.046 0.954 24 C -0.068 4.068 25 N -0.987 5.987 26 Si 0.962 3.038 27 H -0.284 1.284 28 H -0.298 1.298 29 H -0.241 1.241 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.434 0.566 34 H 0.437 0.563 35 H 0.414 0.586 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.023 0.977 43 H 0.060 0.940 44 H 0.368 0.632 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.760 -4.553 -14.349 29.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.226 6.226 3 C -0.024 4.024 4 C 0.189 3.811 5 O -0.270 6.270 6 N -0.267 5.267 7 C 0.208 3.792 8 O -0.262 6.262 9 N -0.232 5.232 10 C -0.016 4.016 11 C 0.351 3.649 12 O -0.400 6.400 13 N -0.342 5.342 14 C 0.042 3.958 15 H 0.102 0.898 16 C -0.211 4.211 17 C -0.162 4.162 18 C 0.062 3.938 19 H 0.054 0.946 20 C -0.219 4.219 21 N -0.393 5.393 22 C -0.359 4.359 23 H 0.064 0.936 24 C -0.259 4.259 25 N -0.638 5.638 26 Si 0.789 3.211 27 H -0.211 1.211 28 H -0.225 1.225 29 H -0.165 1.165 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.134 0.866 33 H 0.299 0.701 34 H 0.302 0.698 35 H 0.251 0.749 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.079 0.921 44 H 0.202 0.798 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -24.392 -5.165 -14.391 28.788 hybrid contribution -0.311 0.841 0.596 1.077 sum -24.702 -4.324 -13.795 28.622 Atomic orbital electron populations 1.23264 0.75758 1.05531 1.01256 1.86125 1.22375 1.20552 1.93580 1.20486 1.00794 0.89660 0.91509 1.19556 0.90048 0.85336 0.86184 1.84797 1.42996 1.67310 1.31853 1.67427 1.14918 1.12377 1.32017 1.19780 0.88357 0.89201 0.81835 1.84826 1.34487 1.12158 1.94742 1.67998 1.13347 1.10889 1.30973 1.22018 0.94790 0.89749 0.95084 1.17544 0.79201 0.85190 0.82946 1.90823 1.44292 1.18253 1.86660 1.46050 1.65992 1.17165 1.05033 1.21163 0.96536 0.97290 0.80778 0.89791 1.22089 0.93439 1.02956 1.02576 1.22127 0.92919 1.01811 0.99338 1.20384 0.90679 0.90179 0.92568 0.94566 1.22352 0.99892 0.98083 1.01593 1.42760 1.17418 1.63669 1.15467 1.18959 0.93642 1.20876 1.02470 0.93629 1.25583 0.97621 0.99504 1.03206 1.69927 1.18245 1.37375 1.38235 0.85304 0.79595 0.76605 0.79616 1.21068 1.22480 1.16472 0.93844 0.90873 0.86643 0.70142 0.69842 0.74933 0.91484 0.92626 0.89718 0.88355 0.90469 0.92021 0.95768 0.92072 0.79817 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.62 113.37 1.20 1.67 16 2 O -0.31 -6.99 8.72 -64.70 -0.56 -7.55 16 3 C 0.03 0.64 5.81 23.11 0.13 0.78 16 4 C 0.38 7.82 7.86 85.12 0.67 8.49 16 5 O -0.46 -6.73 13.42 -76.87 -1.03 -7.76 16 6 N -0.53 -12.17 10.46 -425.94 -4.46 -16.62 16 7 C 0.51 12.40 8.69 180.66 1.57 13.97 16 8 O -0.46 -9.54 13.64 -88.46 -1.21 -10.75 16 9 N -0.50 -13.05 9.74 -302.83 -2.95 -16.00 16 10 C 0.13 3.35 6.79 41.82 0.28 3.63 16 11 C 0.57 15.37 7.73 86.85 0.67 16.04 16 12 O -0.52 -15.65 13.92 16.58 0.23 -15.42 16 13 N -0.69 -17.23 4.48 -445.21 -1.99 -19.22 16 14 C 0.15 3.37 2.40 44.99 0.11 3.48 16 15 H 0.08 2.14 5.94 -2.39 -0.01 2.13 16 16 C -0.15 -2.70 9.43 71.98 0.68 -2.02 16 17 C -0.12 -3.20 4.40 30.59 0.13 -3.06 16 18 C 0.17 6.22 2.93 44.99 0.13 6.35 16 19 H 0.04 1.49 7.54 -2.39 -0.02 1.47 16 20 C -0.16 -5.55 9.29 71.98 0.67 -4.88 16 21 N -0.75 -34.13 4.90 -322.93 -1.58 -35.71 16 22 C -0.23 -13.16 10.41 84.03 0.88 -12.29 16 23 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 24 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 25 N -0.99 -64.37 13.97 21.65 0.30 -64.07 16 26 Si 0.96 45.11 27.90 68.60 1.91 47.02 16 27 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 28 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 29 H -0.24 -9.74 6.29 99.48 0.63 -9.12 16 30 H 0.04 0.65 7.76 -2.39 -0.02 0.63 16 31 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.43 0.85 9.06 -74.06 -0.67 0.18 16 34 H 0.44 3.72 9.06 -74.06 -0.67 3.04 16 35 H 0.41 10.38 7.99 -92.71 -0.74 9.64 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.06 7.83 -2.39 -0.02 1.04 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.06 1.88 6.48 -2.39 -0.02 1.86 16 42 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.37 15.67 5.59 -92.71 -0.52 15.15 16 45 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -83.12 382.27 -5.33 -88.46 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -1.60 Total: 29.03 kcal Atomic # 6 Polarization: 20.99 SS G_CDS: 7.60 Total: 28.58 kcal Atomic # 7 Polarization: -140.94 SS G_CDS: -10.68 Total: -151.61 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -2.57 Total: -41.48 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.91 Total: 47.02 kcal Total: -83.12 -5.33 -88.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135919534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.527 kcal (2) G-P(sol) polarization free energy of solvation -83.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds