Wall clock time and date at job start Sat Apr 11 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.99664 * 2 1 4 4 C 1.54322 * 109.88185 * 121.09738 * 2 1 3 5 5 H 1.08998 * 110.71695 * 215.76409 * 4 2 1 6 6 N 1.46898 * 110.72005 * 338.86293 * 4 2 1 7 7 C 1.46903 * 110.99565 * 204.99999 * 6 4 2 8 8 C 1.50703 * 109.46671 * 180.02562 * 7 6 4 9 9 N 1.33316 * 126.54679 * 269.68695 * 8 7 6 10 10 N 1.28995 * 107.35329 * 179.83649 * 9 8 7 11 11 N 1.28787 * 108.72754 * 0.43101 * 10 9 8 12 12 C 1.46497 * 125.45027 * 179.72497 * 11 10 9 13 13 N 1.28882 * 109.09562 * 359.72641 * 11 10 9 14 14 C 1.55282 * 103.00430 * 97.30744 * 4 2 1 15 15 C 1.54905 * 101.53029 * 35.35966 * 14 4 2 16 16 N 1.47023 * 109.88591 * 238.90779 * 2 1 3 17 17 C 1.34782 * 125.64580 * 59.49709 * 16 2 1 18 18 O 1.21284 * 120.00147 * 0.02562 * 17 16 2 19 19 C 1.50696 * 119.99679 * 180.02562 * 17 16 2 20 20 S 1.81010 * 109.47016 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99928 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99841 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99816 * 179.97438 * 21 20 19 24 24 N 1.31626 * 119.99946 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99900 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47325 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46687 * 120.00489 * 25 23 21 28 28 H 1.48497 * 109.47324 * 240.00381 * 25 23 21 29 29 H 1.09004 * 109.46820 * 179.63677 * 1 2 3 30 30 H 1.08998 * 109.47331 * 299.63922 * 1 2 3 31 31 H 1.09009 * 109.47249 * 59.64118 * 1 2 3 32 32 H 1.00901 * 110.99657 * 81.04983 * 6 4 2 33 33 H 1.09004 * 109.47268 * 299.99693 * 7 6 4 34 34 H 1.08991 * 109.47544 * 60.00368 * 7 6 4 35 35 H 1.09007 * 109.47069 * 270.00128 * 12 11 10 36 36 H 1.08996 * 109.47189 * 30.00016 * 12 11 10 37 37 H 1.08995 * 109.46681 * 150.00083 * 12 11 10 38 38 H 1.09001 * 110.95548 * 277.33125 * 14 4 2 39 39 H 1.08996 * 111.09853 * 153.45188 * 14 4 2 40 40 H 1.09002 * 110.36692 * 204.23391 * 15 14 4 41 41 H 1.08995 * 110.36664 * 82.02192 * 15 14 4 42 42 H 1.09005 * 109.47552 * 300.00224 * 19 17 16 43 43 H 1.08998 * 109.47459 * 60.00768 * 19 17 16 44 44 H 0.97006 * 119.99869 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 2.9639 -0.2813 1.6200 6 7 1.0264 -0.8028 2.2903 7 6 1.6356 -0.9507 3.6188 8 6 0.5523 -1.0022 4.6652 9 7 0.0299 0.0357 5.3189 10 7 -0.8674 -0.4273 6.1216 11 7 -0.9132 -1.7082 5.9962 12 6 -1.8016 -2.6038 6.7411 13 7 -0.0523 -2.0762 5.1104 14 6 2.3546 -2.1705 0.6929 15 6 2.8569 -1.8497 -0.7369 16 7 2.0301 -0.7140 -1.1839 17 6 1.7745 -0.3850 -2.4657 18 8 1.0773 0.5749 -2.7180 19 6 2.3549 -1.2098 -3.5854 20 16 1.8347 -0.5193 -5.1757 21 6 2.6326 -1.6435 -6.2731 22 1 3.2244 -2.4558 -5.8776 23 6 2.4997 -1.4858 -7.6457 24 7 1.7780 -0.4961 -8.1275 25 14 3.3462 -2.6772 -8.8090 26 1 4.0911 -3.6926 -8.0220 27 1 2.3276 -3.3540 -9.6516 28 1 4.2921 -1.9324 -9.6783 29 1 -0.3633 -1.0277 -0.0065 30 1 -0.3634 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8868 32 1 0.3657 -1.5440 2.1109 33 1 2.2162 -1.8727 3.6518 34 1 2.2904 -0.1018 3.8149 35 1 -1.3087 -2.9232 7.6594 36 1 -2.7239 -2.0779 6.9877 37 1 -2.0330 -3.4764 6.1304 38 1 1.4486 -2.7758 0.6622 39 1 3.1313 -2.6621 1.2787 40 1 2.7089 -2.7079 -1.3924 41 1 3.9093 -1.5672 -0.7148 42 1 3.4430 -1.1947 -3.5216 43 1 2.0002 -2.2370 -3.5016 44 1 1.6854 -0.3856 -9.0868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178147744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:56 Heat of formation + Delta-G solvation = 109.401492 kcal Electronic energy + Delta-G solvation = -26408.633507 eV Core-core repulsion = 22526.087437 eV Total energy + Delta-G solvation = -3882.546070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.71703 -40.20015 -37.90894 -36.06103 -35.03607 -33.44199 -32.41818 -31.54576 -30.90862 -29.35129 -28.36850 -26.55909 -25.48013 -25.03926 -23.52699 -22.96038 -22.46166 -20.69787 -18.87033 -18.10676 -17.87250 -17.70597 -16.76573 -16.31714 -15.92880 -15.32973 -15.06974 -14.87027 -14.79304 -14.28221 -14.12941 -13.96222 -13.84533 -13.56528 -13.22314 -13.19571 -12.86302 -12.65290 -12.57060 -12.40054 -12.30281 -12.14338 -11.79037 -11.46046 -11.37327 -11.30307 -11.06728 -11.00436 -10.96495 -10.83371 -10.74216 -10.58078 -9.78979 -9.27177 -9.06299 -8.84765 -8.45188 -8.20373 -6.48173 -6.20510 -3.90731 0.80586 1.50204 1.73107 2.90593 3.12844 3.22051 3.25571 3.31056 3.36927 3.62986 3.78941 3.88048 4.21085 4.27242 4.28348 4.31805 4.42769 4.59796 4.69158 4.85928 4.99250 5.05050 5.11410 5.14500 5.15442 5.31828 5.36417 5.41837 5.47804 5.54678 5.57457 5.67101 5.69696 5.76213 5.92732 5.99426 6.15645 6.16257 6.44872 6.50672 6.65341 6.86476 7.60869 7.74342 7.97307 8.36543 8.63694 9.24807 10.86960 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.031068 B = 0.001812 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.029128 B =15445.450417 C =15655.241840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.147 3.853 3 H 0.078 0.922 4 C 0.084 3.916 5 H 0.099 0.901 6 N -0.668 5.668 7 C 0.158 3.842 8 C 0.173 3.827 9 N -0.265 5.265 10 N -0.064 5.064 11 N -0.142 5.142 12 C 0.095 3.905 13 N -0.306 5.306 14 C -0.163 4.163 15 C 0.104 3.896 16 N -0.624 5.624 17 C 0.550 3.450 18 O -0.512 6.512 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.350 0.650 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 -7.745 31.539 32.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 H 0.096 0.904 4 C -0.027 4.027 5 H 0.117 0.883 6 N -0.300 5.300 7 C 0.026 3.974 8 C -0.110 4.110 9 N -0.137 5.137 10 N -0.057 5.057 11 N -0.054 5.054 12 C -0.046 4.046 13 N -0.158 5.158 14 C -0.203 4.203 15 C -0.020 4.020 16 N -0.363 5.363 17 C 0.338 3.662 18 O -0.385 6.385 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.170 0.830 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.253 -5.316 31.461 32.072 hybrid contribution 1.871 -3.211 -0.737 3.788 sum -1.383 -8.527 30.724 31.915 Atomic orbital electron populations 1.21943 0.94219 1.01676 1.03197 1.21356 0.95544 0.95735 0.83038 0.90444 1.22640 0.94078 0.95010 0.90927 0.88304 1.60376 1.16841 1.53070 0.99723 1.20130 0.89980 1.03060 0.84212 1.25435 1.00748 0.84358 1.00494 1.75885 1.05749 1.26118 1.05918 1.79032 1.15550 0.93110 1.18055 1.50035 1.24624 1.05945 1.24805 1.22445 0.92623 0.93043 0.96440 1.74668 1.06065 1.28068 1.07042 1.23531 1.02453 0.97681 0.96588 1.22170 0.95107 0.89981 0.94761 1.48603 1.52000 1.30678 1.04975 1.19964 0.80109 0.84786 0.81321 1.90699 1.37223 1.28092 1.82512 1.23515 1.03716 1.02472 1.00035 1.85414 1.67105 1.40232 0.90622 1.22904 1.36414 1.15845 0.93115 0.90923 1.24992 0.95269 0.95987 0.97360 1.70030 1.37413 1.29253 1.13541 0.86122 0.79070 0.80207 0.80118 1.19639 1.20587 1.20556 0.93587 0.90634 0.91320 0.83001 0.91833 0.87421 0.88042 0.86869 0.87091 0.90310 0.89798 0.90315 0.91219 0.89392 0.89472 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.26 37.16 0.31 -1.71 16 2 C 0.15 1.81 3.48 -66.95 -0.23 1.58 16 3 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 4 C 0.08 0.68 3.15 -65.81 -0.21 0.48 16 5 H 0.10 0.68 7.82 -51.93 -0.41 0.27 16 6 N -0.67 -5.28 4.78 -105.98 -0.51 -5.79 16 7 C 0.16 1.08 6.17 -4.97 -0.03 1.05 16 8 C 0.17 1.61 7.88 -156.63 -1.23 0.37 16 9 N -0.27 -3.00 12.50 32.45 0.41 -2.60 16 10 N -0.06 -0.64 13.25 60.35 0.80 0.16 16 11 N -0.14 -1.06 4.40 -16.70 -0.07 -1.14 16 12 C 0.09 0.16 11.63 59.85 0.70 0.85 16 13 N -0.31 -2.67 12.13 32.47 0.39 -2.27 16 14 C -0.16 -1.18 6.68 -24.52 -0.16 -1.35 16 15 C 0.10 1.06 6.69 -2.53 -0.02 1.04 16 16 N -0.62 -8.94 3.08 -163.02 -0.50 -9.44 16 17 C 0.55 10.68 7.65 -10.98 -0.08 10.60 16 18 O -0.51 -11.92 14.76 5.55 0.08 -11.84 16 19 C -0.15 -3.04 5.16 36.00 0.19 -2.85 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.53 -15.32 9.50 30.94 0.29 -15.02 16 22 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 25 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 29 H 0.05 0.58 7.95 -51.93 -0.41 0.17 16 30 H 0.07 0.93 7.44 -51.93 -0.39 0.54 16 31 H 0.07 1.15 6.74 -51.92 -0.35 0.79 16 32 H 0.35 2.82 7.72 -39.29 -0.30 2.51 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.11 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 36 H 0.11 0.00 8.14 -51.93 -0.42 -0.42 16 37 H 0.11 0.03 8.14 -51.93 -0.42 -0.40 16 38 H 0.08 0.59 7.77 -51.93 -0.40 0.19 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 43 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -37.87 381.42 -7.14 -45.01 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.40 Total: -1.90 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.58 Total: -2.95 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 1.25 Total: -46.65 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.87 -7.14 -45.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.409 kcal (2) G-P(sol) polarization free energy of solvation -37.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds