Wall clock time and date at job start Sat Apr 11 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.99664 * 2 1 4 4 C 1.54322 * 109.88185 * 121.09738 * 2 1 3 5 5 H 1.08998 * 110.71695 * 215.76409 * 4 2 1 6 6 N 1.46898 * 110.72005 * 338.86293 * 4 2 1 7 7 C 1.46903 * 110.99565 * 204.99999 * 6 4 2 8 8 C 1.50703 * 109.46671 * 180.02562 * 7 6 4 9 9 N 1.33316 * 126.54679 * 269.68695 * 8 7 6 10 10 N 1.28995 * 107.35329 * 179.83649 * 9 8 7 11 11 N 1.28787 * 108.72754 * 0.43101 * 10 9 8 12 12 C 1.46497 * 125.45027 * 179.72497 * 11 10 9 13 13 N 1.28882 * 109.09562 * 359.72641 * 11 10 9 14 14 C 1.55282 * 103.00430 * 97.30744 * 4 2 1 15 15 C 1.54905 * 101.53029 * 35.35966 * 14 4 2 16 16 N 1.47023 * 109.88591 * 238.90779 * 2 1 3 17 17 C 1.34782 * 125.64580 * 59.49709 * 16 2 1 18 18 O 1.21284 * 120.00147 * 0.02562 * 17 16 2 19 19 C 1.50696 * 119.99679 * 180.02562 * 17 16 2 20 20 S 1.81010 * 109.47016 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99928 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99841 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99816 * 179.97438 * 21 20 19 24 24 N 1.31626 * 119.99946 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99900 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47325 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46687 * 120.00489 * 25 23 21 28 28 H 1.48497 * 109.47324 * 240.00381 * 25 23 21 29 29 H 1.09004 * 109.46820 * 179.63677 * 1 2 3 30 30 H 1.08998 * 109.47331 * 299.63922 * 1 2 3 31 31 H 1.09009 * 109.47249 * 59.64118 * 1 2 3 32 32 H 1.00901 * 110.99657 * 81.04983 * 6 4 2 33 33 H 1.09004 * 109.47268 * 299.99693 * 7 6 4 34 34 H 1.08991 * 109.47544 * 60.00368 * 7 6 4 35 35 H 1.09007 * 109.47069 * 270.00128 * 12 11 10 36 36 H 1.08996 * 109.47189 * 30.00016 * 12 11 10 37 37 H 1.08995 * 109.46681 * 150.00083 * 12 11 10 38 38 H 1.09001 * 110.95548 * 277.33125 * 14 4 2 39 39 H 1.08996 * 111.09853 * 153.45188 * 14 4 2 40 40 H 1.09002 * 110.36692 * 204.23391 * 15 14 4 41 41 H 1.08995 * 110.36664 * 82.02192 * 15 14 4 42 42 H 1.09005 * 109.47552 * 300.00224 * 19 17 16 43 43 H 1.08998 * 109.47459 * 60.00768 * 19 17 16 44 44 H 0.97006 * 119.99869 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 2.9639 -0.2813 1.6200 6 7 1.0264 -0.8028 2.2903 7 6 1.6356 -0.9507 3.6188 8 6 0.5523 -1.0022 4.6652 9 7 0.0299 0.0357 5.3189 10 7 -0.8674 -0.4273 6.1216 11 7 -0.9132 -1.7082 5.9962 12 6 -1.8016 -2.6038 6.7411 13 7 -0.0523 -2.0762 5.1104 14 6 2.3546 -2.1705 0.6929 15 6 2.8569 -1.8497 -0.7369 16 7 2.0301 -0.7140 -1.1839 17 6 1.7745 -0.3850 -2.4657 18 8 1.0773 0.5749 -2.7180 19 6 2.3549 -1.2098 -3.5854 20 16 1.8347 -0.5193 -5.1757 21 6 2.6326 -1.6435 -6.2731 22 1 3.2244 -2.4558 -5.8776 23 6 2.4997 -1.4858 -7.6457 24 7 1.7780 -0.4961 -8.1275 25 14 3.3462 -2.6772 -8.8090 26 1 4.0911 -3.6926 -8.0220 27 1 2.3276 -3.3540 -9.6516 28 1 4.2921 -1.9324 -9.6783 29 1 -0.3633 -1.0277 -0.0065 30 1 -0.3634 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8868 32 1 0.3657 -1.5440 2.1109 33 1 2.2162 -1.8727 3.6518 34 1 2.2904 -0.1018 3.8149 35 1 -1.3087 -2.9232 7.6594 36 1 -2.7239 -2.0779 6.9877 37 1 -2.0330 -3.4764 6.1304 38 1 1.4486 -2.7758 0.6622 39 1 3.1313 -2.6621 1.2787 40 1 2.7089 -2.7079 -1.3924 41 1 3.9093 -1.5672 -0.7148 42 1 3.4430 -1.1947 -3.5216 43 1 2.0002 -2.2370 -3.5016 44 1 1.6854 -0.3856 -9.0868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178147744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:56 Heat of formation + Delta-G solvation = 80.499415 kcal Electronic energy + Delta-G solvation = -26409.886795 eV Core-core repulsion = 22526.087437 eV Total energy + Delta-G solvation = -3883.799358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.32651 -41.30893 -39.09677 -36.78837 -35.71432 -34.58931 -34.16320 -32.60499 -31.81824 -30.26625 -29.30761 -27.67715 -27.28287 -25.88017 -24.09123 -23.91651 -23.05630 -21.62158 -20.22708 -19.52743 -18.58307 -18.43804 -18.04234 -17.29883 -16.90153 -16.87880 -16.30051 -16.11147 -15.85390 -15.64506 -15.04518 -14.67564 -14.52223 -14.44112 -14.25758 -14.20338 -13.72973 -13.68953 -13.57401 -13.48857 -13.14939 -13.09277 -12.98529 -12.91441 -12.76673 -12.60349 -12.47759 -11.99853 -11.94659 -11.80305 -11.75008 -11.63836 -11.16022 -11.14267 -10.82184 -10.26896 -9.66466 -9.42362 -8.67777 -8.34787 -6.13367 0.19769 1.04462 1.16220 1.25232 1.41570 1.45567 1.57241 1.61762 2.09575 2.27278 2.80562 2.99369 3.20684 3.26863 3.31564 3.54508 3.62114 3.92874 4.07800 4.12255 4.20818 4.24850 4.25242 4.34649 4.39905 4.44415 4.48555 4.54892 4.60479 4.68698 4.74763 4.78294 4.82901 4.84194 5.02734 5.10475 5.13291 5.22913 5.37709 5.41655 5.52536 5.90031 6.19833 6.25518 6.45820 7.06275 7.18567 7.33993 8.74798 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.031068 B = 0.001812 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.029128 B =15445.450417 C =15655.241840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.139 3.861 3 H 0.062 0.938 4 C 0.101 3.899 5 H 0.122 0.878 6 N -0.678 5.678 7 C 0.162 3.838 8 C 0.165 3.835 9 N -0.303 5.303 10 N -0.086 5.086 11 N -0.129 5.129 12 C 0.078 3.922 13 N -0.311 5.311 14 C -0.147 4.147 15 C 0.090 3.910 16 N -0.614 5.614 17 C 0.545 3.455 18 O -0.564 6.564 19 C -0.119 4.119 20 S -0.153 6.153 21 C -0.545 4.545 22 H 0.083 0.917 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.255 1.255 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.025 0.975 32 H 0.350 0.650 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.206 -10.886 33.671 35.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.035 3.965 3 H 0.080 0.920 4 C -0.009 4.009 5 H 0.139 0.861 6 N -0.310 5.310 7 C 0.031 3.969 8 C -0.118 4.118 9 N -0.174 5.174 10 N -0.080 5.080 11 N -0.044 5.044 12 C -0.060 4.060 13 N -0.164 5.164 14 C -0.187 4.187 15 C -0.032 4.032 16 N -0.349 5.349 17 C 0.333 3.667 18 O -0.442 6.442 19 C -0.270 4.270 20 S 0.074 5.926 21 C -0.692 4.692 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.822 3.178 26 H -0.179 1.179 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.170 0.830 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.097 0.903 39 H 0.139 0.861 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.434 -8.484 33.669 34.751 hybrid contribution 1.232 -2.280 -1.197 2.855 sum -0.202 -10.764 32.472 34.210 Atomic orbital electron populations 1.21799 0.95202 1.01441 1.01426 1.21562 0.94805 0.95814 0.84306 0.91970 1.22487 0.94393 0.95115 0.88953 0.86062 1.60233 1.17078 1.53491 1.00239 1.20237 0.89350 1.04629 0.82681 1.25864 1.01133 0.83998 1.00802 1.75839 1.06861 1.27552 1.07113 1.78955 1.16006 0.94355 1.18640 1.50548 1.24056 1.05803 1.23959 1.23010 0.92760 0.93012 0.97182 1.74649 1.06397 1.27969 1.07422 1.23521 1.03545 0.97029 0.94569 1.22594 0.95573 0.88378 0.96636 1.48528 1.51177 1.31535 1.03702 1.19746 0.79916 0.84156 0.82843 1.90682 1.39679 1.30239 1.83632 1.23304 1.04608 1.02779 0.96272 1.85626 1.68518 1.42517 0.95940 1.23228 1.36458 1.15908 0.93655 0.89865 1.26154 0.95815 0.97915 0.99345 1.70199 1.39079 1.31453 1.14105 0.84885 0.77892 0.77671 0.77361 1.17878 1.19945 1.19899 0.92953 0.89803 0.95571 0.83021 0.89300 0.86750 0.85792 0.85274 0.85391 0.90281 0.86135 0.90102 0.89214 0.87570 0.87734 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 8.26 71.98 0.59 -3.19 16 2 C 0.14 3.30 3.48 45.34 0.16 3.46 16 3 H 0.06 1.68 8.14 -2.38 -0.02 1.67 16 4 C 0.10 1.32 3.15 46.15 0.15 1.47 16 5 H 0.12 1.14 7.82 -2.39 -0.02 1.12 16 6 N -0.68 -9.00 4.78 -489.22 -2.34 -11.33 16 7 C 0.16 1.74 6.17 85.56 0.53 2.27 16 8 C 0.17 2.79 7.88 138.55 1.09 3.88 16 9 N -0.30 -6.67 12.50 -51.26 -0.64 -7.32 16 10 N -0.09 -1.68 13.25 37.02 0.49 -1.19 16 11 N -0.13 -1.73 4.40 -206.74 -0.91 -2.64 16 12 C 0.08 0.09 11.63 127.77 1.49 1.57 16 13 N -0.31 -4.80 12.13 -51.20 -0.62 -5.42 16 14 C -0.15 -1.50 6.68 32.03 0.21 -1.29 16 15 C 0.09 1.54 6.69 86.85 0.58 2.12 16 16 N -0.61 -16.94 3.08 -788.06 -2.43 -19.37 16 17 C 0.55 21.53 7.65 87.66 0.67 22.20 16 18 O -0.56 -27.73 14.76 -3.04 -0.04 -27.77 16 19 C -0.12 -4.89 5.16 71.23 0.37 -4.52 16 20 S -0.15 -8.72 20.57 -56.49 -1.16 -9.89 16 21 C -0.54 -31.45 9.50 67.95 0.65 -30.81 16 22 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 23 C 0.01 0.71 5.49 84.86 0.47 1.17 16 24 N -0.91 -56.67 13.22 21.65 0.29 -56.38 16 25 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 26 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H 0.05 1.30 7.95 -2.38 -0.02 1.29 16 30 H 0.08 2.08 7.44 -2.39 -0.02 2.06 16 31 H 0.03 0.91 6.74 -2.38 -0.02 0.90 16 32 H 0.35 4.74 7.72 -89.69 -0.69 4.05 16 33 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.11 1.08 8.08 -2.39 -0.02 1.06 16 35 H 0.12 -0.38 8.14 -2.38 -0.02 -0.39 16 36 H 0.13 -0.26 8.14 -2.39 -0.02 -0.28 16 37 H 0.13 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.08 0.87 7.77 -2.39 -0.02 0.85 16 39 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.08 1.39 7.48 -2.39 -0.02 1.37 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 43 H 0.10 3.92 7.85 -2.40 -0.02 3.90 16 44 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -87.90 381.42 1.94 -85.96 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.33 Total: 11.17 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 6.95 Total: -1.65 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -6.16 Total: -103.65 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.04 Total: -27.77 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.89 kcal Total: -87.90 1.94 -85.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.457 kcal (2) G-P(sol) polarization free energy of solvation -87.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds